BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645858|ref|NP_208036.1| ribosomal protein S18
(rps18) [Helicobacter pylori 26695]
(85 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223883.1| 30S RIBOSOMAL PROTEIN S18 [Helicobacter py... 176 8e-47
ref|NP_222945.1| GLUTAMYL TRNA REDUCTASE [Helicobacter pylo... 23 1.1
ref|NP_224041.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223310.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_223529.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [... 22 3.1
ref|NP_222977.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 21 4.1
ref|NP_223197.1| cag island protein [Helicobacter pylori J99] 21 4.1
ref|NP_223469.1| putative CHEMOTAXIS PROTEIN (MOTILITY PROT... 21 5.3
ref|NP_222807.1| putative ALPHA(1,2)FUCOSYLTRANSFERASE [Hel... 21 5.3
ref|NP_222756.1| DNA transformation competancy [Helicobacte... 20 7.0
ref|NP_224003.1| putative [Helicobacter pylori J99] 20 9.1
ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Hel... 20 9.1
ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99] 20 9.1
ref|NP_222843.1| PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLAS... 20 9.1
>ref|NP_223883.1| 30S RIBOSOMAL PROTEIN S18 [Helicobacter pylori J99]
Length = 85
Score = 176 bits (446), Expect = 8e-47
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MERKRYSKRYCKYTEAKISFIDYKDLDMLKHTLSERYKIMPRRLTGNSKKWQERVEVAIK 60
MERKRYSKRYCKYTEAKISFIDYKDLDMLKHTLSERYKIMPRRLTGNSKKWQERVEVAIK
Sbjct: 1 MERKRYSKRYCKYTEAKISFIDYKDLDMLKHTLSERYKIMPRRLTGNSKKWQERVEVAIK 60
Query: 61 RARHMALIPYIVDRKKVVDSPFKQH 85
RARHMALIPYIVDRKKVVDSPFKQH
Sbjct: 61 RARHMALIPYIVDRKKVVDSPFKQH 85
>ref|NP_222945.1| GLUTAMYL TRNA REDUCTASE [Helicobacter pylori J99]
Length = 449
Score = 23.1 bits (48), Expect = 1.1
Identities = 19/55 (34%), Positives = 26/55 (46%), Gaps = 1/55 (1%)
Query: 24 KDLDMLKHTLSERYKIMPRRLTGNSKKWQERVEVAIKRARHMALIPYIVDRKKVV 78
KDL L H + + R LTG SK+ VA+K A + I D+K +V
Sbjct: 148 KDLTRLLH-FAFKCAAKVRNLTGISKQGVSISSVAVKEALSIFEKERIKDKKALV 201
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 22.3 bits (46), Expect = 1.8
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 15 EAKISFIDYKDLDMLKHTLSERYKIMPR 42
EAK+++ ++ ++ + H E K+M R
Sbjct: 489 EAKVAYQEFDNIHVSGHAAQEEQKLMLR 516
>ref|NP_223310.1| putative [Helicobacter pylori J99]
Length = 135
Score = 21.9 bits (45), Expect = 2.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 26 LDMLKHTLSERYKIMPR 42
L+ LK+ +ER+KI P+
Sbjct: 62 LEKLKNRFNERFKICPK 78
>ref|NP_223529.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Helicobacter pylori J99]
Length = 157
Score = 21.6 bits (44), Expect = 3.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 42 RRLTGNSKKWQERVEVAIKR 61
+ LTGN K +E+V +KR
Sbjct: 108 KALTGNGKAAKEQVAFMVKR 127
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 21.6 bits (44), Expect = 3.1
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 7 SKRYCKYTEAKISFIDYK-----DLDMLKHTLSERYKIMPRRLTGNSKKWQERVEVAIKR 61
+++YC Y E+K D+K D+D L S Y + L + + + ++R
Sbjct: 111 NQKYCVYVESKDFLKDFKRFKIQDVDFLFSPFSLIYDFVRDNLEN-----KPLLYLLLER 165
Query: 62 ARHMALIPYIVDRKKV 77
+R L I D+K++
Sbjct: 166 SRFYFL---IADKKEI 178
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 21.2 bits (43), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 44 LTGNSKKWQERVEVAIKRARHMALIP 69
LT +K +E E A+K ++ ALIP
Sbjct: 61 LTFTNKASKEMQERALKLLKNQALIP 86
>ref|NP_223197.1| cag island protein [Helicobacter pylori J99]
Length = 252
Score = 21.2 bits (43), Expect = 4.1
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 49 KKWQERVEVAIKRARHMALIPYIVDRKKVVDSP 81
+ + E + + + R A+I + R+KV +SP
Sbjct: 134 RMFNENIRQFVDKVRAEAIISSNIQREKVKNSP 166
>ref|NP_223469.1| putative CHEMOTAXIS PROTEIN (MOTILITY PROTEIN A) [Helicobacter
pylori J99]
Length = 257
Score = 20.8 bits (42), Expect = 5.3
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 21 IDYKDLDMLKHTLSERYKIMPRRLTGNSKKWQERVEVA 58
ID KDL +K +L + M G + W+ E A
Sbjct: 116 IDGKDLKSVKESLEISIEEMEEYYHGAAHYWETAGETA 153
>ref|NP_222807.1| putative ALPHA(1,2)FUCOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 299
Score = 20.8 bits (42), Expect = 5.3
Identities = 9/34 (26%), Positives = 17/34 (49%)
Query: 20 FIDYKDLDMLKHTLSERYKIMPRRLTGNSKKWQE 53
F D + D + + + + + P GN+KK +E
Sbjct: 113 FQDPRYFDAISSLIKQTFTLPPPPENGNNKKKEE 146
>ref|NP_222756.1| DNA transformation competancy [Helicobacter pylori J99]
Length = 247
Score = 20.4 bits (41), Expect = 7.0
Identities = 10/28 (35%), Positives = 15/28 (52%)
Query: 12 KYTEAKISFIDYKDLDMLKHTLSERYKI 39
K+ E+K+S DLDM ER ++
Sbjct: 23 KHLESKLSGFSVNDLDMQSVFRLERNRL 50
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 20.0 bits (40), Expect = 9.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 17 KISFIDYKDLDMLKHTLSERYKIMPRRL 44
K+S ++KDL H +SE++ I+ +
Sbjct: 655 KMSEKNFKDLKEHFHLMSEKHFILKHEI 682
>ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 424
Score = 20.0 bits (40), Expect = 9.1
Identities = 7/18 (38%), Positives = 14/18 (76%)
Query: 51 WQERVEVAIKRARHMALI 68
++ VE+A+K+ H+A+I
Sbjct: 55 YEHIVELALKKQIHLAII 72
>ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99]
Length = 714
Score = 20.0 bits (40), Expect = 9.1
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 15 EAKISFIDYKDLDMLKHTLSERYK 38
E + I+Y++LD++K +S ++
Sbjct: 599 EQDMPTIEYEELDVMKMEISPDFR 622
>ref|NP_222843.1| PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE [Helicobacter pylori
J99]
Length = 449
Score = 20.0 bits (40), Expect = 9.1
Identities = 11/37 (29%), Positives = 15/37 (39%)
Query: 23 YKDLDMLKHTLSERYKIMPRRLTGNSKKWQERVEVAI 59
YKD L+ E P G ++ QER+ I
Sbjct: 22 YKDEQELERVKKELRSYPPLVFAGEARNLQERLAQVI 58
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,482
Number of Sequences: 1491
Number of extensions: 2850
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 85
length of database: 494,079
effective HSP length: 61
effective length of query: 24
effective length of database: 403,128
effective search space: 9675072
effective search space used: 9675072
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 40 (20.0 bits)