BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645850|ref|NP_208028.1| hypothetical protein
[Helicobacter pylori 26695]
(183 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223875.1| putative [Helicobacter pylori J99] 363 e-102
ref|NP_224143.1| putative [Helicobacter pylori J99] 31 0.018
ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicob... 30 0.030
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 29 0.087
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 28 0.11
ref|NP_223787.1| putative [Helicobacter pylori J99] 28 0.19
ref|NP_223402.1| putative [Helicobacter pylori J99] 27 0.25
ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (... 26 0.56
ref|NP_222940.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_222744.1| CITRATE SYNTHASE [Helicobacter pylori J99] 25 1.6
ref|NP_224163.1| 30S RIBOSOMAL PROTEIN S2 [Helicobacter pyl... 24 2.1
ref|NP_223971.1| putative [Helicobacter pylori J99] 24 2.1
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 24 2.1
ref|NP_223617.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223039.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 23 4.8
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 23 6.2
ref|NP_223788.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 23 6.2
ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter p... 22 8.2
ref|NP_222916.1| putative Outer membrane protein [Helicobac... 22 8.2
ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobact... 22 8.2
>ref|NP_223875.1| putative [Helicobacter pylori J99]
Length = 183
Score = 363 bits (931), Expect = e-102
Identities = 181/183 (98%), Positives = 182/183 (98%)
Query: 1 MRLKLTHINHISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELL 60
MRLKLTHI HISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELL
Sbjct: 1 MRLKLTHITHISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELL 60
Query: 61 EENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERCNDLSHQILNKILDEDLIMFSV 120
EENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERC+DLSHQILNKILDEDLIMFSV
Sbjct: 61 EENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERCSDLSHQILNKILDEDLIMFSV 120
Query: 121 SENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRRK 180
SENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRRK
Sbjct: 121 SENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRRK 180
Query: 181 GFL 183
GFL
Sbjct: 181 GFL 183
>ref|NP_224143.1| putative [Helicobacter pylori J99]
Length = 235
Score = 31.2 bits (69), Expect = 0.018
Identities = 35/121 (28%), Positives = 53/121 (42%), Gaps = 9/121 (7%)
Query: 46 VKKENAIDEQARELLEENTD-EIEFMRMDERQLF---WMIKRQIAQKEGFHLFWEERCND 101
+K+ I EQ + L +N + E + + LF +++K + K+ F L +C
Sbjct: 52 IKRLPWIKEQQQNFLNQNRQSQREMLERESHYLFGKRYLLKIEHTIKKHFVL-QSPKCLI 110
Query: 102 LSHQILNKILDEDLIMFSVSENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVG 161
L H L+ L V EN R ++ + I TY YE I NE + K K K G
Sbjct: 111 L-HVHQKTSLENRL---KVLENYYRQVLREKIQTYINQYEKILNESIQSFKIQKMKRIWG 166
Query: 162 S 162
S
Sbjct: 167 S 167
>ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99]
Length = 395
Score = 30.4 bits (67), Expect = 0.030
Identities = 16/58 (27%), Positives = 32/58 (54%), Gaps = 2/58 (3%)
Query: 17 NDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELLEENTDEIEFMRMDE 74
+D I E P+E++ ++I+G L K +N +D AR L+ E +++ +++ E
Sbjct: 5 SDLIECIAYEKNLPKEMISKVIQGCLLKMA--QNELDPLARYLVVEENKQLQLIQLVE 60
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 28.9 bits (63), Expect = 0.087
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 44 KSVKKENAIDEQARELLEENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERCNDLS 103
KSVK+ + I + +L + DEI + ++L +++ Q A K HL + ER N +
Sbjct: 74 KSVKESDLIVVKLTKLGTLHLDEIYEI---VKRLRYIVVLQNAFKPFTHLKFHERLNAI- 129
Query: 104 HQILNKILDEDLIMFSVSENLIRNLIYKSIDTYSKAYESIENEVHEKIKHY 154
IL + DLI+ E I+ ++D +++ ++ E + I HY
Sbjct: 130 --ILPPFFN-DLILLLDDEGQIKQGANATLDALNESLNRLKKESTKIIHHY 177
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 28.5 bits (62), Expect = 0.11
Identities = 16/54 (29%), Positives = 26/54 (47%)
Query: 99 CNDLSHQILNKILDEDLIMFSVSENLIRNLIYKSIDTYSKAYESIENEVHEKIK 152
C ++ ++ N LD + +MF V+ I N I Y + Y S+ EK+K
Sbjct: 88 CREVMIELENHYLDIEEMMFFVTFLNIENFTRSEIIEYVREYRSLSRIQKEKLK 141
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 27.7 bits (60), Expect = 0.19
Identities = 29/127 (22%), Positives = 61/127 (47%), Gaps = 15/127 (11%)
Query: 31 RELLCELIEGILEKSVKKENAIDEQARELLEENTDEIEFMRMDERQLFWMIKR--QIAQK 88
++L+ E +E EK+ K+ I +E T E + R + FW+IK+ +++
Sbjct: 580 KDLMKETME---EKTNIKQIIILTHNTYFYKEITLEYDLKRYQGKYSFWIIKKDNNVSKI 636
Query: 89 EGFHLFWEERCNDLSHQILNKILDEDLIMFSVSENLIRNLI---------YKSIDTYSKA 139
+G+ + +L Q + + + + S+ +N++R +I +K D+ S+
Sbjct: 637 KGYKENPIKNSYELLWQEVKQAKENNASWVSL-QNIMRRIIEYYFRILGGFKHNDSLSEC 695
Query: 140 YESIENE 146
+E+IE E
Sbjct: 696 FENIEEE 702
>ref|NP_223402.1| putative [Helicobacter pylori J99]
Length = 400
Score = 27.3 bits (59), Expect = 0.25
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 115 LIMFSVSENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYE 166
LI + L R ++ +++ YS+++E I + + E KH +K + + +E
Sbjct: 60 LIKSEKATPLKREILKQALRIYSQSFEVISHNLQENSKHASQKKALDLETFE 111
>ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 272
Score = 26.2 bits (56), Expect = 0.56
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 94 FWEERC-NDLSHQILNKILDEDLIMFSVSENLIRNLIYKSIDTYSKAYESIENEVHEKIK 152
F+ + C N + H++ N+ +D +I+ S + +RN Y+ A+E+I NE+ IK
Sbjct: 16 FYVDSCVNFMQHKLQNESID--MILTSPPYDNLRNY-----QGYTFAFENIANEIFRVIK 68
>ref|NP_222940.1| putative [Helicobacter pylori J99]
Length = 176
Score = 25.0 bits (53), Expect = 1.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 25 LELKAPRELLCELIEGILEKSVKKENAID 53
L KA ++ ++ E +LEKS+KKE +D
Sbjct: 30 LLFKARQDTGAKIKEWVLEKSLKKEERLD 58
>ref|NP_222744.1| CITRATE SYNTHASE [Helicobacter pylori J99]
Length = 426
Score = 24.6 bits (52), Expect = 1.6
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 129 IYKSIDTYSKAYESIENEVHEK-IKHYKRKLPVGSDEYELVFERLY 173
+YKS D +K + +++E+H+K +K +R + + E+ + Y
Sbjct: 316 VYKSYDPRAKILKGLKDELHQKGVKMDERLSEIAAKVEEIALKDEY 361
>ref|NP_224163.1| 30S RIBOSOMAL PROTEIN S2 [Helicobacter pylori J99]
Length = 264
Score = 24.3 bits (51), Expect = 2.1
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 33 LLC-ELIEGILE-KSVKKENAIDEQARELLEENTDEIEFMRMDER-QLFWMIKRQIAQ 87
L C E+ E ILE + + +E + +EN++EIEF+ +E+ ++ I+++I Q
Sbjct: 210 LFCKEMSEAILEGRELMQEEIVHA------DENSEEIEFVSNEEKEEMLAEIQKEITQ 261
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 24.3 bits (51), Expect = 2.1
Identities = 25/108 (23%), Positives = 54/108 (49%), Gaps = 12/108 (11%)
Query: 59 LLEENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERCNDLS-----HQILN--KIL 111
LL+++ E+E ++ E+ L ++ + KE LF +E C LS + N ++
Sbjct: 92 LLKQSALELEKLQALEKHLKESMEHERLIKESQALFLQEHCPYLSGVKNLEEASNALEVQ 151
Query: 112 DEDLIMFSVSENLIRNLIYKSIDTYSK----AYESIENEVHEKIKHYK 155
+++ +F + E + +L+ + +D S + +ENE+ ++ H K
Sbjct: 152 EKNNALFLLKEPKLFHLLSR-LDLMSALNALCDQVLENEIQDQQSHNK 198
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 24.3 bits (51), Expect = 2.1
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 79 WMIKRQIAQKEGFHLFWEERCNDLSHQILNKILDEDLIMFSVSENLIRNLIYKSIDTYSK 138
W + R + K+ LF + +LS + ++DE LI+ + Y
Sbjct: 17 WPLSRSLYPKQFLKLFDHKSLFELSFKRNASLVDETLIVCNEKH-------------YFL 63
Query: 139 AYESIENEVHEK 150
A E I+NE+ K
Sbjct: 64 ALEEIKNEIKNK 75
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 23.5 bits (49), Expect = 3.7
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 123 NLIRNLIYKSIDTYSKAYESIE---------NEVHEKIKHYKRK----LPVGSDEYELVF 169
+L+ LI++ ++ KA + N + +++ Y K L ++YE F
Sbjct: 69 SLLNALIFEGVEVLPKAATPMTASLTILKYANTLSAEVEFYSLKDIAELENEHEKYEREF 128
Query: 170 ERLYEEELRRK 180
R+ EEE++++
Sbjct: 129 NRIVEEEVKKQ 139
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 23.5 bits (49), Expect = 3.7
Identities = 12/39 (30%), Positives = 22/39 (55%)
Query: 36 ELIEGILEKSVKKENAIDEQARELLEENTDEIEFMRMDE 74
E+I E+S KE++ DE ++ L T+E+ + +E
Sbjct: 139 EIISKKQEESHHKEDSNDENHKDKLSNITEEMILKKQEE 177
>ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 632
Score = 23.1 bits (48), Expect = 4.8
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 143 IENEVHEKIKHYKRKLPVGSDEYELVFERLYEEEL 177
I+N + E+ +H K+ L + E++ + L+++E+
Sbjct: 567 IKNLLEERYQHVKQTLSDYREAIEIMVKELFDKEV 601
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 22.7 bits (47), Expect = 6.2
Identities = 7/29 (24%), Positives = 18/29 (61%)
Query: 147 VHEKIKHYKRKLPVGSDEYELVFERLYEE 175
+H +++ K ++ G DE +++ + L +E
Sbjct: 571 IHREVERLKERVSHGHDEDQVLLDELLKE 599
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 22.7 bits (47), Expect = 6.2
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 119 SVSENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEE 176
+VSE L + + ++ + ++ E EV+EK Y+ + E + ER E++
Sbjct: 19 NVSEALYKQIESENQSRFLAQQKAFEKEVNEKRAQYQSYFKNLEQKEEALKERAKEQQ 76
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 22.7 bits (47), Expect = 6.2
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 102 LSHQILNKILDEDLIMFSVSENLIRNLI 129
+++ +LN+ L +D++ S+ L+ N+I
Sbjct: 1565 VANDLLNEFLGQDVVKKLESQGLVSNII 1592
>ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 390
Score = 22.3 bits (46), Expect = 8.2
Identities = 12/28 (42%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
Query: 36 ELIEGILEKSVKKENAIDEQARELLEEN 63
EL++ I K +KKEN +D + E+L N
Sbjct: 71 ELLKAIAFK-LKKENNLDYEPSEILVSN 97
>ref|NP_222916.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 438
Score = 22.3 bits (46), Expect = 8.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 153 HYKRKLPVGSDEYELVFERLY 173
+YK+K+ G + LV+E Y
Sbjct: 199 NYKQKINYGMHNFNLVYENKY 219
>ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 22.3 bits (46), Expect = 8.2
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 22 SKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELLEENTDEIEFMRMDERQLFWMI 81
S + E+ + ++EGI KEN + +EL E +E++ + + + +L I
Sbjct: 42 SSIEEISVASKEYLSVLEGI------KENKELLEDKELSELAKEELKILEIQKSELETAI 95
Query: 82 KRQIAQKE 89
K+ + K+
Sbjct: 96 KQLLIPKD 103
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.138 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,120
Number of Sequences: 1491
Number of extensions: 9663
Number of successful extensions: 52
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 23
length of query: 183
length of database: 494,079
effective HSP length: 72
effective length of query: 111
effective length of database: 386,727
effective search space: 42926697
effective search space used: 42926697
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)