BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645839|ref|NP_208017.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(130 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223864.1| putative [Helicobacter pylori J99] 250 8e-69
ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicoba... 26 0.42
ref|NP_222932.1| putative [Helicobacter pylori J99] 25 0.55
ref|NP_223221.1| putative [Helicobacter pylori J99] 25 0.71
ref|NP_223811.1| putative Outer membrane protein [Helicobac... 25 0.93
ref|NP_224030.1| putative [Helicobacter pylori J99] 24 1.2
ref|NP_223337.1| putative [Helicobacter pylori J99] 24 1.2
ref|NP_223450.1| putative Outer membrane protein [Helicobac... 24 1.6
ref|NP_223708.1| THIOL PEROXIDASE [Helicobacter pylori J99] 23 2.7
ref|NP_223346.1| putative [Helicobacter pylori J99] 22 6.0
ref|NP_223236.1| putative [Helicobacter pylori J99] 22 6.0
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 22 6.0
>ref|NP_223864.1| putative [Helicobacter pylori J99]
Length = 130
Score = 250 bits (639), Expect = 8e-69
Identities = 119/130 (91%), Positives = 126/130 (96%)
Query: 1 MNFVFLWAALGGAIGSSLRYFVGKMMPSKFLMFESFPLGTFSVNIIGCFVIGFMGHLAVK 60
MN VFLWAALGGAIGSSLRYFVGKMMPSKFLMFESFPLGTFSVN+IGCF+IGFMGHLA K
Sbjct: 1 MNLVFLWAALGGAIGSSLRYFVGKMMPSKFLMFESFPLGTFSVNLIGCFIIGFMGHLAAK 60
Query: 61 KVFGDDFGIFFVTGVLGGFTTFSSYGLDTLKLLQKSQYIEAVSYALGTNILGLTGVAIGW 120
KVFGDDFGIFFVTGVLGGFTTFSSYGLDTLKLLQKSQY+EA+SY LGTN+LGL GVAIGW
Sbjct: 61 KVFGDDFGIFFVTGVLGGFTTFSSYGLDTLKLLQKSQYLEAISYVLGTNLLGLIGVAIGW 120
Query: 121 FLAKNFVGIH 130
FLAKNFVG++
Sbjct: 121 FLAKNFVGVN 130
>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
Length = 642
Score = 25.8 bits (55), Expect = 0.42
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 21 FVGKMMPSKFLMFESFPLGTFSVNIIGCFVIGFMGHLAVKKVFGDDFGIFFVTGVLGGFT 80
FVG PS F F + I+G V M L VF F +
Sbjct: 379 FVGSFFPSSSAGFV-----LFCIYILGAVVALVMAKLLKLSVFKGQTESFIME------- 426
Query: 81 TFSSYGLDTLKLLQKSQYIEAVSYALGTNILGLTGVAIGWFLAK 124
Y + +++ S Y +++SY L G + WF+++
Sbjct: 427 -MPKYRFPSWRMVYFSIYTKSLSYLKKAGTYILVGAILIWFMSQ 469
Score = 23.9 bits (50), Expect = 1.6
Identities = 18/63 (28%), Positives = 29/63 (45%), Gaps = 1/63 (1%)
Query: 38 LGTFSVNIIGCFVIGFMGHLAVKKVFGDDFGIFFVTGVLGGFTTFSSYGLDTLKLLQKSQ 97
L ++ +I FVIGFM A ++ G FF + GF F Y L + L ++
Sbjct: 351 LQNYNERLITLFVIGFMSCSARLPIYVLFVGSFFPSS-SAGFVLFCIYILGAVVALVMAK 409
Query: 98 YIE 100
++
Sbjct: 410 LLK 412
>ref|NP_222932.1| putative [Helicobacter pylori J99]
Length = 277
Score = 25.4 bits (54), Expect = 0.55
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 7 WAALGGAIGSSLRYFVGKMMPSKFLM 32
+AALGG +G+ L F+ K++ K LM
Sbjct: 77 FAALGGLMGAILGSFILKVINDKILM 102
>ref|NP_223221.1| putative [Helicobacter pylori J99]
Length = 145
Score = 25.0 bits (53), Expect = 0.71
Identities = 14/39 (35%), Positives = 19/39 (47%), Gaps = 7/39 (17%)
Query: 44 NIIGCFVIGFMGHLAV-------KKVFGDDFGIFFVTGV 75
++IG F+I F G K+F FGI V+GV
Sbjct: 54 HLIGWFLISFSGEFVADMAFGKKSKIFKTRFGISIVSGV 92
>ref|NP_223811.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 24.6 bits (52), Expect = 0.93
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 85 YGLDTLKLLQKS-QYIEAVSYALGTNILGLTGVAIGWFLAKNFVG 128
YG ++L K +++ Y L I GV IGW NF G
Sbjct: 233 YGTHAVQLTYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSG 277
>ref|NP_224030.1| putative [Helicobacter pylori J99]
Length = 553
Score = 24.3 bits (51), Expect = 1.2
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 11/48 (22%)
Query: 18 LRYFVGKM-MPSKFLMF----------ESFPLGTFSVNIIGCFVIGFM 54
L++F + + KFLMF ++ L +FS +G F+IGF+
Sbjct: 4 LKFFASSVTLDEKFLMFLLCNALSNAYKNSDLFSFSKGFLGAFLIGFV 51
>ref|NP_223337.1| putative [Helicobacter pylori J99]
Length = 255
Score = 24.3 bits (51), Expect = 1.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 11 GGAIGSSLRYFVGKMMPSKFLM 32
GG IG+S F+ K++ SK LM
Sbjct: 79 GGLIGASFSGFILKIVSSKILM 100
>ref|NP_223450.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 278
Score = 23.9 bits (50), Expect = 1.6
Identities = 15/41 (36%), Positives = 19/41 (45%), Gaps = 10/41 (24%)
Query: 91 KLLQKSQYIEAVSY----------ALGTNILGLTGVAIGWF 121
KL +K +I A+ Y A GT ILG+ V WF
Sbjct: 159 KLQRKETFINAIFYGVGADFLYKRAFGTLILGVNFVGETWF 199
>ref|NP_223708.1| THIOL PEROXIDASE [Helicobacter pylori J99]
Length = 166
Score = 23.1 bits (48), Expect = 2.7
Identities = 10/28 (35%), Positives = 15/28 (52%)
Query: 61 KVFGDDFGIFFVTGVLGGFTTFSSYGLD 88
K FG+++G+ G L G S + LD
Sbjct: 111 KAFGENYGVLLGKGSLQGLLARSVFVLD 138
>ref|NP_223346.1| putative [Helicobacter pylori J99]
Length = 276
Score = 21.9 bits (45), Expect = 6.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 57 LAVKKVFGDDFGIFFVTGVLG 77
+++ V GDD+G F G G
Sbjct: 61 ISIAAVIGDDYGQFIKVGNFG 81
>ref|NP_223236.1| putative [Helicobacter pylori J99]
Length = 192
Score = 21.9 bits (45), Expect = 6.0
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 1 MNFVFLWAALGGAIGSSLRYFVGK 24
+ L A +GG +G + +++G+
Sbjct: 47 LGLAILVAGIGGFVGDQIYFYIGR 70
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 21.9 bits (45), Expect = 6.0
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 9 ALGGAIGSSLRYFVGKMMPSKFLMFESF 36
AL G I L+ VG MPS F +FES+
Sbjct: 424 ALNG-IMDYLQESVGTHMPSIFKIFESY 450
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.331 0.148 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,885
Number of Sequences: 1491
Number of extensions: 6066
Number of successful extensions: 24
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 13
length of query: 130
length of database: 494,079
effective HSP length: 68
effective length of query: 62
effective length of database: 392,691
effective search space: 24346842
effective search space used: 24346842
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 44 (21.6 bits)