BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645864|ref|NP_208042.1| hypothetical protein
[Helicobacter pylori 26695]
(192 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223889.1| putative [Helicobacter pylori J99] 321 9e-90
ref|NP_223773.1| putative [Helicobacter pylori J99] 40 5e-05
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 37 3e-04
ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 36 8e-04
ref|NP_223560.1| putative [Helicobacter pylori J99] 35 0.001
ref|NP_223645.1| putative [Helicobacter pylori J99] 34 0.002
ref|NP_223830.1| putative [Helicobacter pylori J99] 33 0.006
ref|NP_223025.1| putative [Helicobacter pylori J99] 32 0.008
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 30 0.042
ref|NP_224134.1| putative [Helicobacter pylori J99] 30 0.055
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 29 0.093
ref|NP_223986.1| putative [Helicobacter pylori J99] 28 0.12
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 28 0.12
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 28 0.16
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 28 0.16
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 28 0.16
ref|NP_222894.1| putative [Helicobacter pylori J99] 28 0.16
ref|NP_222831.1| putative [Helicobacter pylori J99] 28 0.21
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 27 0.35
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 27 0.35
ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori... 27 0.35
ref|NP_223176.1| putative [Helicobacter pylori J99] 27 0.35
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 27 0.35
ref|NP_222985.1| LIPOPOLYSACCHARIDE HEPTOSYLTRANSFERASE-1 [... 27 0.46
ref|NP_222919.1| SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE [He... 27 0.46
ref|NP_223770.1| putative [Helicobacter pylori J99] 26 0.79
ref|NP_223515.1| putative [Helicobacter pylori J99] 25 1.8
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 25 1.8
ref|NP_223990.1| putative [Helicobacter pylori J99] 24 3.0
ref|NP_223812.1| putative [Helicobacter pylori J99] 24 3.0
ref|NP_223610.1| putative [Helicobacter pylori J99] 24 3.0
ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRAN... 24 3.0
ref|NP_223790.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223884.1| SINGLE-STRAND BINDING PROTEIN [Helicobacte... 23 5.1
ref|NP_223739.1| putative Outer membrane protein [Helicobac... 23 5.1
ref|NP_223311.1| UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYLTRANSFE... 23 6.7
ref|NP_223160.1| PUTATIVE POTASSIUM CHANNEL PROTEIN [Helico... 23 6.7
ref|NP_223118.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 23 6.7
ref|NP_223113.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 23 6.7
ref|NP_222962.1| putative [Helicobacter pylori J99] 23 6.7
ref|NP_223294.1| Hydrogenase, cytochrome subunit [Helicobac... 22 8.7
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 321 bits (822), Expect = 9e-90
Identities = 170/220 (77%), Positives = 180/220 (81%), Gaps = 29/220 (13%)
Query: 1 MKTEMKSSLKLFMRPLLVVLAFMLLYALVHAALGFYVKKDSAPISPNVEKTETERQNGVL 60
MKTEMKS LKLF +PLLVVLAFMLLYAL HA LGFYVKKDSAP+SPNVEK+ETERQN
Sbjct: 1 MKTEMKSFLKLFAQPLLVVLAFMLLYALAHAVLGFYVKKDSAPMSPNVEKSETERQNSTF 60
Query: 61 SPKQEEANATTTATEESPTKDTAPPLDTAAQKQE-------------------------- 94
SPK EEANATTTATE++PTKDT PPLDTA QKQE
Sbjct: 61 SPK-EEANATTTATEQNPTKDTVPPLDTATQKQEIKQEIKQEIKQEIKQEIKQEIKQEIK 119
Query: 95 --TKQEQEKENEPKQDSVPPVQNNQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKIL 152
TKQEQEKEN+PKQ+SV PVQN+QKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKI+
Sbjct: 120 QETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKII 179
Query: 153 GLLLKNKSVKVLEIQNDWAEIEFSHETKGYVFLKLLKKAE 192
G L+KNKSVKVLEIQNDWAEIEFSHETKGYVFLKLLKKAE
Sbjct: 180 GSLIKNKSVKVLEIQNDWAEIEFSHETKGYVFLKLLKKAE 219
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 39.7 bits (91), Expect = 5e-05
Identities = 42/147 (28%), Positives = 61/147 (40%), Gaps = 27/147 (18%)
Query: 38 KKDSAPISPNVE------KTE-----TERQNGVLSPKQEEANATTTATEE--SPTKDTAP 84
KKD I N+E K E TE+Q L PK+E + E+ S D
Sbjct: 43 KKDEQAIDLNLEDLPSEKKNEKIEKVTEKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQE 102
Query: 85 PLDTAAQKQETKQEQE-----------KENEPKQDSVPPVQN--NQKTPTTPLMGKKPLE 131
D AQK E K EQE K+N+ Q+ + +Q NQ T + K L+
Sbjct: 103 KTDKNAQKDEQKNEQEEQRRLREQQRLKQNQENQEMLKGLQQNLNQFTQKLESVKNKTLD 162
Query: 132 YKV-AVSGVNVRAFPSTKGKILGLLLK 157
++ GV+ +A+ +I +L K
Sbjct: 163 LQIPKQDGVDEKAYQEWYAQIYQILYK 189
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 37.4 bits (85), Expect = 3e-04
Identities = 24/110 (21%), Positives = 50/110 (44%), Gaps = 11/110 (10%)
Query: 20 LAFMLLYALVHAALGFYVKKDSAPISPNVEKTETERQNGVLSPKQEEANATTTATEESPT 79
++F++ +AL G+++ ++ AP + + T + L+ +N T A P
Sbjct: 17 VSFLISFALYAIGFGYFLLREDAP--EPLAQAGTTKVTMSLASINTNSNTKTNAESAKPK 74
Query: 80 KDTAPPLDTAAQKQETKQEQEKENEPKQDSVPPVQNNQKTPTTPLMGKKP 129
++ K++ K+E+ K+ EPK+++ P + K P KP
Sbjct: 75 EEP---------KEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKP 115
Score = 22.3 bits (46), Expect = 8.7
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 39 KDSAPISPNVEKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQ--KQETK 96
K+ P E+ + E PK + + P + P + + K+E
Sbjct: 74 KEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPEPKVEEPKKEEP 133
Query: 97 QEQEKENEPKQDS 109
+E+ K+ E K+++
Sbjct: 134 KEEPKKEEAKEEA 146
>ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 198
Score = 35.8 bits (81), Expect = 8e-04
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 19/135 (14%)
Query: 12 FMRPLLVVLAFMLLYALVHAALGFYVKKDSAPISPNVEKTETERQ-----NGVLSPKQEE 66
FM L + L LL+ + ALG++ K+ + KT E G L+P
Sbjct: 49 FMAKLTMFLG--LLFVINTIALGYFYNKEYGKSVLDETKTNKELSPLVPATGTLNPTLNP 106
Query: 67 A-NATTTATEESPTKDTAP----------PLDTAAQKQETKQEQEKENEPKQDSVPPVQN 115
N T E++PT P P T + + E+ ++N+ K++ + V+
Sbjct: 107 TLNPTLNPLEQAPTNPLMPTQTPKELPKEPAKTPFVESPKQNEKNEKNDAKENGIKGVEK 166
Query: 116 NQKT-PTTPLMGKKP 129
N++ T P +KP
Sbjct: 167 NKENAKTPPTTHQKP 181
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 35.0 bits (79), Expect = 0.001
Identities = 39/161 (24%), Positives = 63/161 (38%), Gaps = 29/161 (18%)
Query: 37 VKKDSAPISPNVEKTETERQNGVLSPKQEEANATTTATE----------ESPTKDTAP-P 85
+K+D EKT + ++P NA + P D AP P
Sbjct: 282 IKRDKTLSKKKPEKTPIHAKTQTIAPSATPENAPKIPLKTLPLMPLIGANPPPNDNAPTP 341
Query: 86 LDTAAQKQETKQEQEKENEPKQDSVPPVQNNQKT-------PTTP---------LMGKKP 129
L+ + +E +EK E S VQN Q + TTP + ++
Sbjct: 342 LEKEEKTKEISDNKEKAKETNS-SAQSVQNTQASDKTSDNKSTTPKETIRHFTQQLKQEI 400
Query: 130 LEYKVAVSGVNVRAFPSTKGKILGLLLK-NKSVKVLEIQND 169
EYK +S +++ FP GK+ + K K++KV I ++
Sbjct: 401 QEYKPPMSKISMDLFPKELGKVEVTIQKVGKNLKVSVISHN 441
Score = 24.3 bits (51), Expect = 2.3
Identities = 22/120 (18%), Positives = 47/120 (38%), Gaps = 4/120 (3%)
Query: 40 DSAPISPNVEKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQ 99
D+AP +EK E ++ K +E N++ + + + D + K+ +
Sbjct: 336 DNAPTP--LEKEEKTKEISDNKEKAKETNSSAQSVQNTQASDKTSDNKSTTPKETIRHFT 393
Query: 100 EKENEPKQDSVPPVQNNQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKILGLLLKNK 159
++ + Q+ PP+ +GK +E + G N++ + L L N+
Sbjct: 394 QQLKQEIQEYKPPMSKISMDLFPKELGK--VEVTIQKVGKNLKVSVISHNNSLQTFLDNQ 451
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 34.3 bits (77), Expect = 0.002
Identities = 28/111 (25%), Positives = 50/111 (44%), Gaps = 11/111 (9%)
Query: 40 DSAPISPNVEKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQK---QETK 96
+S ++P E T+ N V +E A T+E T++ T ++ ++T
Sbjct: 338 NSVGLNPTQESKITD--NSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTT 395
Query: 97 QEQEKENEPKQDSVPPVQNNQKTPTTPLMGKKP-LEYK----VAVSGVNVR 142
QEQ + + Q++ P Q+TP TP + P +++K V + G R
Sbjct: 396 QEQTTQEQDTQENAPTTIK-QETPITPAIPLNPKIDFKPSEEVLIKGAKTR 445
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 32.7 bits (73), Expect = 0.006
Identities = 22/80 (27%), Positives = 33/80 (40%), Gaps = 5/80 (6%)
Query: 38 KKDSAPISPNVEKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQ 97
KK+ A E + +QEE TE+ K T +KQ+T+Q
Sbjct: 100 KKEVAQAQKEAENARDRANKSGIELEQEEQK-----TEQEKQKTEQEKQKTEQEKQKTEQ 154
Query: 98 EQEKENEPKQDSVPPVQNNQ 117
E++K + KQ + NNQ
Sbjct: 155 EKQKTEQEKQKTSNIETNNQ 174
Score = 32.3 bits (72), Expect = 0.008
Identities = 20/87 (22%), Positives = 38/87 (42%), Gaps = 9/87 (10%)
Query: 39 KDSAPISPNVEKTETERQNGVLSPKQEEANATTTATEESPTK---------DTAPPLDTA 89
K + +KTE E+Q ++ E T E+ T+ +T +
Sbjct: 119 KSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVE 178
Query: 90 AQKQETKQEQEKENEPKQDSVPPVQNN 116
++Q+T+QE++K N ++D V + N
Sbjct: 179 QEQQKTEQEKQKTNNTQKDLVNKAEQN 205
Score = 29.6 bits (65), Expect = 0.055
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 8/72 (11%)
Query: 48 VEKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQ 107
V + + E +N ++ AN + E+ K T +KQ+T+QE++K + KQ
Sbjct: 103 VAQAQKEAENA-----RDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQ 157
Query: 108 DSVPPVQNNQKT 119
+ Q QKT
Sbjct: 158 KT---EQEKQKT 166
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 32.3 bits (72), Expect = 0.008
Identities = 23/96 (23%), Positives = 39/96 (39%), Gaps = 12/96 (12%)
Query: 48 VEKTETERQNGVLSPKQEEANATTTATEESPTKDTA-----PPLDTAAQKQ-------ET 95
V+K E + + KQ++ A EE P D PP D K+ ET
Sbjct: 181 VKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELET 240
Query: 96 KQEQEKENEPKQDSVPPVQNNQKTPTTPLMGKKPLE 131
+E+ +E EP ++ ++ ++ T + LE
Sbjct: 241 PKEETQEQEPIKEETQEIKEEKQEKTQDSPSAQELE 276
Score = 28.5 bits (62), Expect = 0.12
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 50 KTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQK-QETKQEQEKENEPKQD 108
K ET+ Q + QE T++SP+ + ++ QE +QE + E ++
Sbjct: 242 KEETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQE- 300
Query: 109 SVPPVQNNQKTP 120
Q N +TP
Sbjct: 301 ----TQENTETP 308
Score = 25.4 bits (54), Expect = 1.0
Identities = 16/65 (24%), Positives = 27/65 (40%), Gaps = 7/65 (10%)
Query: 52 ETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQDSVP 111
E E Q + +PK+E E+ P K+ + Q++ +E E Q+ V
Sbjct: 231 ELETQEELETPKEE-------TQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVK 283
Query: 112 PVQNN 116
+Q N
Sbjct: 284 EIQEN 288
Score = 24.3 bits (51), Expect = 2.3
Identities = 19/87 (21%), Positives = 36/87 (40%), Gaps = 8/87 (9%)
Query: 43 PISPNVEKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKE 102
P +++T+ E +P++ EA E+P ++ Q +ET QE+ +E
Sbjct: 345 PQEKEIQETQDE------TPQELEAQDEKLQENETPKDESMQESAQNLQDKETPQEETQE 398
Query: 103 N--EPKQDSVPPVQNNQKTPTTPLMGK 127
+ E +D PV P + +
Sbjct: 399 DHYESIEDIPEPVMAKAMGEELPFLNE 425
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 30.0 bits (66), Expect = 0.042
Identities = 30/146 (20%), Positives = 60/146 (40%), Gaps = 32/146 (21%)
Query: 4 EMKSSLKLFMRP------------LLVVLAFMLLYALVHAALGFYVKKDSAPISPNVEKT 51
E+ +S +LF+ P L+VV+++++L+ L ++ + + + + K
Sbjct: 101 EIGNSARLFLHPFIGDFGLYVLIMLMVVISYLILFKLPPKSVFYPYMNKTQSLLKEIYKQ 160
Query: 52 ETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQDSVP 111
+ + S K+E E +P+ +QK+ET ++EKEN +
Sbjct: 161 CLQAFSPNFSLKKE-------GFENTPSD---------SQKKETNNDKEKENLKEN---- 200
Query: 112 PVQNNQKTPTTPLMGKKPLEYKVAVS 137
P+ N TP P Y ++
Sbjct: 201 PIDENHNTPNEESFLAIPTPYNTTLN 226
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 29.6 bits (65), Expect = 0.055
Identities = 23/97 (23%), Positives = 38/97 (38%), Gaps = 10/97 (10%)
Query: 56 QNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETK----QEQEKENEPKQDSVP 111
+N +L P + + T ++PT D PPL ++Q QE EK S
Sbjct: 153 KNSLLQPLVTPSKVSPTNEVKTPTNDANPPLKHSSQDQENNLFVAPPTEKTLPNNTSSAD 212
Query: 112 PVQNNQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTK 148
+NN+ + K+ A+ N++ F K
Sbjct: 213 ASENNESNENRDNVEKQ------AIRDPNIKEFACGK 243
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 28.9 bits (63), Expect = 0.093
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 50 KTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQDS 109
K + + +PKQ+ + TA T PL A K K+E + + +PK+
Sbjct: 58 KEQIQANQPTKNPKQDNKDDLNTAA-------TPKPLAKKASKTPKKEETKAQPKPKK-- 108
Query: 110 VPPVQNNQKTPTTPLMGKKPLE 131
+ +K P++ KK +E
Sbjct: 109 ---TKEKKKEAPAPIIKKKEIE 127
Score = 27.3 bits (59), Expect = 0.27
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 38 KKDSAPISPNVEKTETERQNGVLSP--KQEEANATTTATEESPTKDTAPPLDTAAQKQET 95
KK+ P +KT+ E++ +P K++E T ++P + P + +Q ++
Sbjct: 96 KKEETKAQPKPKKTK-EKKKEAPAPIIKKKEIEIVNTFENQTPLVENTPKAVSHSQIEKA 154
Query: 96 KQEQEKENEPKQDSVPPVQNNQKT 119
KQ+ ++ + ++ Q+N T
Sbjct: 155 KQKLQEIQKSREALNKLTQSNTNT 178
Score = 26.6 bits (57), Expect = 0.46
Identities = 16/58 (27%), Positives = 24/58 (40%), Gaps = 8/58 (13%)
Query: 70 TTTATEESPTKDTAPPLDTAA--------QKQETKQEQEKENEPKQDSVPPVQNNQKT 119
T TE S T+ P AA +++ KQE +K +P + P N K+
Sbjct: 226 TENETENSVTESKKPTQSAAAIFEDIKKEWQEKDKQETKKTKKPSKPKATPTAKNNKS 283
>ref|NP_223986.1| putative [Helicobacter pylori J99]
Length = 387
Score = 28.5 bits (62), Expect = 0.12
Identities = 14/43 (32%), Positives = 22/43 (50%)
Query: 141 VRAFPSTKGKILGLLLKNKSVKVLEIQNDWAEIEFSHETKGYV 183
+R P+ ILGL +K+L +D+ +I HE G+V
Sbjct: 339 IRILPTQNSTILGLSRDEMPIKILGSHDDYYKILTPHEQIGWV 381
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 28.5 bits (62), Expect = 0.12
Identities = 15/61 (24%), Positives = 35/61 (56%), Gaps = 1/61 (1%)
Query: 54 ERQNGVLSPKQEEANATTTATEESPTKDT-APPLDTAAQKQETKQEQEKENEPKQDSVPP 112
++ N +PK+ + A T AT+E+ K++ + A++ + K+ + KE++ K+ + P
Sbjct: 3 KKANEEKAPKRAKQEAKTEATQENKAKESNKENKNNKAKEGKIKEAKTKESKVKETAKEP 62
Query: 113 V 113
+
Sbjct: 63 I 63
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 28.1 bits (61), Expect = 0.16
Identities = 17/57 (29%), Positives = 26/57 (44%), Gaps = 1/57 (1%)
Query: 49 EKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEP 105
E+ ++Q PKQE A A T E+P +T + A K + K + E+ P
Sbjct: 213 ERRAQKKQEDQAKPKQEVAPAKETPKTETPKTETR-KVPKAETKAKAKADTEENKAP 268
Score = 26.2 bits (56), Expect = 0.60
Identities = 31/121 (25%), Positives = 49/121 (39%), Gaps = 38/121 (31%)
Query: 37 VKKDSAPISPNVE------------KTETERQNGVLSPKQEEANATTTA---TEESPTKD 81
VKK A S N+E + E +++N + ++ +AN T T T ++P D
Sbjct: 123 VKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANKTPTTENLTSDNPLAD 182
Query: 82 TAPPLDTAAQKQE---------------------TKQEQEKENEPKQDSVPPVQNNQKTP 120
P LD A E +++QE + +PKQ+ V P + KT
Sbjct: 183 E-PDLDYANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAKPKQE-VAPAKETPKTE 240
Query: 121 T 121
T
Sbjct: 241 T 241
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 28.1 bits (61), Expect = 0.16
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 29 VHAALGFYVKKDSAPISPNVEKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDT 88
+ AL +++ SAP K E + L PK TT T E K+T +
Sbjct: 473 IKIALKHHLENKSAP---EETKEVKEFKFPPLKPK-----LTTETTAEMQEKETKEAVGK 524
Query: 89 AAQKQETKQEQEKENEPKQ 107
A Q +E ++ +ENE K+
Sbjct: 525 ALQTKENDTKEVQENETKE 543
Score = 22.7 bits (47), Expect = 6.7
Identities = 11/38 (28%), Positives = 19/38 (49%)
Query: 91 QKQETKQEQEKENEPKQDSVPPVQNNQKTPTTPLMGKK 128
Q++ETK+ K + K++ VQ N+ T K+
Sbjct: 514 QEKETKEAVGKALQTKENDTKEVQENETKETKEAQPKE 551
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 28.1 bits (61), Expect = 0.16
Identities = 33/155 (21%), Positives = 52/155 (33%), Gaps = 19/155 (12%)
Query: 7 SSLKLFMRPLLVVLAFMLLYALVHAALGFYVKKDSAPISPNVEKTETER----------- 55
S+ F +L VL L+Y L F ++D P P + K E
Sbjct: 22 SNRNFFFSLILSVLLHWLIYFL------FEHREDFFPSKPKLVKLNPENLLVLKRGHSQD 75
Query: 56 --QNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQDSVPPV 113
+N +PK A T +P PP K E K + + E + +
Sbjct: 76 PSKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKAL 135
Query: 114 QNNQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTK 148
+ +K ++ +K E KV V + K
Sbjct: 136 KKVEKVEEKKVVEEKKEEKKVVEQKVEQKKIEEKK 170
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 28.1 bits (61), Expect = 0.16
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 8/153 (5%)
Query: 47 NVEKTETERQNGVLSPKQEEANATTTATEESPTK-DTAPPLDTAAQKQETKQEQEKENEP 105
N++K E+E + + + + TT +ES + P+ + QK E++ +KE
Sbjct: 96 NIKKQESENSMPIQTDQAQMEMKTTEEKQESQKELKAVEPIPMSTQK-ESQAVAKKETPH 154
Query: 106 KQDSVPPVQNNQKTPTTPLMGKKPLEYKVAVSGVNVRAFPS---TKGKIL--GLLLKNKS 160
K+ V P K+P K A V+ +A TKG L G+ +
Sbjct: 155 KKPKVAPKDKEAHKDKAKHAAKEPKVKKEARKEVSKKANSKTNLTKGHYLQVGVFAHTPN 214
Query: 161 VKVLEIQNDWA-EIEFSHETKGYVFLKLLKKAE 192
L+ N + +IE TK Y+ K E
Sbjct: 215 KAFLQEFNQFPHKIEDRGATKRYLIGPYKSKQE 247
Score = 25.8 bits (55), Expect = 0.79
Identities = 14/54 (25%), Positives = 25/54 (45%), Gaps = 1/54 (1%)
Query: 61 SPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQ-DSVPPV 113
SPKQE+ + + + P+ T + E K +EK+ K+ +V P+
Sbjct: 83 SPKQEDKLDKVVDNIKKQESENSMPIQTDQAQMEMKTTEEKQESQKELKAVEPI 136
Score = 23.1 bits (48), Expect = 5.1
Identities = 14/46 (30%), Positives = 24/46 (51%), Gaps = 2/46 (4%)
Query: 74 TEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQDS--VPPVQNNQ 117
T++ D L+ + KQE K ++ +N KQ+S P+Q +Q
Sbjct: 67 TKDEKKDDEFESLNMDSPKQEDKLDKVVDNIKKQESENSMPIQTDQ 112
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 27.7 bits (60), Expect = 0.21
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 39 KDSAPISPNVEKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQE 98
K + +KTE ERQ + + E T +S + + ++Q+T+QE
Sbjct: 138 KSGIKLEQERQKTEQERQK--TNKSEIELEQERQKTNKSGIELANSQIKAEQERQKTEQE 195
Query: 99 QEKENEPKQDSVPPVQNNQKTPTT 122
++K N + + Q QKT T
Sbjct: 196 KQKAN---KSEIELEQQKQKTINT 216
Score = 27.3 bits (59), Expect = 0.27
Identities = 20/91 (21%), Positives = 37/91 (39%)
Query: 38 KKDSAPISPNVEKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQ 97
K + + I E+ +T + L+ Q +A TE+ K ++ QKQ+T
Sbjct: 156 KTNKSEIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTIN 215
Query: 98 EQEKENEPKQDSVPPVQNNQKTPTTPLMGKK 128
Q + ++D + + N + L KK
Sbjct: 216 TQRDLIKEQKDFIKETEQNCQEKHGQLFIKK 246
Score = 23.5 bits (49), Expect = 3.9
Identities = 17/64 (26%), Positives = 27/64 (41%), Gaps = 4/64 (6%)
Query: 60 LSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKEN----EPKQDSVPPVQN 115
L +++EAN + E+ K T + E +QE++K N E + Q
Sbjct: 129 LEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQE 188
Query: 116 NQKT 119
QKT
Sbjct: 189 RQKT 192
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 26.9 bits (58), Expect = 0.35
Identities = 29/109 (26%), Positives = 42/109 (37%), Gaps = 6/109 (5%)
Query: 27 ALVHAALGFYVKKDSAPISPNVEKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPL 86
A A LG V S K + + L+P +E A SP K+ P +
Sbjct: 718 AFTRAELGLIVVAKDKKESKKESKNKKMHEQLELAPLEEGEIAPVI----SPQKE--PLM 771
Query: 87 DTAAQKQETKQEQEKENEPKQDSVPPVQNNQKTPTTPLMGKKPLEYKVA 135
+ K EQ +E E + DS N+Q+ + K LEY+ A
Sbjct: 772 TSVVIKPHAYGEQVQEIEEESDSDYEKNNDQEAINFGIALHKGLEYQYA 820
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 26.9 bits (58), Expect = 0.35
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 52 ETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQ 99
E Q + +EEA A+ EE+ T+ AP + K E K+E+
Sbjct: 469 EQAEQGCSIGENKEEAVASKENKEENKTEAAAPKENQTENKTEVKEEK 516
>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length = 1288
Score = 26.9 bits (58), Expect = 0.35
Identities = 15/59 (25%), Positives = 23/59 (38%)
Query: 65 EEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQDSVPPVQNNQKTPTTP 123
+ A A E KD + + + K+E + N + + P N QKT T P
Sbjct: 317 QSAGLNIIAPPEGGYKDKPNSTTSQSGTKNDKKEISQNNNSNTEVINPPNNTQKTETEP 375
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 26.9 bits (58), Expect = 0.35
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 45 SPNVEKTETERQNGVLSPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENE 104
+P +E+ ++ K+E + E TK T ++ +++E + EKE E
Sbjct: 281 APTLEEKNYQKAERKFDAKEERRRSRD---ERKKTKATKKAMEFEEREKEHDERDEKETE 337
Query: 105 PKQDSVPPVQNNQK 118
++ ++ + N+K
Sbjct: 338 ERRKALEMDKGNEK 351
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 26.9 bits (58), Expect = 0.35
Identities = 26/101 (25%), Positives = 45/101 (43%), Gaps = 7/101 (6%)
Query: 68 NATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQD--SVPPVQNNQKTPTTPLM 125
NA +++ TK+T P + + E E++KE PK+ VP V +N
Sbjct: 272 NAEFDFSQKKSTKETFDPNNVV--RSEQNLEEKKEGAPKKQVGGVPGVVSNIGPVQGLKD 329
Query: 126 GKKPLEYKVAVSGVNV---RAFPSTKGKILGLLLKNKSVKV 163
K+P +Y+ + + N + KG+ L+ N +V V
Sbjct: 330 NKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVV 370
>ref|NP_222985.1| LIPOPOLYSACCHARIDE HEPTOSYLTRANSFERASE-1 [Helicobacter pylori J99]
Length = 336
Score = 26.6 bits (57), Expect = 0.46
Identities = 31/119 (26%), Positives = 50/119 (41%), Gaps = 5/119 (4%)
Query: 73 ATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQDSVPPVQNNQKTPTTPLMGKKP-LE 131
A +E K + L A E + Q + K S P + K L G KP +
Sbjct: 131 AYDEPILKRNSTLLSQALNLPEKEISQGLSSRAKAFSYQP---SPKINALNLNGNKPKIL 187
Query: 132 YKVAVSGVNVRAFPSTKGKILGLLLKNKSVKVLEIQNDWAEIEFSHETKGYVFLKLLKK 190
+ + S +N + +P+ + K L L+L+N + +L N+ I H K + LL K
Sbjct: 188 FVLETSKIN-KTYPTERFKELALMLENFQICLLWHANEKKAITLYHALKYQRDVLLLPK 245
>ref|NP_222919.1| SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE [Helicobacter pylori J99]
Length = 388
Score = 26.6 bits (57), Expect = 0.46
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 85 PLDTAAQKQETKQEQEKEN-EPKQ-------DSVPPVQNNQKTPTTPLM 125
PL A+K+ K++ KEN +P D VPP N Q P P++
Sbjct: 55 PLKKHAEKEHAKEKHVKENVKPLHFCFAGHIDVVPPGNNWQSDPFKPII 103
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 25.8 bits (55), Expect = 0.79
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 45 SPNVEKTETERQNGVLSPKQEEANATTTATEE--SPTKDTAPPLDTAAQ---------KQ 93
S V+ ++Q+ L + E +A A ++ K+ + L +Q ++
Sbjct: 95 SQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLVSQIALIQK 154
Query: 94 ETKQEQEKENEPKQDSVPPVQNNQKTPTTPLMGKKPLEYKVAV 136
K+++EK +P + S P +N TP +K + K V
Sbjct: 155 ALKEQEEKAEKPLKSSTPANKNPPLKAETPKNQEKKTQEKAKV 197
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 24.6 bits (52), Expect = 1.8
Identities = 15/56 (26%), Positives = 23/56 (40%)
Query: 61 SPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQDSVPPVQNN 116
S K E+ NA E K+ PL+ K +E+E + ++ QNN
Sbjct: 404 SQKGEKGNAPIYLQERHKAKENKQPLEENKVKPRNSGFEEEEVKTRRPEPTKDQNN 459
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 24.6 bits (52), Expect = 1.8
Identities = 16/73 (21%), Positives = 33/73 (44%)
Query: 63 KQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQDSVPPVQNNQKTPTT 122
K+E A T+ + +K PL+ + K+E +++ + E + +P + +K
Sbjct: 148 KKEAKKAKEKTTKHAHSKHAHSPLNERSAKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPK 207
Query: 123 PLMGKKPLEYKVA 135
+ KK + K A
Sbjct: 208 KEIPKKEIPKKEA 220
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 23.9 bits (50), Expect = 3.0
Identities = 14/37 (37%), Positives = 18/37 (47%), Gaps = 1/37 (2%)
Query: 85 PLDTAAQKQETKQ-EQEKENEPKQDSVPPVQNNQKTP 120
P D +TK+ E+ +EN K PP N KTP
Sbjct: 765 PFDIRKVYYDTKKLERARENTFKHMLPPPPPTNPKTP 801
>ref|NP_223812.1| putative [Helicobacter pylori J99]
Length = 687
Score = 23.9 bits (50), Expect = 3.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 16 LLVVLAFMLLYALVHAALGFYVKKDSAPIS 45
++ +LA +++ AL H+ GF+ + PI+
Sbjct: 174 IIAILAMVVVKALAHSPWGFFTIAMTIPIA 203
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.9 bits (50), Expect = 3.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 76 ESPTKDTAPPLDTAAQKQETKQEQEKENEPKQDSV 110
ES + A P + K+ ++ QE+ E Q+SV
Sbjct: 233 ESTHESNAQPPKESQPKESQEESQEESQEESQESV 267
>ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE [Helicobacter
pylori J99]
Length = 353
Score = 23.9 bits (50), Expect = 3.0
Identities = 10/22 (45%), Positives = 13/22 (58%)
Query: 100 EKENEPKQDSVPPVQNNQKTPT 121
+K N+P VP QN + TPT
Sbjct: 47 KKANQPISSFVPSHQNKKDTPT 68
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 23.5 bits (49), Expect = 3.9
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 92 KQETKQEQEKENEPKQDSVPPVQNNQKTPTTPLMGKKPLEY--KVAVSGV 139
++E K+ +EP + P +++N+K K P EY KV SG+
Sbjct: 75 EEELKRIYFYVSEPFTEVEPRIKSNKKEELEEYKEKNPKEYEEKVNKSGI 124
>ref|NP_223884.1| SINGLE-STRAND BINDING PROTEIN [Helicobacter pylori J99]
Length = 181
Score = 23.1 bits (48), Expect = 5.1
Identities = 14/71 (19%), Positives = 31/71 (42%), Gaps = 1/71 (1%)
Query: 49 EKTETERQNGVL-SPKQEEANATTTATEESPTKDTAPPLDTAAQKQETKQEQEKENEPKQ 107
+K++ + N + S E N +P++D + Q TK+ + + Q
Sbjct: 107 KKSDNPQANSMQDSMTHENFNNAYPTNYNAPSQDPFSQAQSYPQNAYTKENSQAQPSKYQ 166
Query: 108 DSVPPVQNNQK 118
+SVP + +++
Sbjct: 167 NSVPEINIDEE 177
>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 511
Score = 23.1 bits (48), Expect = 5.1
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 77 SPTKDTAPPLDTAAQKQETKQEQEKENEPKQDSVPPVQNNQKTPTTPLMGKKPLEYKVAV 136
S T T+P ++ A K E K N P +P + Q PL G L+ +
Sbjct: 235 SDTTLTSPLVNFTALKSEYSFPALKLNAPYTLEIPHLAKLQNITNHPLKGSLTLKGDIEQ 294
Query: 137 SG--VNVRAFPSTKGKILGLLLKNKSVK 162
S + V + L L NK +K
Sbjct: 295 SPKLLKVSGHSNLLDGALDFTLLNKDLK 322
>ref|NP_223311.1| UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYLTRANSFERASE [Helicobacter pylori
J99]
Length = 422
Score = 22.7 bits (47), Expect = 6.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 17/65 (26%)
Query: 124 LMGKKPLEYKVAVSGVNVRAFPSTKGKILGLLLKNKSVKV-------------LEIQNDW 170
++G+ PL+ +V +SG A P + LL ++ VK+ L +QN
Sbjct: 6 IVGQVPLKGEVEISGAKNSALPI----LAATLLSHQEVKIKSLPQVVDIKAMALLLQNLG 61
Query: 171 AEIEF 175
AE+E+
Sbjct: 62 AELEW 66
>ref|NP_223160.1| PUTATIVE POTASSIUM CHANNEL PROTEIN [Helicobacter pylori J99]
Length = 378
Score = 22.7 bits (47), Expect = 6.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 1 MKTEMKSSLKLFMRPLLVVLAFMLLYALVHAALGFY 36
+ +E+ K+F PL+++ +LL L + AL Y
Sbjct: 22 LNSEIYEQFKVFRLPLILIQLLVLLGTLGYFALENY 57
>ref|NP_223118.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 123
Score = 22.7 bits (47), Expect = 6.7
Identities = 12/39 (30%), Positives = 19/39 (47%)
Query: 86 LDTAAQKQETKQEQEKENEPKQDSVPPVQNNQKTPTTPL 124
+D + +E E + N+ QD++ N KTPT L
Sbjct: 71 VDIILRLKEKLDELDNLNKELQDALHKHSKNTKTPTKNL 109
>ref|NP_223113.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 285
Score = 22.7 bits (47), Expect = 6.7
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 63 KQEEANATTTATEESPTKDTA 83
K+E+ T +ATEE+ T D +
Sbjct: 173 KEEKEETTKSATEETKTHDAS 193
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 22.7 bits (47), Expect = 6.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 89 AAQKQETKQEQEKENEPKQDSVPPVQNNQKTPTTP 123
AA E Q+ KEN+ ++S TP TP
Sbjct: 171 AAALTELWQKPPKENKENKESQKTTDPTPPTPPTP 205
>ref|NP_223294.1| Hydrogenase, cytochrome subunit [Helicobacter pylori J99]
Length = 224
Score = 22.3 bits (46), Expect = 8.7
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 9 LKLFMRPLLVVLAFMLLYALVHAALGFYVKKDSAPISPNVEKTETERQNGVLSPKQ--EE 66
L+ ++R V+ F+L+ AL+ F+ K+ E + +LSPK ++
Sbjct: 56 LQAYVRSFHVMFGFLLISALIFRTYLFFTKE---------SLMERRSFSQLLSPKAWIDQ 106
Query: 67 ANATTTATEESPTKDTAPPLDTAA 90
A +++ TK P+ A
Sbjct: 107 MKAYFLISDKPHTKGLYNPIQLVA 130
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.308 0.126 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,220
Number of Sequences: 1491
Number of extensions: 9078
Number of successful extensions: 112
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 68
length of query: 192
length of database: 494,079
effective HSP length: 73
effective length of query: 119
effective length of database: 385,236
effective search space: 45843084
effective search space used: 45843084
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 46 (22.3 bits)