BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644755|ref|NP_206925.1| ribosomal protein L35
(rpl35) [Helicobacter pylori 26695]
(64 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222836.1| 50S RIBOSOMAL PROTEIN L35 [Helicobacter py... 132 1e-33
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 24 0.68
ref|NP_223560.1| putative [Helicobacter pylori J99] 22 2.6
ref|NP_224041.1| putative [Helicobacter pylori J99] 21 5.8
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 21 5.8
ref|NP_224149.1| putative [Helicobacter pylori J99] 20 7.5
ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylor... 20 7.5
ref|NP_223522.1| FLAGELLAR HOOK PROTEIN [Helicobacter pylor... 20 9.8
>ref|NP_222836.1| 50S RIBOSOMAL PROTEIN L35 [Helicobacter pylori J99]
Length = 64
Score = 132 bits (332), Expect = 1e-33
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MPKMKTNRGASKRFKVKKNLIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNAHSVMSL 60
MPKMKTNRGASKRFKVKKNLIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNAHSVMSL
Sbjct: 1 MPKMKTNRGASKRFKVKKNLIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNAHSVMSL 60
Query: 61 LCRA 64
LCRA
Sbjct: 61 LCRA 64
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 23.9 bits (50), Expect = 0.68
Identities = 13/42 (30%), Positives = 19/42 (44%), Gaps = 10/42 (23%)
Query: 28 KSHILTKKSPK----------RKANLNAPKHVHHTNAHSVMS 59
K H L ++PK +KA KH H +AHS ++
Sbjct: 131 KHHALKHQTPKPTPKPIKKEAKKAKEKTTKHAHSKHAHSPLN 172
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 21.9 bits (45), Expect = 2.6
Identities = 13/42 (30%), Positives = 19/42 (44%), Gaps = 9/42 (21%)
Query: 21 IKRGSAFKSHILTKKSPKRKANLNA---------PKHVHHTN 53
+K A +H LTK K ANL++ P++ H N
Sbjct: 221 LKTTQASINHTLTKNDAKNTANLSSVLQSLEKKEPQNKEHAN 262
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 20.8 bits (42), Expect = 5.8
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 23 RGSAFKSHILTKKSPKRKANLNAPKHVHHTNAH 55
R AF+ KK + A NA H T +H
Sbjct: 25 RAGAFERFTNRKKRFRENAQKNAESSNHETLSH 57
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter
pylori J99]
Length = 2399
Score = 20.8 bits (42), Expect = 5.8
Identities = 10/28 (35%), Positives = 13/28 (45%)
Query: 11 SKRFKVKKNLIKRGSAFKSHILTKKSPK 38
SK+F ++KR K H TK K
Sbjct: 24 SKKFFTLNQILKREKPLKRHKKTKSIEK 51
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 20.4 bits (41), Expect = 7.5
Identities = 8/36 (22%), Positives = 22/36 (60%), Gaps = 1/36 (2%)
Query: 27 FKSHILTKKSPKRKANLNAPKHV-HHTNAHSVMSLL 61
+++ + T++ PK++ N N K + + + S+ S++
Sbjct: 81 YQNWVATREEPKKQTNCNIIKALKENKSVESIASIV 116
>ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 576
Score = 20.4 bits (41), Expect = 7.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 33 TKKSPKRKANLNAPKH 48
T K P + A L +PKH
Sbjct: 10 TLKEPPKDAVLKSPKH 25
>ref|NP_223522.1| FLAGELLAR HOOK PROTEIN [Helicobacter pylori J99]
Length = 718
Score = 20.0 bits (40), Expect = 9.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 40 KANLNAPKHVHHTNA 54
+ANLNA +H T A
Sbjct: 187 RANLNAGRHADQTAA 201
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.126 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,186
Number of Sequences: 1491
Number of extensions: 2202
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 64
length of database: 494,079
effective HSP length: 40
effective length of query: 24
effective length of database: 434,439
effective search space: 10426536
effective search space used: 10426536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)