BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645875|ref|NP_208053.1| NADH-ubiquinone
oxidoreductase, NQO6 subunit (NQO6) [Helicobacter pylori 26695]
(159 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223900.1| NADH oxidoreductase I [Helicobacter pylori... 326 2e-91
ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARB... 25 0.77
ref|NP_224188.1| putative [Helicobacter pylori J99] 23 3.8
ref|NP_223191.1| cag island protein, DNA transfer protein [... 23 3.8
>ref|NP_223900.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 159
Score = 326 bits (836), Expect = 2e-91
Identities = 158/159 (99%), Positives = 159/159 (99%)
Query: 1 MQQAPVVLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQ 60
MQQAPV+LSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQ
Sbjct: 1 MQQAPVILSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQ 60
Query: 61 SDVMIIAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFNTYATVQGADRVVPVD 120
SDVMIIAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFNTYATVQGADRVVPVD
Sbjct: 61 SDVMIIAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFNTYATVQGADRVVPVD 120
Query: 121 IYLPGCAPRPETLQYALMVLQDKIRRSKAIKQDAPKRLV 159
IYLPGCAPRPETLQYALMVLQDKIRRSKAIKQDAPKRLV
Sbjct: 121 IYLPGCAPRPETLQYALMVLQDKIRRSKAIKQDAPKRLV 159
>ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE
N-SUCCINYLTRANSFERASE [Helicobacter pylori J99]
Length = 401
Score = 25.4 bits (54), Expect = 0.77
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 15/105 (14%)
Query: 15 LNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGT-IFRASPRQSDVMIIAGTLTKK 73
L W R+N + A++M S D+F + + P ++ ++ + T+
Sbjct: 189 LEWLRTNEV----------ALKMRGNFPSIDFIDKFPRYLMQLIPEFDNIRLLDSSKTRF 238
Query: 74 HAEFMRRLYDQMPEPKWVI----SMGSCANTGGMFNTYATVQGAD 114
A Y QMP +V +MG+C N G + ++ +G D
Sbjct: 239 GAYLGTGGYTQMPGASYVNFNAGAMGACMNEGRISSSVVVGEGTD 283
>ref|NP_224188.1| putative [Helicobacter pylori J99]
Length = 333
Score = 23.1 bits (48), Expect = 3.8
Identities = 13/32 (40%), Positives = 17/32 (52%), Gaps = 6/32 (18%)
Query: 91 VISMGSCANTGGMFNTYATVQGADRVVPVDIY 122
+I +GS A MFNT+ DRVV + Y
Sbjct: 52 IIYLGSFAEVPAMFNTW------DRVVGISDY 77
>ref|NP_223191.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 748
Score = 23.1 bits (48), Expect = 3.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 71 TKKHAEFMRRLYDQMPEPKWVISMGSCAN 99
TKK EF++R MPE + +GS A+
Sbjct: 380 TKKGLEFVKRKKIIMPETPTMFFIGSMAS 408
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,775
Number of Sequences: 1491
Number of extensions: 5030
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 159
length of database: 494,079
effective HSP length: 71
effective length of query: 88
effective length of database: 388,218
effective search space: 34163184
effective search space used: 34163184
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)