BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645844|ref|NP_208022.1| hypothetical protein
[Helicobacter pylori 26695]
(180 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223869.1| putative [Helicobacter pylori J99] 354 e-100
ref|NP_223424.1| MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNT... 27 0.42
ref|NP_223143.1| Molybdate ABC transporter, periplasmic-bin... 26 0.72
ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori ... 26 0.72
ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicob... 25 0.94
ref|NP_222789.1| UREASE BETA SUBUNIT [Helicobacter pylori J99] 24 2.1
ref|NP_223415.1| putative [Helicobacter pylori J99] 24 2.7
ref|NP_223531.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helic... 23 3.6
ref|NP_223331.1| putative [Helicobacter pylori J99] 23 4.7
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 23 4.7
ref|NP_223888.1| SHIKIMATE 5-DEHYDROGENASE [Helicobacter py... 23 6.1
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 22 7.9
ref|NP_223495.1| putative Outer membrane protein [Helicobac... 22 7.9
>ref|NP_223869.1| putative [Helicobacter pylori J99]
Length = 180
Score = 354 bits (909), Expect = e-100
Identities = 173/180 (96%), Positives = 177/180 (98%)
Query: 1 MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRHW 60
MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSR W
Sbjct: 1 MKNFYDWIKEFVRDQGEFIAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRRW 60
Query: 61 FLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIEMTYQNPMFWHVGKIEN 120
FLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIE+TYQNPMFWHVG++EN
Sbjct: 61 FLNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIELTYQNPMFWHVGRVEN 120
Query: 121 EGLKTILLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSVLYNKVTL 180
EGLKT+LLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFS LYNKV L
Sbjct: 121 EGLKTLLLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSALYNKVAL 180
>ref|NP_223424.1| MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN A
[Helicobacter pylori J99]
Length = 209
Score = 26.6 bits (57), Expect = 0.42
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 148 LKEHDSLLDYKLLQLFKLFENALFS 172
LK + SLL+Y+ +L KLF+ + S
Sbjct: 36 LKSYPSLLEYQYTRLLKLFKQVIIS 60
>ref|NP_223143.1| Molybdate ABC transporter, periplasmic-binding protein
[Helicobacter pylori J99]
Length = 246
Score = 25.8 bits (55), Expect = 0.72
Identities = 13/29 (44%), Positives = 15/29 (50%)
Query: 83 IDFNASSFYPKNDANLSLATIEMTYQNPM 111
I F A S K D NLS I+ T NP+
Sbjct: 178 IGFGALSLIDKKDKNLSYFIIDKTLYNPI 206
>ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori J99]
Length = 675
Score = 25.8 bits (55), Expect = 0.72
Identities = 19/69 (27%), Positives = 36/69 (51%), Gaps = 5/69 (7%)
Query: 111 MFWHVGKIENEGLKTILLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENAL 170
+F H+ E + L+ K+PSF++ F EL++ L E +++ L +LF E+ +
Sbjct: 155 LFAHIKDKETQSASYALI-KLPSFIFRFVELEKGLFALAE--EIVEAHLEELF--LEHEI 209
Query: 171 FSVLYNKVT 179
+ +VT
Sbjct: 210 LDCMAFRVT 218
>ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicobacter pylori J99]
Length = 745
Score = 25.4 bits (54), Expect = 0.94
Identities = 17/61 (27%), Positives = 29/61 (46%), Gaps = 3/61 (4%)
Query: 69 LNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIEMTYQNPMFWHVGKIENEGLKTILL 128
+N ++KE +L F + K D L +E + + H+ +I+N G+ T LL
Sbjct: 527 INTLEIKENGILV---FVGRAINEKEDELLGAFVLEDLPKKGVKEHIAQIKNLGINTFLL 583
Query: 129 S 129
S
Sbjct: 584 S 584
>ref|NP_222789.1| UREASE BETA SUBUNIT [Helicobacter pylori J99]
Length = 569
Score = 24.3 bits (51), Expect = 2.1
Identities = 11/23 (47%), Positives = 13/23 (55%)
Query: 95 DANLSLATIEMTYQNPMFWHVGK 117
DAN S+ T + Y MF H GK
Sbjct: 462 DANASIPTPQPVYYREMFAHHGK 484
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 23.9 bits (50), Expect = 2.7
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 9 KEFVRDQGEFIAQQSGWLELER 30
KEFVRD+ ++ ++ LE ER
Sbjct: 101 KEFVRDEKRYLEKEKKELEKER 122
>ref|NP_223531.1| putative [Helicobacter pylori J99]
Length = 155
Score = 23.5 bits (49), Expect = 3.6
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 62 LNYILSNLNPKDLKERPLLSVIDFNASSFYPKNDANLSLATIEMTYQNPM 111
+NY +SNLN ++ +PL S K +L+ T E T+ +P+
Sbjct: 107 INYSISNLNRENPTPKPLTS------QEVLLKQQESLNEFTKEPTHLSPL 150
>ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 290
Score = 23.5 bits (49), Expect = 3.6
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 60 WFLNYILSNLNPKDL 74
W+ Y++ N +PKD+
Sbjct: 58 WYQQYVMDNKDPKDI 72
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 23.1 bits (48), Expect = 4.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 131 IPSFLWLFEELKED 144
IP F +LFE+LKE+
Sbjct: 547 IPGFEYLFEDLKEN 560
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 23.1 bits (48), Expect = 4.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 63 NYILSNLNPKDLKERPLLSVIDFNASSFYPK 93
N + NPKD + + I +++FYPK
Sbjct: 553 NLMAGYANPKDFFVKKIAEGIGMISAAFYPK 583
>ref|NP_223888.1| SHIKIMATE 5-DEHYDROGENASE [Helicobacter pylori J99]
Length = 266
Score = 22.7 bits (47), Expect = 6.1
Identities = 16/63 (25%), Positives = 29/63 (45%), Gaps = 9/63 (14%)
Query: 118 IENEGLKTILLSKIPSFLWLFEELKEDCLLLKEHDSLLDYKLLQLFKLFENALFSVLYNK 177
++ +GLK +L++ L F+ L DC + + F L NA + L+N+
Sbjct: 140 LQKQGLKVSVLNRSARGLDFFQRLGCDCFMEPPKSA---------FDLIINATSASLHNE 190
Query: 178 VTL 180
+ L
Sbjct: 191 LPL 193
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 22.3 bits (46), Expect = 7.9
Identities = 28/114 (24%), Positives = 47/114 (40%), Gaps = 12/114 (10%)
Query: 19 IAQQSGWLELERSSYAKLIAQTISHVLNGGSLLVSADSSRHWFLNYILSN-----LNPKD 73
+AQQ+GW++ E S KL S + G+ + A H L++ N P
Sbjct: 144 LAQQNGWIDFE--SGVKLAKSRFSVIRGFGAKIYRA--LIHLMLDFNEKNGFEIIYTPAL 199
Query: 74 LKERPLL---SVIDFNASSFYPKNDANLSLATIEMTYQNPMFWHVGKIENEGLK 124
+ E+ L + F F +N+ + T E+T N + +EN +K
Sbjct: 200 VNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLYNDTIISVENLPIK 253
>ref|NP_223495.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 587
Score = 22.3 bits (46), Expect = 7.9
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 157 YKLLQLFKLFENALFSVLYN 176
Y++ ++F++ +FSV+YN
Sbjct: 360 YRVGSSLRVFDHGMFSVVYN 379
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,371
Number of Sequences: 1491
Number of extensions: 9402
Number of successful extensions: 26
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 14
length of query: 180
length of database: 494,079
effective HSP length: 72
effective length of query: 108
effective length of database: 386,727
effective search space: 41766516
effective search space used: 41766516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)