BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645856|ref|NP_208034.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(76 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223881.1| putative [Helicobacter pylori J99] 155 2e-40
ref|NP_223686.1| putative [Helicobacter pylori J99] 28 0.027
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 26 0.13
ref|NP_223692.1| putative [Helicobacter pylori J99] 25 0.38
ref|NP_223025.1| putative [Helicobacter pylori J99] 25 0.38
ref|NP_223338.1| putative LIPOPOLYSACCHARIDE BIOSYNTHESIS P... 24 0.50
ref|NP_223787.1| putative [Helicobacter pylori J99] 23 0.85
ref|NP_223644.1| putative [Helicobacter pylori J99] 23 0.85
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 23 0.85
ref|NP_222840.1| putative [Helicobacter pylori J99] 23 0.85
ref|NP_223788.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223415.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 23 1.5
ref|NP_222796.1| putative [Helicobacter pylori J99] 23 1.5
ref|NP_223515.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223176.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_224082.1| putative TYPE II RESTRICTION ENZYME [Helic... 22 3.2
ref|NP_223642.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223773.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_224054.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_223614.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 21 5.5
ref|NP_223158.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 21 5.5
ref|NP_223246.1| DIHYDROOROTASE [Helicobacter pylori J99] 20 7.2
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 20 7.2
ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (... 20 7.2
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 20 9.4
ref|NP_222780.1| putative [Helicobacter pylori J99] 20 9.4
>ref|NP_223881.1| putative [Helicobacter pylori J99]
Length = 76
Score = 155 bits (391), Expect = 2e-40
Identities = 75/76 (98%), Positives = 76/76 (99%)
Query: 1 MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEI 60
MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAE+SHMKKQKLKLKDEI
Sbjct: 1 MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEISHMKKQKLKLKDEI 60
Query: 61 HSMIIEYREKQKSERA 76
HSMIIEYREKQKSERA
Sbjct: 61 HSMIIEYREKQKSERA 76
>ref|NP_223686.1| putative [Helicobacter pylori J99]
Length = 623
Score = 28.5 bits (62), Expect = 0.027
Identities = 16/49 (32%), Positives = 26/49 (52%)
Query: 22 IFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYREK 70
IF + NQL+ I+T ++ AE+S QK L + S ++ R+K
Sbjct: 34 IFNQINQLNQVIETYKKNPERSAEISLYNTQKNDLIKSLTSKVLNERDK 82
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 26.2 bits (56), Expect = 0.13
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 14 ANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQ 52
+N DK+F+K +L DD + QQ + D E + ++
Sbjct: 81 SNGSLADKLFKKARKLVDDKRPFTQQKSLDEETQKLNEE 119
>ref|NP_223692.1| putative [Helicobacter pylori J99]
Length = 196
Score = 24.6 bits (52), Expect = 0.38
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 40 NASDAEVSHMKKQKLKLKDEIHSMIIEYREKQKS 73
+A D +S K + + LKD + SM Y E +K+
Sbjct: 125 SAKDETISAFKNENMFLKDALISMQEVYEEDKKT 158
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 24.6 bits (52), Expect = 0.38
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 40 NASDAEVSHMKKQKLKLKDEIHSMIIEYREKQKSERA 76
N + E + Q+ K+E+ M E +EKQK E A
Sbjct: 166 NEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVA 202
>ref|NP_223338.1| putative LIPOPOLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter
pylori J99]
Length = 315
Score = 24.3 bits (51), Expect = 0.50
Identities = 23/77 (29%), Positives = 31/77 (39%), Gaps = 15/77 (19%)
Query: 9 ISVLKANNPHFDKI-----------FEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLK 57
+SV + HFD I EK LD +E Q D EV + K+ L
Sbjct: 73 LSVCTPTHTHFDHIRFGLRNGMHVICEKPLVLDP----SEIQELKDLEVKYQKRVFSLLP 128
Query: 58 DEIHSMIIEYREKQKSE 74
+H + +EK KSE
Sbjct: 129 LRLHCDTLALKEKIKSE 145
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 23.5 bits (49), Expect = 0.85
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 2 FHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKK----QKLKLK 57
+ E D I +K + + +K E +LD+ IKT + + + + ++K+ + K+K
Sbjct: 307 YQESTDTIKKMKED--YTNKTDEALERLDEIIKTEQNNSQTKLDTENLKRIIETLRSKIK 364
Query: 58 DEIHSMIIEYREKQKS 73
MI + +E ++
Sbjct: 365 ANQQKMIDKSKEMSRN 380
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 23.5 bits (49), Expect = 0.85
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 23 FEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIE 66
F+ +N+L + E + + +KK + +L E+H +I+E
Sbjct: 236 FKLYNKLPFESINNENTKLNTNDNEEVKKLEFELAKEVHILILE 279
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 23.5 bits (49), Expect = 0.85
Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 6/52 (11%)
Query: 3 HEFRDEISVLKANNPHFDKIFEKH----NQLDDDIKTAEQQNASDAEVSHMK 50
++FRDE+ L N KI E NQ+ +K + QN S+ E+ +K
Sbjct: 620 YKFRDEL--LDINYDISAKIAENREYALNQIFSKLKAFDHQNLSEEELLGLK 669
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 23.5 bits (49), Expect = 0.85
Identities = 17/71 (23%), Positives = 31/71 (42%), Gaps = 2/71 (2%)
Query: 4 EFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSM 63
EF ++NP D + + + K E + +S E KK++L K++
Sbjct: 211 EFISSSKTQNSSNPDLDPMTNANTLKETASK--EPETSSKKEKKPKKKRRLSKKEKQQQA 268
Query: 64 IIEYREKQKSE 74
+ + EKQ S+
Sbjct: 269 LQQEFEKQISD 279
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 23.1 bits (48), Expect = 1.1
Identities = 11/48 (22%), Positives = 26/48 (53%), Gaps = 4/48 (8%)
Query: 28 QLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYREKQKSER 75
+LD+ K ++ + +AE+ +K++ +E S + EK+ +E+
Sbjct: 120 ELDEKSKQVQELHQKEAEIERLKRE----NNEAESRLKAENEKKLNEK 163
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 23.1 bits (48), Expect = 1.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 38 QQNASDAEVSHMKKQKLKLKDEIHSMIIEYREKQ 71
Q A DA +++M K DEI SMI+E E++
Sbjct: 143 QAKALDAMLNYMAYTK----DEIKSMILEQLEEE 172
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 22.7 bits (47), Expect = 1.5
Identities = 8/52 (15%), Positives = 28/52 (53%)
Query: 6 RDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLK 57
+ ++ ++ + +K+ + + ++ +A + + E+S +KKQ+ ++K
Sbjct: 155 KQKLQEIQKSREALNKLTQSNTNTTNNANSASNVSNAKKEISEVKKQEQEIK 206
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 22.7 bits (47), Expect = 1.5
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 20 DKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHS 62
DK+ NQLD+D+K +Q+ S + + + K ++ HS
Sbjct: 357 DKLDNNLNQLDNDLK--DQKGLSSEQQAQVDKALDSVQQLSHS 397
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 22.3 bits (46), Expect = 1.9
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 25 KHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYREKQKSERA 76
K+N+ + + E +A K++K +LK+E E R ++ +RA
Sbjct: 467 KNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRA 518
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 21.9 bits (45), Expect = 2.5
Identities = 20/72 (27%), Positives = 31/72 (42%), Gaps = 7/72 (9%)
Query: 8 EISVLKANNPHFDKIFEKHNQLDDDIKTA---EQQNASDAEVSHMKKQKLKLKDEIHSMI 64
EI+ AN P E + L D T+ E +A K++K +LK+E
Sbjct: 360 EINQESANEPSS----ENNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKAK 415
Query: 65 IEYREKQKSERA 76
E R ++ +RA
Sbjct: 416 AEQRAREFEQRA 427
>ref|NP_224082.1| putative TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 406
Score = 21.6 bits (44), Expect = 3.2
Identities = 14/44 (31%), Positives = 21/44 (46%)
Query: 21 KIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMI 64
K+FE H D A ++ + V+H + LK K EI+ I
Sbjct: 63 KVFESHTITIDMFGCAFYRSFAYKMVTHARVFSLKPKFEINHKI 106
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 21.6 bits (44), Expect = 3.2
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 4 EFRDEISVL--KANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKL 54
EF E+S L K + + LD+D ++E +A + + +++KQK+
Sbjct: 60 EFMQELSSLSFKEQLEFYQTNRDYDPSLDNDENSSELLDAFTSSLENLEKQKI 112
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 21.2 bits (43), Expect = 4.2
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 19 FDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMI 64
F + + + D + + EQ+N + + ++Q+LK E M+
Sbjct: 94 FSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRLKQNQENQEML 139
>ref|NP_224054.1| putative [Helicobacter pylori J99]
Length = 274
Score = 20.8 bits (42), Expect = 5.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 22 IFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEI 60
+FE + +++ +K ++ A +S M K KLKD I
Sbjct: 4 VFEVYPKVNVFLKILHKEGAYHKIISRMCLVKNKLKDII 42
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 20.8 bits (42), Expect = 5.5
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 20 DKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLK 55
DK+F++ + + A+ ++ D E ++ + +K+K
Sbjct: 15 DKVFDRVSAFTWEKYKAKNEDEEDDEANYREFEKIK 50
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 20.8 bits (42), Expect = 5.5
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 15 NNPHFDKIFEKHNQLDDDIKTAEQ 38
N+P F +N++ D IKT Q
Sbjct: 142 NSPCFQGNLALYNEMVDSIKTLSQ 165
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 20.8 bits (42), Expect = 5.5
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 12 LKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLK 55
+KA ++K ++ ++D+ T EQQ + + ++K
Sbjct: 28 IKAKATKYEKALQELQKIDESKLTKEQQQVLKVFKGELDQTEIK 71
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 20.8 bits (42), Expect = 5.5
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 38 QQNASDAEVSHMKKQKLKLKDEIHSMIIEYREKQ 71
Q N D E S KK+ +K D ++++ +E +KQ
Sbjct: 184 QINILDFEYS--KKEIVKRLDALYALALEEEKKQ 215
>ref|NP_223246.1| DIHYDROOROTASE [Helicobacter pylori J99]
Length = 339
Score = 20.4 bits (41), Expect = 7.2
Identities = 7/15 (46%), Positives = 11/15 (72%)
Query: 17 PHFDKIFEKHNQLDD 31
P ++FEKHN L++
Sbjct: 265 PALCELFEKHNALEN 279
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 20.4 bits (41), Expect = 7.2
Identities = 10/36 (27%), Positives = 17/36 (46%)
Query: 24 EKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDE 59
+K+ +IK + SD+E+ M K K+E
Sbjct: 484 DKNTGKSQEIKISGSSGLSDSEIEKMVKDAELHKEE 519
>ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 20.4 bits (41), Expect = 7.2
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 5 FRDEISVLKANNPHFDKI 22
FR+EI+ +K N +F +I
Sbjct: 117 FRNEITRIKCNPKNFKRI 134
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 20.0 bits (40), Expect = 9.4
Identities = 12/53 (22%), Positives = 23/53 (42%)
Query: 20 DKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYREKQK 72
+K+ EK L IK + + H+K + LK+ H ++E ++
Sbjct: 282 EKVLEKLGMLSGIIKDYGSIAHAKERLGHVKNELHNLKEIDHHCETYHKEIER 334
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 20.0 bits (40), Expect = 9.4
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 5 FRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKL 54
+ +E+S + FD +F L+D KTA +A A + +K L
Sbjct: 392 YPEEVSFNEWRWAEFDSVFSAIVPLEDLNKTACAHHALKALQATLKDNDL 441
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.128 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,826
Number of Sequences: 1491
Number of extensions: 3054
Number of successful extensions: 29
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of query: 76
length of database: 494,079
effective HSP length: 52
effective length of query: 24
effective length of database: 416,547
effective search space: 9997128
effective search space used: 9997128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 40 (20.0 bits)