BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645854|ref|NP_208032.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(190 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223879.1| putative [Helicobacter pylori J99] 353 1e-99
ref|NP_224115.1| putative [Helicobacter pylori J99] 31 0.018
ref|NP_222872.1| putative histidine kinase sensor protein [... 26 0.77
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 25 1.0
ref|NP_223693.1| putative AMINOTRANSFERASE [Helicobacter py... 25 1.3
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 25 1.3
ref|NP_223106.1| putative proline peptidase [Helicobacter p... 25 1.7
ref|NP_223578.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 24 2.9
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 23 3.8
ref|NP_222786.1| UREASE ACCESSORY PROTEIN [Helicobacter pyl... 23 3.8
ref|NP_224101.1| putative [Helicobacter pylori J99] 23 5.0
ref|NP_222989.1| 3-DEHYDROQUINATE SYNTHASE [Helicobacter py... 23 5.0
ref|NP_223866.1| PERIPLASMIC CYTOCHROME C-553 [Helicobacter... 23 6.6
ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 23 6.6
ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter p... 22 8.6
ref|NP_223840.1| 50S RIBOSOMAL PROTEIN L10 [Helicobacter py... 22 8.6
ref|NP_222909.1| BETA-KETOACYL-ACP SYNTHASE III [Helicobact... 22 8.6
>ref|NP_223879.1| putative [Helicobacter pylori J99]
Length = 190
Score = 353 bits (907), Expect = 1e-99
Identities = 182/190 (95%), Positives = 185/190 (96%)
Query: 1 MELILGSQSSTRANLLKEHGIKFEQKALYFDEESLKTTDPREFVYLACKGKLEKAKELLA 60
MELILGSQSS RANLLKEHGIKFEQKALYFDEESLKTTDPREFVYLACKGKLEKAKELLA
Sbjct: 1 MELILGSQSSARANLLKEHGIKFEQKALYFDEESLKTTDPREFVYLACKGKLEKAKELLA 60
Query: 61 NNCAIVVADSVVSVGNRMQRKAKNKQEALEFLKRQNGHEIEVLTCSALISPVLEWLDLSV 120
NNCAIVVADSVVSVGNRMQRKAKNK+EALEFLKRQNG+EIEVLTCSALISPVLEWLDLSV
Sbjct: 61 NNCAIVVADSVVSVGNRMQRKAKNKREALEFLKRQNGNEIEVLTCSALISPVLEWLDLSV 120
Query: 121 FRARLKAFDPSEIEKYLESGLWQESAGCVRLEDFHKPYIKSSSENLSVGLGLNVEGLLGA 180
FRARLKAFD SEIEKYLESGLWQ SAGCVRLEDFHKPYIKSSS+NLSVGLGLNVEGLLGA
Sbjct: 121 FRARLKAFDCSEIEKYLESGLWQGSAGCVRLEDFHKPYIKSSSKNLSVGLGLNVEGLLGA 180
Query: 181 LKLGAKLSSL 190
LKLG KLS L
Sbjct: 181 LKLGVKLSLL 190
>ref|NP_224115.1| putative [Helicobacter pylori J99]
Length = 238
Score = 31.2 bits (69), Expect = 0.018
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 8/59 (13%)
Query: 122 RARLKAFDPSEIEKYLESGLWQESAGCVRLEDFHKPYIKSSSENLSVGLGLNVEGLLGA 180
R L+ + P Y L+ L DF +P+IK+S L +G G V GLL A
Sbjct: 3 RKLLRLYQPLNAYSYNSDSLF--------LYDFSRPFIKNSGAILDIGSGCGVLGLLCA 53
>ref|NP_222872.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 442
Score = 25.8 bits (55), Expect = 0.77
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 152 EDFHK---PYIKSSSENLSVGLGLNVEGLLGALK-LGAKLS 188
EDF K PY KSS+ + + G GL + + AL+ +G LS
Sbjct: 350 EDFEKYLQPYFKSSNPSQAHGFGLGMYIIKNALEAMGLNLS 390
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 25.4 bits (54), Expect = 1.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 119 SVFRARLKAFDPSEIEKYLESGLWQESAGCVRLEDFHK 156
SV+ +++ FD +Y S W+ AG V E+ H+
Sbjct: 346 SVYEVQIRTFDMHMGAEYGNSAHWKYKAGGVDHEEHHE 383
>ref|NP_223693.1| putative AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 440
Score = 25.0 bits (53), Expect = 1.3
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 23/141 (16%)
Query: 48 CKGKLEKAKELLANNCAIVVADSVVSVGNRMQRKAKNKQEALEFLKRQNGHEIEVLTCSA 107
C+ KL+++ L AN+C V+S G K QE L G I T
Sbjct: 80 CQEKLKRSLNLSANHC-------VLSAGYGASSAIKKFQEIL-------GVCIPSKTKKN 125
Query: 108 LISPVLEWLDLSVFRARLKAFDPSEIEKYLESGLWQ------ESAGCVRLEDFHKPYIKS 161
L P L+ D+++ R + ++ E GL + G + LE + K+
Sbjct: 126 L-EPYLK--DMALKRVIVGPYEHHSNEVSWREGLCEVVRIPLNEHGLLDLEILEQTLKKT 182
Query: 162 SSENLSVGLGLNVEGLLGALK 182
+ +SV NV G+L LK
Sbjct: 183 PNSLVSVSAASNVTGILTPLK 203
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 25.0 bits (53), Expect = 1.3
Identities = 18/68 (26%), Positives = 28/68 (40%), Gaps = 8/68 (11%)
Query: 26 KALYFDEESLKTTDPREFVYL--------ACKGKLEKAKELLANNCAIVVADSVVSVGNR 77
+ L D + T DP+EF YL + K K K A V+D + +G+
Sbjct: 227 RELIGDNDKNPTNDPKEFFYLQGIRPDGSSFKEKFALDKAYQNQESATKVSDLLDKIGHA 286
Query: 78 MQRKAKNK 85
++NK
Sbjct: 287 YGNTSQNK 294
>ref|NP_223106.1| putative proline peptidase [Helicobacter pylori J99]
Length = 357
Score = 24.6 bits (52), Expect = 1.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 86 QEALEFLKRQNGHEIEVLTCSALISPVLEWLDLSVFRARLKAFDPSEI 133
QEA E L+ + G +EV+ S L+ ++ + S + FDP+++
Sbjct: 47 QEAKESLQPKKGVLVEVIESSDLVQSAIDLITKSSVKKLF--FDPNQV 92
>ref|NP_223578.1| putative [Helicobacter pylori J99]
Length = 381
Score = 23.9 bits (50), Expect = 2.9
Identities = 26/93 (27%), Positives = 42/93 (44%), Gaps = 5/93 (5%)
Query: 86 QEALEFLKRQN----GHEIEVLTCSALISPVLEWLDLSVFRARLKAFDPSEIEKYLESGL 141
+E+LEF K++N + ++ L A +LE D+ K FD E+EK E L
Sbjct: 228 KESLEFFKQKNLSVHSNALKALKNQAHPFKILEG-DVMRHYPYGKFFDALELEKESERFL 286
Query: 142 WQESAGCVRLEDFHKPYIKSSSENLSVGLGLNV 174
+E+ L+ Y K+ S + G N+
Sbjct: 287 NKEAVPTGLLDGKKALYAKNLSLEIEKGFQHNL 319
>ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 439
Score = 23.9 bits (50), Expect = 2.9
Identities = 7/30 (23%), Positives = 21/30 (69%)
Query: 67 VADSVVSVGNRMQRKAKNKQEALEFLKRQN 96
+A+ ++++GN++ ++ + EA+E+ +N
Sbjct: 255 IANYLITIGNKVPKEVFSLDEAIEWFSLEN 284
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 23.5 bits (49), Expect = 3.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 152 EDFHKPYIKSSSENLSVGLGLNVEGLLGALKLGAK 186
E+F P +K + N GLN GL KLG K
Sbjct: 70 EEFFGPPVKIACNNQDKTQGLNALGLGFYQKLGLK 104
>ref|NP_222786.1| UREASE ACCESSORY PROTEIN [Helicobacter pylori J99]
Length = 256
Score = 23.5 bits (49), Expect = 3.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 79 QRKAKNKQEALEFLK 93
Q+K NK+ ALE+LK
Sbjct: 62 QKKVTNKESALEYLK 76
>ref|NP_224101.1| putative [Helicobacter pylori J99]
Length = 441
Score = 23.1 bits (48), Expect = 5.0
Identities = 15/41 (36%), Positives = 24/41 (57%), Gaps = 2/41 (4%)
Query: 150 RLEDFHKPYIKSSSENLSVGLGLNVEGLLGALKLGAKLSSL 190
RLE+ K I +S+ L++ + ++ L A +LG LSSL
Sbjct: 37 RLEELVK--IGNSNAKLALEMSQRLDTYLSATQLGITLSSL 75
>ref|NP_222989.1| 3-DEHYDROQUINATE SYNTHASE [Helicobacter pylori J99]
Length = 343
Score = 23.1 bits (48), Expect = 5.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 24 EQKALYFDEESLKTTDPREF 43
+ KA+Y D LKT + REF
Sbjct: 149 QPKAVYMDLAFLKTLEKREF 168
>ref|NP_223866.1| PERIPLASMIC CYTOCHROME C-553 [Helicobacter pylori J99]
Length = 96
Score = 22.7 bits (47), Expect = 6.6
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 19 HGIKFEQKAL 28
HG+KFE+KAL
Sbjct: 33 HGVKFEKKAL 42
>ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 390
Score = 22.7 bits (47), Expect = 6.6
Identities = 24/106 (22%), Positives = 42/106 (38%), Gaps = 12/106 (11%)
Query: 14 NLLKEHGIKFEQKALYFDEESLKTTDPREFVY---------LACKG--KLEKAKELLANN 62
N LK + + E+ +YF ++ ++PR L +G EK KEL N
Sbjct: 180 NFLKNYNLVDEKGEIYFAKDLSTPSNPRSVAIQEINLFLEPLKSRGWSSDEKLKELYYQN 239
Query: 63 CAIVVADSVVSVGNRMQRKAKNKQEALEFLKRQNGHEIEVLTCSAL 108
++ ++ ++ N L+F RQ ++E L L
Sbjct: 240 -RLIFKNNRPYEKYYLKESQDNCLSVLDFYSRQGTKDLEKLGLKGL 284
>ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter pylori J99]
Length = 459
Score = 22.3 bits (46), Expect = 8.6
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 62 NCAIVVADSVVSVGNRMQRKAKNKQEALEF 91
N A+ +++ + G + ++ KNK+E LE+
Sbjct: 253 NQAVGLSNLFIKEGVLVSQRGKNKEENLEY 282
>ref|NP_223840.1| 50S RIBOSOMAL PROTEIN L10 [Helicobacter pylori J99]
Length = 164
Score = 22.3 bits (46), Expect = 8.6
Identities = 19/71 (26%), Positives = 31/71 (42%), Gaps = 9/71 (12%)
Query: 17 KEHGIKFEQKALYFDEESLKTTDPREFVYLACKGKLEKAKELLANNCAIVVADS---VVS 73
KEH F KA FD+ES+ ++ KL +EL+ ++ A + V
Sbjct: 100 KEHKDHFVLKAGLFDKESVSV------AHVEAVSKLPSKEELMGMLLSVWTAPARYFVTG 153
Query: 74 VGNRMQRKAKN 84
+ N + K +N
Sbjct: 154 LDNLRKAKEEN 164
>ref|NP_222909.1| BETA-KETOACYL-ACP SYNTHASE III [Helicobacter pylori J99]
Length = 331
Score = 22.3 bits (46), Expect = 8.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 85 KQEALEFLKRQNGHEIEVLTCSALISPV 112
K+EALE R G+E+ L L+ V
Sbjct: 208 KEEALEPFLRMKGNEVFKLAVKTLLKDV 235
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.133 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,548
Number of Sequences: 1491
Number of extensions: 7763
Number of successful extensions: 37
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 18
length of query: 190
length of database: 494,079
effective HSP length: 73
effective length of query: 117
effective length of database: 385,236
effective search space: 45072612
effective search space used: 45072612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)