BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645874|ref|NP_208052.1| NADH-ubiquinone
oxidoreductase, NQO7 subunit (NQO7) [Helicobacter pylori 26695]
         (133 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223899.1|  NADH oxidoreductase I [Helicobacter pylori...   264  7e-73
ref|NP_223589.1|  proline/betaine transporter [Helicobacter ...    25  0.56
ref|NP_223345.1|  FERROUS IRON TRANSPORT PROTEIN B [Helicoba...    25  0.56
ref|NP_222994.1|  putative [Helicobacter pylori J99]               23  2.1
ref|NP_224192.1|  putative [Helicobacter pylori J99]               23  3.6
ref|NP_223806.1|  putative [Helicobacter pylori J99]               23  3.6
ref|NP_223461.1|  IRON(III) DICITRATE TRANSPORT PROTEIN [Hel...    22  8.1
ref|NP_222853.1|  Cytochrome oxidase (CBB3-TYPE) [Helicobact...    22  8.1

>ref|NP_223899.1| NADH oxidoreductase I [Helicobacter pylori J99]
          Length = 133

 Score =  264 bits (674), Expect = 7e-73
 Identities = 129/133 (96%), Positives = 129/133 (96%)

Query: 1   MQQATEALNHPYFGVFVLLVFTFWVFNLTLRIQRFLSRKMAQKKGEKLKLAPYECGPVAL 60
           MQQA E LNHPYFGVFVLLVFTFWVFNLTLRIQRFLSRKMAQKKGEKLKLAPYECGPVAL
Sbjct: 1   MQQAAETLNHPYFGVFVLLVFTFWVFNLTLRIQRFLSRKMAQKKGEKLKLAPYECGPVAL 60

Query: 61  KQPNRVSHHFYIMAMLFILFDVEIVFMFPWAIGFKKLGLFGLVEMLGFVFFLTIGFIYAL 120
           KQPNRVSHHFYIMAMLFILFDVEIVFMFPWAI FKKLGLFGLVEMLGFVFFL IGFIYAL
Sbjct: 61  KQPNRVSHHFYIMAMLFILFDVEIVFMFPWAIDFKKLGLFGLVEMLGFVFFLAIGFIYAL 120

Query: 121 KRNALSWQKLEVK 133
           KRNALSWQKLEVK
Sbjct: 121 KRNALSWQKLEVK 133



>ref|NP_223589.1| proline/betaine transporter [Helicobacter pylori J99]
          Length = 452

 Score = 25.4 bits (54), Expect = 0.56
 Identities = 8/30 (26%), Positives = 19/30 (62%)

Query: 76  LFILFDVEIVFMFPWAIGFKKLGLFGLVEM 105
           ++++FD  +V  + W + F   G+FG++ +
Sbjct: 182 IYMVFDKPVVEDWAWRVAFGLGGIFGIISV 211



>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
          Length = 642

 Score = 25.4 bits (54), Expect = 0.56
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 8   LNHPYFGVFVLLVFTFWVFNLTLRI 32
           L H  +G+F+ L F F +F+L+  I
Sbjct: 220 LMHQRYGIFIFLGFMFIIFSLSFLI 244



>ref|NP_222994.1| putative [Helicobacter pylori J99]
          Length = 157

 Score = 23.5 bits (49), Expect = 2.1
 Identities = 18/85 (21%), Positives = 39/85 (45%)

Query: 47  KLKLAPYECGPVALKQPNRVSHHFYIMAMLFILFDVEIVFMFPWAIGFKKLGLFGLVEML 106
           +L L P+E G +  +   R ++    +  + +L+++     +  ++ +  LG+      L
Sbjct: 40  ELNLTPFESGKLMAQIFVRFNYVLGAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCL 99

Query: 107 GFVFFLTIGFIYALKRNALSWQKLE 131
            FVF+ T   + A K   ++ Q  E
Sbjct: 100 LFVFYYTPYILNAQKVGEVALQSAE 124



>ref|NP_224192.1| putative [Helicobacter pylori J99]
          Length = 147

 Score = 22.7 bits (47), Expect = 3.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 77  FILFDVEIVFMFPWAIGFKKLGLFGLVEML 106
           F+++ + +   F  ++G K LGLF L  ++
Sbjct: 105 FLVYYLYLSCFFSVSLGLKTLGLFALFALI 134



>ref|NP_223806.1| putative [Helicobacter pylori J99]
          Length = 193

 Score = 22.7 bits (47), Expect = 3.6
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 71  YIMAMLFI---LFDVEIVFMFPWAIGFKKLGLFGLVEMLGFVFFLTIGFIYALKRNALSW 127
           Y + M+F+   L+ ++ V   P AIGF K  L   + +  F  FL    + ++   A  W
Sbjct: 97  YALLMIFVNKYLYGIKSVV--PLAIGFSKYPLKKFLWLNVFSSFLWALIVGSVSFQASDW 154

Query: 128 QK 129
            K
Sbjct: 155 VK 156



>ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori J99]
          Length = 792

 Score = 21.6 bits (44), Expect = 8.1
 Identities = 10/17 (58%), Positives = 11/17 (63%), Gaps = 2/17 (11%)

Query: 11 PYFGVFVLLVFTFWVFN 27
          PYF   V+L  TFW FN
Sbjct: 10 PYFLASVVL--TFWTFN 24



>ref|NP_222853.1| Cytochrome oxidase (CBB3-TYPE) [Helicobacter pylori J99]
          Length = 488

 Score = 21.6 bits (44), Expect = 8.1
 Identities = 8/23 (34%), Positives = 12/23 (51%)

Query: 10  HPYFGVFVLLVFTFWVFNLTLRI 32
           HP+  +  LL F  W+  L L +
Sbjct: 93  HPFLKIVGLLHFWLWILLLVLGV 115



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.335    0.147    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,620
Number of Sequences: 1491
Number of extensions: 5139
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 9
length of query: 133
length of database: 494,079
effective HSP length: 69
effective length of query: 64
effective length of database: 391,200
effective search space: 25036800
effective search space used: 25036800
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 44 (21.6 bits)