BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645847|ref|NP_208025.1| hypothetical protein
[Helicobacter pylori 26695]
(153 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223872.1| putative [Helicobacter pylori J99] 297 1e-82
ref|NP_223662.1| putative [Helicobacter pylori J99] 26 0.56
ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobact... 25 0.95
ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 24 1.6
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 23 2.8
ref|NP_223761.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223847.1| abc transporter, ATP-binding protein [Heli... 23 3.6
ref|NP_223756.1| ADENYLOSUCCINATE LYASE [Helicobacter pylor... 23 3.6
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 23 3.6
ref|NP_223180.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_222962.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 23 4.7
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 23 4.7
ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 22 6.1
ref|NP_223158.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_222888.1| abc transporter, ATP-binding protein [Heli... 22 6.1
ref|NP_222887.1| sialic acid synthase [Helicobacter pylori ... 22 6.1
ref|NP_222874.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_224005.1| ROD SHAPE-DETERMINING PROTEIN [Helicobacte... 22 8.0
>ref|NP_223872.1| putative [Helicobacter pylori J99]
Length = 153
Score = 297 bits (760), Expect = 1e-82
Identities = 145/153 (94%), Positives = 150/153 (97%)
Query: 1 MAVSSINQFDSNLYGLLNAKSAPKEDLAPIESTEKVEREKKDAPTENLPFDPDKRETYGF 60
MAVSSINQFDSNLYGLLNAKSAPKEDLAPIE EK+EREKKDAPTENLPF+PDKRETYGF
Sbjct: 1 MAVSSINQFDSNLYGLLNAKSAPKEDLAPIEGAEKIEREKKDAPTENLPFNPDKRETYGF 60
Query: 61 LVLELMSDREYEAFLRATAGMDESQKRLAAQSLYSLTDFYNGKFSKEVENAPKQPINGLH 120
LVLELMSDREYEAFLRATAGMDESQKRLAAQSLYSLTDFYNGKFSKEVENAPKQP+NGLH
Sbjct: 61 LVLELMSDREYEAFLRATAGMDESQKRLAAQSLYSLTDFYNGKFSKEVENAPKQPVNGLH 120
Query: 121 KKALQTFNATNHNAFLQRYQNAYNNPSTMDVIL 153
KKA QTFNATNHNAFLQRYQNAYNNPS+MDV+L
Sbjct: 121 KKAFQTFNATNHNAFLQRYQNAYNNPSSMDVVL 153
>ref|NP_223662.1| putative [Helicobacter pylori J99]
Length = 668
Score = 25.8 bits (55), Expect = 0.56
Identities = 12/34 (35%), Positives = 17/34 (49%)
Query: 84 SQKRLAAQSLYSLTDFYNGKFSKEVENAPKQPIN 117
+Q + A +Y+ T F NG S +N P P N
Sbjct: 154 AQTKAANDPMYANTPFSNGSDSSFYDNNPNSPSN 187
>ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobacter pylori J99]
Length = 503
Score = 25.0 bits (53), Expect = 0.95
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 55 RETYGFLVLELMSDREYEAFLRATAGMDESQKR 87
++ G L L+L RE +AF + + +DE+ K+
Sbjct: 377 KQVSGTLRLDLAQYRELQAFTQFASDLDEASKK 409
>ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 359
Score = 24.3 bits (51), Expect = 1.6
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 119 LHKKALQTFNATNHNA---FLQRYQNAY 143
+HK + + N TNHN F YQN +
Sbjct: 318 IHKMSAKYLNKTNHNGWKFFYAYYQNQF 345
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 23.5 bits (49), Expect = 2.8
Identities = 14/58 (24%), Positives = 25/58 (42%)
Query: 88 LAAQSLYSLTDFYNGKFSKEVENAPKQPINGLHKKALQTFNATNHNAFLQRYQNAYNN 145
L +Q++ +NGK KE + PK+ I +++ L + Y+ NN
Sbjct: 988 LLSQAILEEPFSHNGKDYKEGDQIPKEEIASINRFTLASLVKKYSKEVQNHYEITKNN 1045
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 23.5 bits (49), Expect = 2.8
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 67 SDREYEAFLRATAGMDESQKRLAAQSLYSLTDFYNGKFSKEVENAPKQPINGLHKKALQT 126
SD A + E +K+L A S+YSL + + + P + L AL
Sbjct: 522 SDHAIAVLSHYEAKLKELEKKLDADSIYSLKNIVANNLNFDKATHPNVGDSNL---ALLM 578
Query: 127 FN----ATNHNAFLQRYQNAYNN 145
FN T L +Q A++N
Sbjct: 579 FNMPRTKTQGIELLNCWQKAFSN 601
>ref|NP_223847.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 578
Score = 23.1 bits (48), Expect = 3.6
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 7 NQFDSNLYGLLNAKSAPKEDLAPIESTEKV 36
NQ +N+ +K+ +EDL P++ EK+
Sbjct: 336 NQLATNVVFKSLSKTIVEEDLVPLDFNEKI 365
>ref|NP_223756.1| ADENYLOSUCCINATE LYASE [Helicobacter pylori J99]
Length = 440
Score = 23.1 bits (48), Expect = 3.6
Identities = 13/41 (31%), Positives = 19/41 (45%)
Query: 84 SQKRLAAQSLYSLTDFYNGKFSKEVENAPKQPINGLHKKAL 124
S +R A L+ +DF + + +EN P N L AL
Sbjct: 307 SVERFALPDLFITSDFMLSRLNSVIENLVVYPKNMLKNLAL 347
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 23.1 bits (48), Expect = 3.6
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 82 DESQKRLAAQSLYSLTDFYNGKFSKE-------VENAPKQPINGLHKKALQTFNAT 130
DE +K +Q LY+L Y +E +N P ++ L+ F T
Sbjct: 124 DEDKKPYTSQHLYALYSLYTNALKQEDFSAWLSSKNPEHAPYAAFYENILEEFENT 179
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 23.1 bits (48), Expect = 3.6
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 20 KSAPKEDLAPIESTE-KVEREKKDAPTENLPFDPDKRETYGFLVLEL--MSDREYEAF 74
K KE E E K+++EKK + F P RE + L E+ + +R E F
Sbjct: 559 KKEKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSPHSRELFDILRKEIKTLDERVTENF 616
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 23.1 bits (48), Expect = 3.6
Identities = 17/51 (33%), Positives = 21/51 (40%), Gaps = 8/51 (15%)
Query: 15 GLLNAKSAPKEDLA--------PIESTEKVEREKKDAPTENLPFDPDKRET 57
G + AK PK+ A P E+ E E +K PT P P K T
Sbjct: 160 GKILAKMDPKKAAALTELWQKPPKENKENKESQKTTDPTPPTPPTPPKEPT 210
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 22.7 bits (47), Expect = 4.7
Identities = 8/23 (34%), Positives = 15/23 (64%)
Query: 20 KSAPKEDLAPIESTEKVEREKKD 42
++ PK+++AP + T K E K +
Sbjct: 223 QAKPKQEVAPAKETPKTETPKTE 245
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 22.7 bits (47), Expect = 4.7
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 70 EYEAFLRATAGMDESQKRLAAQSLYSLTDFYNGKFS 105
+Y+ F+R T + + A + ++ D Y G +S
Sbjct: 87 DYDGFIRTTDSEHQKCVQNAFEIMFEKGDIYKGTYS 122
>ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 439
Score = 22.3 bits (46), Expect = 6.1
Identities = 10/19 (52%), Positives = 12/19 (62%)
Query: 32 STEKVEREKKDAPTENLPF 50
S E +EREK+ A E PF
Sbjct: 97 SAEFLEREKEKAKNEKRPF 115
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 22.3 bits (46), Expect = 6.1
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 67 SDREYEAFLRATAGMDESQKRLAAQSLYSLTDFY--NGKFSKEVENAPKQPINGLHKKAL 124
SD A + E K+L A S+YSL + N F K P G AL
Sbjct: 442 SDHAIAVLSHYEAKLKELDKKLDADSIYSLKNIVAKNLNFDKAT-----HPNVGDSNLAL 496
Query: 125 QTFN----ATNHNAFLQRYQNAYNN 145
+N T L R+Q ++N
Sbjct: 497 LMYNMPRTKTQGIELLNRWQKEFSN 521
>ref|NP_222888.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 213
Score = 22.3 bits (46), Expect = 6.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 2 AVSSINQFDSNLYGLLNAKSAPKEDLA 28
A+ + F+ LY +N + PKE LA
Sbjct: 4 AIDISHAFEKPLYNGVNLRIKPKESLA 30
>ref|NP_222887.1| sialic acid synthase [Helicobacter pylori J99]
Length = 340
Score = 22.3 bits (46), Expect = 6.1
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 85 QKRLAAQSLYSLTDFYNGKFSKEVENAPKQPINGLHKKALQTFNATNHNAFLQRYQNAYN 144
++R A+SL+ + D G+ +P GLH K + + FL+ N
Sbjct: 274 ERRFFARSLFVIKDIQKGEALTSDNIKALRPNLGLHPKFYKEILGQKASKFLKA-----N 328
Query: 145 NPSTMDVI 152
P + D I
Sbjct: 329 TPLSADDI 336
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 22.3 bits (46), Expect = 6.1
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 11 SNLYGLLNAKSA-----PKEDLAPIESTEKVEREKKDA 43
S+L N+K+A PK + A IE+ EK+ EK++A
Sbjct: 43 SHLQNTPNSKNANTPLEPK-NAAKIETQEKITEEKEEA 79
>ref|NP_224005.1| ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 347
Score = 21.9 bits (45), Expect = 8.0
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 9 FDSNLYGLLNAKSAPKEDLAPIESTEKVEREKKD 42
FDS Y +L S KE L ++ + R KD
Sbjct: 47 FDSKAYDILAVGSEAKEMLGKTPNSIRAIRPMKD 80
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.129 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,911
Number of Sequences: 1491
Number of extensions: 7713
Number of successful extensions: 33
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 21
length of query: 153
length of database: 494,079
effective HSP length: 70
effective length of query: 83
effective length of database: 389,709
effective search space: 32345847
effective search space used: 32345847
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)