BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645841|ref|NP_208019.1| cytochrome c553
[Helicobacter pylori 26695]
(96 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223866.1| PERIPLASMIC CYTOCHROME C-553 [Helicobacter... 171 2e-45
ref|NP_223296.1| putative [Helicobacter pylori J99] 27 0.055
ref|NP_222942.1| putative [Helicobacter pylori J99] 26 0.12
ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylor... 25 0.21
ref|NP_224179.1| Ubiquinol cytochrome c oxidoreductase, cyt... 25 0.27
ref|NP_224072.1| putative CYTOCHROME C PEROXIDASE [Helicoba... 25 0.36
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 25 0.36
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 23 1.0
ref|NP_223879.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223329.1| glycerol-3-phosphate dehydrogenase [Helico... 23 1.4
ref|NP_224171.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223212.1| cag island protein [Helicobacter pylori J99] 22 1.8
ref|NP_223143.1| Molybdate ABC transporter, periplasmic-bin... 22 1.8
ref|NP_222839.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_224134.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_222831.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 21 3.9
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 21 3.9
ref|NP_223010.1| putative [Helicobacter pylori J99] 21 3.9
ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobact... 21 5.1
ref|NP_223760.1| putative [Helicobacter pylori J99] 21 5.1
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 21 5.1
ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter ... 21 5.1
ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Heli... 20 8.8
>ref|NP_223866.1| PERIPLASMIC CYTOCHROME C-553 [Helicobacter pylori J99]
Length = 96
Score = 171 bits (434), Expect = 2e-45
Identities = 87/96 (90%), Positives = 91/96 (94%)
Query: 1 MKKVIMALGVLAFANALMATDVKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDL 60
MKKVI+ALGVLAFAN LMATDVKAL K CAACHGVKFEKKALGKSKIVNMMSE EIE+DL
Sbjct: 1 MKKVIVALGVLAFANVLMATDVKALVKGCAACHGVKFEKKALGKSKIVNMMSEKEIEEDL 60
Query: 61 MDFKSGANKNPIMSAQAKKLSDEDIKALAKYIPTLK 96
M FKSGANKNP+M+AQAKKLSDEDIKALAKYIPTLK
Sbjct: 61 MAFKSGANKNPVMTAQAKKLSDEDIKALAKYIPTLK 96
>ref|NP_223296.1| putative [Helicobacter pylori J99]
Length = 512
Score = 27.3 bits (59), Expect = 0.055
Identities = 16/65 (24%), Positives = 30/65 (45%)
Query: 10 VLAFANALMATDVKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGANK 69
VL ++ + V +LAK C G + + K L + ++ ++I M F+ +
Sbjct: 386 VLGYSEDFHSHSVISLAKECLRPKGPRIDYKILKDDSLKMALNFSKIMHSAMSFRLAGVE 445
Query: 70 NPIMS 74
N I+S
Sbjct: 446 NEILS 450
>ref|NP_222942.1| putative [Helicobacter pylori J99]
Length = 123
Score = 26.2 bits (56), Expect = 0.12
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 28 SCAACHGVKFEKKAL------GKSKIVNMMSEAEIEKDLMDFKSGANKNPIMSAQAKKLS 81
+CA CHG+K E++ + G+ KI+ + D FK + M + L+
Sbjct: 41 ACAKCHGIKGEQQEITFYYEKGEKKILYAPKINHL--DFKTFKDALSLGKGMMPK-YNLN 97
Query: 82 DEDIKALAKYIPTL 95
E+I+A+ YI +L
Sbjct: 98 LEEIQAIYLYITSL 111
>ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylori J99]
Length = 369
Score = 25.4 bits (54), Expect = 0.21
Identities = 22/79 (27%), Positives = 33/79 (40%), Gaps = 12/79 (15%)
Query: 22 VKALAKS-CAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDF---------KSGANKNP 71
+KA +S C +C G + KAL K N + + + M F K K P
Sbjct: 135 IKAQYQSVCESCDGTGAKDKALENCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTP 194
Query: 72 IMSAQAKK--LSDEDIKAL 88
+ + K L DE+I A+
Sbjct: 195 CQACKGKTYILKDEEIDAI 213
>ref|NP_224179.1| Ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit
[Helicobacter pylori J99]
Length = 285
Score = 25.0 bits (53), Expect = 0.27
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 25 LAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGAN--------KNPIMSAQ 76
+A++C ACHG+K + + S + DL N K+P+ +A+
Sbjct: 60 VAENCTACHGIKSQNIPAPMDSLSASNSFGVVPPDLSHVAGVLNASFLAHFIKDPVKTAK 119
Query: 77 -AKKLSDE 83
+ K +DE
Sbjct: 120 LSHKFNDE 127
Score = 22.3 bits (46), Expect = 1.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 20 TDVKALAKSCAACHGVKFEK 39
+D + A+SC CH + + K
Sbjct: 159 SDKEVFAQSCQRCHSLDYAK 178
>ref|NP_224072.1| putative CYTOCHROME C PEROXIDASE [Helicobacter pylori J99]
Length = 350
Score = 24.6 bits (52), Expect = 0.36
Identities = 22/80 (27%), Positives = 40/80 (49%), Gaps = 10/80 (12%)
Query: 1 MKKVIMALGVLAFANALMATDVKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDL 60
MKK I+ +LAF+ A +D+ + K+ + + E +GK+ + E +I+K
Sbjct: 1 MKKTILLSALLAFSCAHALSDMDLIKKAKES----QLEPMPMGKA-----LKEYQIKK-T 50
Query: 61 MDFKSGANKNPIMSAQAKKL 80
D GA + IM++ +L
Sbjct: 51 RDVGIGAKNSEIMTSAQVEL 70
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 24.6 bits (52), Expect = 0.36
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 50 MMSEAEIEKDLMDFKSGANKNPIMSAQAKKLSDEDIKALA 89
+ + E+EK + F + A+K +++ K+L DI++LA
Sbjct: 261 LKEKEELEKFIARFSANASKAKQATSRQKQLDKLDIQSLA 300
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 23.1 bits (48), Expect = 1.0
Identities = 10/16 (62%), Positives = 12/16 (74%)
Query: 76 QAKKLSDEDIKALAKY 91
Q+ LSDED+ LAKY
Sbjct: 285 QSFSLSDEDVLILAKY 300
>ref|NP_223879.1| putative [Helicobacter pylori J99]
Length = 190
Score = 22.7 bits (47), Expect = 1.4
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 33 HGVKFEKKAL 42
HG+KFE+KAL
Sbjct: 19 HGIKFEQKAL 28
>ref|NP_223329.1| glycerol-3-phosphate dehydrogenase [Helicobacter pylori J99]
Length = 433
Score = 22.7 bits (47), Expect = 1.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 14 ANALMATDVKALAKSCAACH 33
A +M T + L+ C ACH
Sbjct: 381 AKEIMDTKARILSAECGACH 400
>ref|NP_224171.1| putative [Helicobacter pylori J99]
Length = 170
Score = 22.3 bits (46), Expect = 1.8
Identities = 13/62 (20%), Positives = 28/62 (44%)
Query: 27 KSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGANKNPIMSAQAKKLSDEDIK 86
K C + + ALG S V ++ ++ ++FK N+ + Q + S++D
Sbjct: 14 KGCGYKPIATYAQNALGDSVYVKLIVNLPNPENSVEFKDLMNRLVVQRFQNRLASEKDAD 73
Query: 87 AL 88
++
Sbjct: 74 SI 75
>ref|NP_223212.1| cag island protein [Helicobacter pylori J99]
Length = 115
Score = 22.3 bits (46), Expect = 1.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 2 KKVIMALGVLAFANALMA 19
KKV++ LG++ N LMA
Sbjct: 12 KKVVVTLGLVVTTNPLMA 29
>ref|NP_223143.1| Molybdate ABC transporter, periplasmic-binding protein
[Helicobacter pylori J99]
Length = 246
Score = 22.3 bits (46), Expect = 1.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 7 ALGVLAFANALMATDVKALA 26
AL ++ F+NAL+A D+K A
Sbjct: 9 ALLIVFFSNALLAQDLKIAA 28
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 22.3 bits (46), Expect = 1.8
Identities = 16/63 (25%), Positives = 26/63 (40%)
Query: 8 LGVLAFANALMATDVKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGA 67
LG+ A+ + D K L + + + +K + M E E +K DFK
Sbjct: 15 LGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRTEVNKRLEAMKEEERQKYKADFKKAM 74
Query: 68 NKN 70
+KN
Sbjct: 75 DKN 77
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 21.6 bits (44), Expect = 3.0
Identities = 13/42 (30%), Positives = 20/42 (46%)
Query: 1 MKKVIMALGVLAFANALMATDVKALAKSCAACHGVKFEKKAL 42
MKK + L F+N L A ++ L + + H F+ K L
Sbjct: 1 MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVL 42
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 21.6 bits (44), Expect = 3.0
Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 2/52 (3%)
Query: 22 VKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLMDFK-SGANKNPI 72
+K ++C HG F KKA K+ I ++ EIE + K + N+ PI
Sbjct: 228 IKETEQNCQEKHGQLFIKKARIKTGITTGIA-IEIEAECKTPKPAKTNQTPI 278
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 21.2 bits (43), Expect = 3.9
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 62 DFKSGANKNPIMSAQAKKLSD 82
DFK NKN + +K+ D
Sbjct: 394 DFKKDGNKNRLREQDVQKMID 414
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 21.2 bits (43), Expect = 3.9
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 60 LMDFKSGANKNPIMSAQAKKLSDEDIK 86
L +FK+G NK+ QAK + IK
Sbjct: 750 LNEFKNGKNKDFSKVTQAKSDLENSIK 776
>ref|NP_223010.1| putative [Helicobacter pylori J99]
Length = 184
Score = 21.2 bits (43), Expect = 3.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 5 IMALGVLAFANALMATDVKALAKSCAACH 33
++ GVL N + ++ +LAK C + H
Sbjct: 138 LVVKGVLDLLNFGLKNELASLAKRCESFH 166
>ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobacter pylori J99]
Length = 503
Score = 20.8 bits (42), Expect = 5.1
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 48 VNMMSEAEIEKDLMDFKSGANKNPIMSAQAKKLSDEDIKALAKYI 92
V++ + E+ L F + KK+ D+D++A+ + +
Sbjct: 449 VSVKKVVDFEEQLHPFLEAKYPQVLEEIHTKKVLDKDLEAMLRKV 493
>ref|NP_223760.1| putative [Helicobacter pylori J99]
Length = 127
Score = 20.8 bits (42), Expect = 5.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 36 KFEKKALGKSKIVNMMSEAEIEKDL 60
K +KK +K + S +E+EKDL
Sbjct: 47 KKQKKDFQSAKSLKFDSVSELEKDL 71
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 20.8 bits (42), Expect = 5.1
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 35 VKFEKKALGKSKIVNMMSEAEIEKDLMDFKSGANKNPIMSAQAKKLSD 82
++ E + S + + E+EK ++ ++ + + M K+LSD
Sbjct: 400 MQMESEPAKLSSVKRSIQRLEMEKQALEMENKESNHKRMQEILKELSD 447
>ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter pylori J99]
Length = 336
Score = 20.8 bits (42), Expect = 5.1
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 2 KKVIMALGVLAFANALMATDVKALAKSCAACHGVKFEKKALGKSKIVNMMSEAEIEKDLM 61
K I+ V+ + N ++ +V A S G + ALG+ + + I+K++
Sbjct: 143 KNCILYPRVILYQNTILEDNVIIHAGSVIGGDGFGYAHTALGEHVKIEHVGIVRIQKNV- 201
Query: 62 DFKSGANKNPIMSAQAKKLSDEDIK 86
+ GAN + + L E +K
Sbjct: 202 --EIGANTAIDRAVFGETLIKEGVK 224
>ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Helicobacter pylori J99]
Length = 425
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/17 (52%), Positives = 12/17 (69%)
Query: 63 FKSGANKNPIMSAQAKK 79
FKSGA+ +MS A+K
Sbjct: 40 FKSGASIQVVMSKGAQK 56
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.128 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,251
Number of Sequences: 1491
Number of extensions: 3446
Number of successful extensions: 25
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of query: 96
length of database: 494,079
effective HSP length: 72
effective length of query: 24
effective length of database: 386,727
effective search space: 9281448
effective search space used: 9281448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)