BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645872|ref|NP_208050.1| conserved hypothetical
mitochondrial protein 4 [Helicobacter pylori 26695]
(154 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223897.1| putative [Helicobacter pylori J99] 282 3e-78
ref|NP_222842.1| L-serine transporter, similar to E. coli n... 33 0.003
ref|NP_223543.1| putative [Helicobacter pylori J99] 26 0.43
ref|NP_223697.1| 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYL TRANSFER... 25 0.73
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 25 0.73
ref|NP_223707.1| histidine kinase - MCP coupling protein [H... 25 1.3
ref|NP_222932.1| putative [Helicobacter pylori J99] 24 1.6
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 23 2.8
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 23 3.6
ref|NP_223651.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223018.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 23 4.8
ref|NP_223582.1| GERANYLTRANSTRANSFERASE [Helicobacter pylo... 22 6.2
ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99] 22 8.1
>ref|NP_223897.1| putative [Helicobacter pylori J99]
Length = 152
Score = 282 bits (721), Expect = 3e-78
Identities = 141/152 (92%), Positives = 145/152 (94%), Gaps = 2/152 (1%)
Query: 1 MATKKTKKNKTPKKKQALESPLKGLYLSLRLKAFITDIFMIYTPMLYIMTYAILGSAKDF 60
MATKKTKKNK +KKQALE+PLKGLYLSLRLKAFITDIFMIYTPMLYIMTYAILGSAKDF
Sbjct: 1 MATKKTKKNK--EKKQALENPLKGLYLSLRLKAFITDIFMIYTPMLYIMTYAILGSAKDF 58
Query: 61 RENQSAIFLCLLFYALTHSFFIAFKSQSPGMRYARFKLIKNNGEKVGFFLALWRFVLWVL 120
RENQSAIFLCLLFYALTHSFFIAFKSQSPGMRYARFKL+KNNGEKV FFLALWRFVLWVL
Sbjct: 59 RENQSAIFLCLLFYALTHSFFIAFKSQSPGMRYARFKLVKNNGEKVDFFLALWRFVLWVL 118
Query: 121 SMGLLIGFVTPFIFKFFLHDKLSGTHIETIKE 152
SMGLL+GFV PFIFKFFLHDK S THIE IKE
Sbjct: 119 SMGLLVGFVAPFIFKFFLHDKFSSTHIEIIKE 150
>ref|NP_222842.1| L-serine transporter, similar to E. coli nhaB [Helicobacter pylori
J99]
Length = 413
Score = 33.5 bits (75), Expect = 0.003
Identities = 27/78 (34%), Positives = 40/78 (50%), Gaps = 5/78 (6%)
Query: 46 LYIMTY---AILGSAKDFRENQSAIFLCL--LFYALTHSFFIAFKSQSPGMRYARFKLIK 100
LY++ Y A L F+E AI+L L L ++ HS I+ +Q+ G Y FK K
Sbjct: 175 LYLIPYWQGANLFVVPSFKEFVLAIWLTLPVLVFSFNHSPIISTFTQNVGKEYGAFKEYK 234
Query: 101 NNGEKVGFFLALWRFVLW 118
N ++G L L FV++
Sbjct: 235 LNQIELGTSLMLLGFVMF 252
>ref|NP_223543.1| putative [Helicobacter pylori J99]
Length = 100
Score = 26.2 bits (56), Expect = 0.43
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 8 KNKTPKKKQALESPLKGLYLSLRLKAFITDIFMIYTPMLYIMTYAILGS 56
+N+ P K+ + L G Y R + D+ ++Y ++T LGS
Sbjct: 36 RNQIPLDKRFKDHALSGTYKGCRERHIKPDVLLVYRVKGNVLTLVRLGS 84
>ref|NP_223697.1| 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYL TRANSFERASE [Helicobacter pylori
J99]
Length = 429
Score = 25.4 bits (54), Expect = 0.73
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 20 SPLKGLYLSLRLKAFITDIFMIYTPMLYIMTYAILGSAKDFRENQS 65
+PLK + + + + I +I + ML+ +++ +AKD R +S
Sbjct: 286 APLKAISIDQNIASLIDEIPALSIAMLFAKGKSMVRNAKDLRAKES 331
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 25.4 bits (54), Expect = 0.73
Identities = 11/27 (40%), Positives = 18/27 (65%)
Query: 8 KNKTPKKKQALESPLKGLYLSLRLKAF 34
+NK K+K+ALE +G L+ + KA+
Sbjct: 83 ENKYKKEKEALEKETRGKILTAKSKAY 109
>ref|NP_223707.1| histidine kinase - MCP coupling protein [Helicobacter pylori J99]
Length = 165
Score = 24.6 bits (52), Expect = 1.3
Identities = 7/19 (36%), Positives = 14/19 (72%)
Query: 95 RFKLIKNNGEKVGFFLALW 113
R+ ++++N + GFF+A W
Sbjct: 98 RYLVVRHNDQIAGFFIAFW 116
>ref|NP_222932.1| putative [Helicobacter pylori J99]
Length = 277
Score = 24.3 bits (51), Expect = 1.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 9 NKTPKKKQALE-SPLKGLYLSLRLKAFITDIFMI 41
NKTP+KK+A+ + + L L F+T IF I
Sbjct: 138 NKTPEKKRAIPFVSMDRTHGVLMLAGFVTGIFSI 171
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 23.5 bits (49), Expect = 2.8
Identities = 8/13 (61%), Positives = 12/13 (91%)
Query: 33 AFITDIFMIYTPM 45
+FIT +FM+YTP+
Sbjct: 278 SFITALFMLYTPI 290
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 23.1 bits (48), Expect = 3.6
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 107 GFFLALWRFVLWVLSMGLLIG 127
G+ L +W F+ + MG+ +G
Sbjct: 363 GYMLIVWDFIRYAKEMGIPVG 383
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 23.1 bits (48), Expect = 3.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 4 KKTKKNKTPKKKQALESPLKGLYLSLRLKAFIT 36
K T++ K K+ + L++ KG+ ++ L F T
Sbjct: 97 KNTQEQKLLKQLERLQNKEKGIMKTMNLNEFFT 129
>ref|NP_223018.1| putative [Helicobacter pylori J99]
Length = 381
Score = 23.1 bits (48), Expect = 3.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 108 FFLALWRFVLWVLSMGLLI 126
F+L +WRF+ V S L+I
Sbjct: 92 FWLWIWRFIAGVASSALMI 110
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 22.7 bits (47), Expect = 4.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 8 KNKTPKKKQALESPLKGLYLSL 29
+NKT K++ +E P K YL L
Sbjct: 507 ENKTEVKEEKIEVPTKTTYLLL 528
>ref|NP_223582.1| GERANYLTRANSTRANSFERASE [Helicobacter pylori J99]
Length = 303
Score = 22.3 bits (46), Expect = 6.2
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 16 QALESPLKGLYLSLR------LKAFITDIF---MIYTPMLYIMTYAILGSAKDFRENQSA 66
+ ES LK YL L KAF + + P L++ L KD+ Q+
Sbjct: 14 ERFESFLKNHYLHLEGFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCSLVGKKDYSNQQTE 73
Query: 67 IFL------CLLFYALTH 78
F CL Y+L H
Sbjct: 74 YFKIALSIECLHTYSLIH 91
>ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99]
Length = 496
Score = 21.9 bits (45), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 11 TPKKKQALESPLKGLYLSLRLKAFITDIF 39
T K AL LK L+L L+L + D F
Sbjct: 98 THAKDNALLENLKALFLGLKLGLYEYDTF 126
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.330 0.143 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,379
Number of Sequences: 1491
Number of extensions: 6955
Number of successful extensions: 34
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 14
length of query: 154
length of database: 494,079
effective HSP length: 70
effective length of query: 84
effective length of database: 389,709
effective search space: 32735556
effective search space used: 32735556
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)