BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645878|ref|NP_208056.1| hypothetical protein
[Helicobacter pylori 26695]
(76 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223903.1| putative NADH oxidoreductase I [Helicobact... 150 5e-39
ref|NP_223621.1| putative cation efflux system protein [Hel... 25 0.38
ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 23 0.85
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 23 0.85
ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylor... 22 1.9
ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 22 1.9
ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEI... 22 3.2
ref|NP_222974.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_224010.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_223055.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 20 7.2
ref|NP_224000.1| putative histidine kinase sensor protein [... 20 7.2
ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 20 7.2
ref|NP_223966.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 20 7.2
ref|NP_223915.1| putative [Helicobacter pylori J99] 20 9.4
ref|NP_222955.1| putative [Helicobacter pylori J99] 20 9.4
ref|NP_222887.1| sialic acid synthase [Helicobacter pylori ... 20 9.4
>ref|NP_223903.1| putative NADH oxidoreductase I [Helicobacter pylori J99]
Length = 76
Score = 150 bits (379), Expect = 5e-39
Identities = 75/76 (98%), Positives = 75/76 (98%)
Query: 1 MKRFDLRPLKAGIFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNS 60
MKRFDLRPLKA IFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNS
Sbjct: 1 MKRFDLRPLKADIFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNS 60
Query: 61 LRFNQADWTIVVRKKA 76
LRFNQADWTIVVRKKA
Sbjct: 61 LRFNQADWTIVVRKKA 76
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 24.6 bits (52), Expect = 0.38
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 32 IFMFEVGDFSNIPKSAEFIQSKGHELLNSL 61
I +F VG++ ++P S FI G +LN +
Sbjct: 898 IALFAVGEYISVPASVGFIALFGIAVLNGV 927
>ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 613
Score = 23.5 bits (49), Expect = 0.85
Identities = 11/36 (30%), Positives = 22/36 (60%), Gaps = 2/36 (5%)
Query: 25 MQPNEVAIFMFEVGDFSNIPKSA--EFIQSKGHELL 58
+ PN+ F+ + +SNIPK + + + +KG+ +L
Sbjct: 92 LNPNKEDFFIDFLSIYSNIPKESLKDALNTKGYTIL 127
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 23.5 bits (49), Expect = 0.85
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 45 KSAEFIQSKGHELLNSLRFNQADWTIVVRKK 75
+ EF+ S G L ++ N+ DW + ++K
Sbjct: 443 EKVEFVPSSGKNRLKTMIENRPDWCLSRQRK 473
>ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 847
Score = 22.3 bits (46), Expect = 1.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 48 EFIQSKGHELLNSLRFNQADWTIV 71
+F Q+KGHE+ S+ D T++
Sbjct: 9 QFFQNKGHEIYPSMPLVPNDATLL 32
>ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 528
Score = 22.3 bits (46), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 41 SNIPKSAEFIQSKGHELLNSLRFNQA 66
SN P S ++I L+N RFN+A
Sbjct: 314 SNPPYSTKWIGDNNPLLMNDERFNKA 339
>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR [Helicobacter
pylori J99]
Length = 277
Score = 21.6 bits (44), Expect = 3.2
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 14/56 (25%)
Query: 10 KAGIFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNSLRFNQ 65
K G+ + +EEL +KE+ N+ +A+F +K + + L+F Q
Sbjct: 138 KDGVIKNIEELKDKELIVNK--------------GTTADFYFTKNYPNIKLLKFEQ 179
>ref|NP_222974.1| putative [Helicobacter pylori J99]
Length = 80
Score = 21.2 bits (43), Expect = 4.2
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 17 LEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGH 55
LE+L +K + + ++ K+ +F + KGH
Sbjct: 19 LEDLYKKFNEDKRSIFYFAPTNAHKDMLKAVDFFKEKGH 57
>ref|NP_224010.1| putative [Helicobacter pylori J99]
Length = 220
Score = 20.8 bits (42), Expect = 5.5
Identities = 7/13 (53%), Positives = 11/13 (83%)
Query: 15 ERLEELIEKEMQP 27
ER++E +EKE +P
Sbjct: 194 ERIDETLEKETKP 206
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 20.8 bits (42), Expect = 5.5
Identities = 9/26 (34%), Positives = 17/26 (64%), Gaps = 2/26 (7%)
Query: 9 LKAG--IFERLEELIEKEMQPNEVAI 32
LK G + + +EE +++ PN++AI
Sbjct: 253 LKQGALVLQTIEEYLQENNDPNKMAI 278
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 20.4 bits (41), Expect = 7.2
Identities = 8/22 (36%), Positives = 15/22 (67%)
Query: 8 PLKAGIFERLEELIEKEMQPNE 29
P K G E L+E +++++ P+E
Sbjct: 438 PEKVGFDEVLKEYLKEDLIPHE 459
>ref|NP_224000.1| putative histidine kinase sensor protein [Helicobacter pylori
J99]
Length = 344
Score = 20.4 bits (41), Expect = 7.2
Identities = 7/13 (53%), Positives = 12/13 (91%)
Query: 40 FSNIPKSAEFIQS 52
+SNIP+SA+ I++
Sbjct: 47 YSNIPESADLIKT 59
>ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 359
Score = 20.4 bits (41), Expect = 7.2
Identities = 8/31 (25%), Positives = 19/31 (60%)
Query: 37 VGDFSNIPKSAEFIQSKGHELLNSLRFNQAD 67
+G F NI + +Q+ G +LN + +++++
Sbjct: 93 IGSFQNIFRIGFHLQNLGFWILNDIVWHKSN 123
>ref|NP_223966.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 341
Score = 20.4 bits (41), Expect = 7.2
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 56 ELLNSLRFNQ 65
ELL+SL+FNQ
Sbjct: 113 ELLSSLKFNQ 122
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 20.0 bits (40), Expect = 9.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 14 FERLEELIEKEMQ 26
FER +EL+E+E Q
Sbjct: 75 FEREKELMEEEFQ 87
>ref|NP_222955.1| putative [Helicobacter pylori J99]
Length = 179
Score = 20.0 bits (40), Expect = 9.4
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 7 RPLKAGIFERLEELIEKEMQPNEVAIFMFEVGDF 40
R K + + E+ ++++ P E +F F + D+
Sbjct: 131 RAFKWFVKKSYEKTFKEKILPEESKVFSFFIDDY 164
>ref|NP_222887.1| sialic acid synthase [Helicobacter pylori J99]
Length = 340
Score = 20.0 bits (40), Expect = 9.4
Identities = 15/47 (31%), Positives = 21/47 (43%)
Query: 15 ERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNSL 61
E L L +K P E +FE+ ++ + SK ELL SL
Sbjct: 66 ENLYGLYQKASTPLEWHAELFELAKKLDLGIFSSPFSSKALELLESL 112
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.138 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,409
Number of Sequences: 1491
Number of extensions: 2814
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 76
length of database: 494,079
effective HSP length: 52
effective length of query: 24
effective length of database: 416,547
effective search space: 9997128
effective search space used: 9997128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 40 (20.0 bits)