BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645837|ref|NP_208015.1| hypothetical protein
[Helicobacter pylori 26695]
(110 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223862.1| putative [Helicobacter pylori J99] 218 3e-59
ref|NP_223193.1| cag island protein [Helicobacter pylori J99] 25 0.51
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 24 0.87
ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 23 1.5
ref|NP_223584.1| putative [Helicobacter pylori J99] 23 1.9
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 23 2.5
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 3.3
ref|NP_223177.1| putative Glycolate oxidase [Helicobacter p... 22 3.3
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 22 4.3
ref|NP_222802.1| putative [Helicobacter pylori J99] 22 4.3
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 22 5.6
ref|NP_223116.1| FERRIC UPTAKE REGULATION PROTEIN [Helicoba... 22 5.6
ref|NP_223719.1| ALPHA-(1,3)-FUCOSYLTRANSFERASE [Helicobact... 21 7.4
ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 21 7.4
ref|NP_223314.1| ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobact... 21 7.4
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 21 9.6
ref|NP_223674.1| putative [Helicobacter pylori J99] 21 9.6
>ref|NP_223862.1| putative [Helicobacter pylori J99]
Length = 112
Score = 218 bits (555), Expect = 3e-59
Identities = 108/112 (96%), Positives = 109/112 (96%), Gaps = 2/112 (1%)
Query: 1 MLEDYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVL 60
MLEDYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKD+KVL
Sbjct: 1 MLEDYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDQKVL 60
Query: 61 LHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDT--CDKKN 110
LHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDT DKKN
Sbjct: 61 LHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDTSLSDKKN 112
>ref|NP_223193.1| cag island protein [Helicobacter pylori J99]
Length = 199
Score = 25.0 bits (53), Expect = 0.51
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 26/114 (22%)
Query: 2 LEDYAISLEEVNFNDFIVVDVREL-----------DEYEELHLPNATLISVN--DQEK-- 46
+++YAISL++ N + V+EL D Y +L N L S N QEK
Sbjct: 32 IQNYAISLKDSNDPQDFLRRVQELRINMQKNFISFDTYYN-YLNNLVLASYNRCKQEKTF 90
Query: 47 ----------LADFLSQHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNV 90
L +F+++ D C R D S Y P +++GN+
Sbjct: 91 AESTIKNELTLGEFVAEISDNFNNFMCDEVARISDLVASYLPREYLPPFIDGNM 144
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 24.3 bits (51), Expect = 0.87
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 3 EDYAISLEEVNFNDFIVVDVRELDEYEE 30
+D+A +E + + DFI+VD +Y++
Sbjct: 320 KDFAKEIEALEYCDFILVDTTGHSQYDK 347
>ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 321
Score = 23.5 bits (49), Expect = 1.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 58 KVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFE 94
K L+H + K++ E GYT +Y N DF+
Sbjct: 115 KGLIHHKQQETFKTIIKALQEAGYTTHYQILNSADFQ 151
>ref|NP_223584.1| putative [Helicobacter pylori J99]
Length = 219
Score = 23.1 bits (48), Expect = 1.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 82 TPYYLEGNVYDFEKYGFRMVY 102
T YY+ VY+ +K GF V+
Sbjct: 58 TSYYINVIVYELQKLGFYNVF 78
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 22.7 bits (47), Expect = 2.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 5 YAISLEEVNFNDFIVVDVRELDE 27
YA +E +FN+ I VR LDE
Sbjct: 391 YAPVCDEAHFNNAIAYLVRRLDE 413
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 22.3 bits (46), Expect = 3.3
Identities = 14/43 (32%), Positives = 20/43 (45%), Gaps = 4/43 (9%)
Query: 14 FNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKD 56
FN V+ V EL+ YEE+ I D +K + Q+ D
Sbjct: 547 FNGGGVIKVYELESYEEI----LRKIKYEDNDKPLAYEEQYSD 585
>ref|NP_223177.1| putative Glycolate oxidase [Helicobacter pylori J99]
Length = 459
Score = 22.3 bits (46), Expect = 3.3
Identities = 10/44 (22%), Positives = 23/44 (51%), Gaps = 2/44 (4%)
Query: 14 FNDFIVVDVRELDEYEELHLPNATLISVNDQE--KLADFLSQHK 55
F D ++ D +E HLP+ + N++E ++ + ++H+
Sbjct: 20 FTDLAHLNAYCYDATKERHLPSGVIFPKNEREISQILKYCNEHR 63
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 21.9 bits (45), Expect = 4.3
Identities = 9/24 (37%), Positives = 14/24 (57%)
Query: 33 LPNATLISVNDQEKLADFLSQHKD 56
L + TL+ DQE + +F + KD
Sbjct: 169 LADGTLLDTADQESVENFKNARKD 192
>ref|NP_222802.1| putative [Helicobacter pylori J99]
Length = 457
Score = 21.9 bits (45), Expect = 4.3
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 83 PYYLEGNVYDFEKYGFRMVYDDT 105
PYYL Y F+++ +V+ T
Sbjct: 141 PYYLSPKGYPFDRFQNSLVFPGT 163
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 21.6 bits (44), Expect = 5.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 DVRELDEYEELHLPNATLISVNDQEKLADFLSQHKD 56
DVRE+ E L + +L V + + +FL Q K+
Sbjct: 1129 DVREIPPMEMLASSSCSLAIVLENDVKKEFLRQIKE 1164
>ref|NP_223116.1| FERRIC UPTAKE REGULATION PROTEIN [Helicobacter pylori J99]
Length = 150
Score = 21.6 bits (44), Expect = 5.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 40 SVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHE 78
S++ ++ +FL + VL ++GRR AAK H+
Sbjct: 60 SISSVYRILNFLEKENFICVLETSKSGRRYEIAAKEHHD 98
>ref|NP_223719.1| ALPHA-(1,3)-FUCOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 436
Score = 21.2 bits (43), Expect = 7.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 2 LEDYAISLEEVNFND 16
L DYAI +E++F D
Sbjct: 103 LFDYAIGFDELDFRD 117
>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 442
Score = 21.2 bits (43), Expect = 7.4
Identities = 10/21 (47%), Positives = 12/21 (56%)
Query: 41 VNDQEKLADFLSQHKDKKVLL 61
VN+ +KL DF D K LL
Sbjct: 207 VNNHKKLTDFKRYSTDMKELL 227
>ref|NP_223314.1| ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 454
Score = 21.2 bits (43), Expect = 7.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 2 LEDYAISLEEVNFND 16
L DYAI +E++F D
Sbjct: 103 LFDYAIGFDELDFRD 117
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 20.8 bits (42), Expect = 9.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 7 ISLEEVNFNDFIVVDVRELDEYEELHLPNATLIS 40
+SLEE++ ND+ + R + +EL LI+
Sbjct: 429 VSLEEISLNDYNLNIPRYIAAKQELEKDLFALIN 462
>ref|NP_223674.1| putative [Helicobacter pylori J99]
Length = 200
Score = 20.8 bits (42), Expect = 9.6
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 25 LDEYEELHLPNATLISVNDQEKLADFLSQHKDK 57
L EYE H P TL E + L Q D+
Sbjct: 64 LYEYELYHNPETTLNFDGSIESIEHILPQKPDQ 96
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.139 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,880
Number of Sequences: 1491
Number of extensions: 5172
Number of successful extensions: 22
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 17
length of query: 110
length of database: 494,079
effective HSP length: 66
effective length of query: 44
effective length of database: 395,673
effective search space: 17409612
effective search space used: 17409612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)