BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645842|ref|NP_208020.1| invasion protein (invA)
[Helicobacter pylori 26695]
         (155 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223867.1|  putative DGTP PYROPHOSPHOHYDROLASE [Helico...   311  5e-87
ref|NP_223219.1|  putative [Helicobacter pylori J99]               26  0.57
ref|NP_223587.1|  putative [Helicobacter pylori J99]               25  0.97
ref|NP_223286.1|  AMINOTRANSFERASE [Helicobacter pylori J99]       25  0.97
ref|NP_223024.1|  GUANYLATE KINASE [Helicobacter pylori J99]       25  0.97
ref|NP_224178.1|  Ubiquinol cytochrome c oxidoreductase, cyt...    23  4.8
ref|NP_224134.1|  putative [Helicobacter pylori J99]               22  6.3

>ref|NP_223867.1| putative DGTP PYROPHOSPHOHYDROLASE [Helicobacter pylori J99]
          Length = 157

 Score =  311 bits (797), Expect = 5e-87
 Identities = 147/155 (94%), Positives = 152/155 (97%)

Query: 1   MLHKKYRPNVAAIIMSPDYPNACEVFIAERIDIEGAWQFPQGGIDEGETPLEALHRELLE 60
           MLHKKYRPNVAAIIMSPDYPN CEVFIAERIDIEGAWQFPQGGIDEGETPLEAL+RELLE
Sbjct: 1   MLHKKYRPNVAAIIMSPDYPNTCEVFIAERIDIEGAWQFPQGGIDEGETPLEALYRELLE 60

Query: 61  EIGTNEIEILAQYPRWIAYDFPSNMEHKFYSFDGQKQRYFLVRLKHTNNIDLNKHTPEFR 120
           EIGTNEIEILAQYPRWIAYDFPSNMEHKFYSFDGQKQRYFLVRLKH NNIDLNKHTPEFR
Sbjct: 61  EIGTNEIEILAQYPRWIAYDFPSNMEHKFYSFDGQKQRYFLVRLKHVNNIDLNKHTPEFR 120

Query: 121 AYQFIHLKDLLKRIVPFKRQVYRQVIAYFKREGYL 155
           +YQFI LKDLLK+IVPFKRQVYRQVIAYF++EGYL
Sbjct: 121 SYQFIQLKDLLKKIVPFKRQVYRQVIAYFRKEGYL 155



>ref|NP_223219.1| putative [Helicobacter pylori J99]
          Length = 321

 Score = 25.8 bits (55), Expect = 0.57
 Identities = 17/63 (26%), Positives = 31/63 (48%), Gaps = 3/63 (4%)

Query: 57  ELLEEIGTNEIEILAQYPRWIAYDFPSNMEHKFYSFDGQKQRYFLVRLKHTNNIDLNKHT 116
           ++L+E+G  EI    +  +  + +  S +E ++ S      R F+  L+H   IDL+   
Sbjct: 41  QILKEVGAAEI---CKATKIASKNIHSILEKRYESLSRVHARGFIQILEHEYKIDLSAWV 97

Query: 117 PEF 119
            EF
Sbjct: 98  KEF 100



>ref|NP_223587.1| putative [Helicobacter pylori J99]
          Length = 161

 Score = 25.0 bits (53), Expect = 0.97
 Identities = 11/18 (61%), Positives = 11/18 (61%)

Query: 14 IMSPDYPNACEVFIAERI 31
          I SP YP   E F AERI
Sbjct: 5  IFSPQYPTELEEFYAERI 22



>ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99]
          Length = 375

 Score = 25.0 bits (53), Expect = 0.97
 Identities = 11/43 (25%), Positives = 23/43 (52%), Gaps = 2/43 (4%)

Query: 41  QGGIDEGETPLEALHRELLEEIGTNEIEILAQYPRWIAYDFPS 83
           Q G  +    +E    EL+  +G+ E+  L  +P ++ +D+P+
Sbjct: 67  QRGFFKRRFKIELKENELVSTLGSREV--LFNFPSFVLFDYPN 107



>ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99]
          Length = 206

 Score = 25.0 bits (53), Expect = 0.97
 Identities = 9/17 (52%), Positives = 12/17 (69%)

Query: 14  IMSPDYPNACEVFIAER 30
           I+   YPNAC VFI+ +
Sbjct: 109 ILKKHYPNACSVFISTK 125



>ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
           [Helicobacter pylori J99]
          Length = 412

 Score = 22.7 bits (47), Expect = 4.8
 Identities = 10/39 (25%), Positives = 20/39 (50%)

Query: 99  YFLVRLKHTNNIDLNKHTPEFRAYQFIHLKDLLKRIVPF 137
           ++ +R+ H NN +  +   E    +FI  K    +++PF
Sbjct: 211 FYSLRILHVNNQEGEEIDFELEEKKFIEGKKKESKVIPF 249



>ref|NP_224134.1| putative [Helicobacter pylori J99]
          Length = 479

 Score = 22.3 bits (46), Expect = 6.3
 Identities = 11/16 (68%), Positives = 13/16 (80%)

Query: 50 PLEALHRELLEEIGTN 65
          PL+AL  ELLEEI T+
Sbjct: 16 PLQALVIELLEEIKTS 31



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.324    0.143    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,006
Number of Sequences: 1491
Number of extensions: 7830
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 8
length of query: 155
length of database: 494,079
effective HSP length: 70
effective length of query: 85
effective length of database: 389,709
effective search space: 33125265
effective search space used: 33125265
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)