BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645883|ref|NP_208061.1| NADH-ubiquinone
oxidoreductase, NQO10 subunit (NQO10) [Helicobacter pylori 26695]
(182 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223908.1| NADH oxidoreductase I [Helicobacter pylori... 342 4e-96
ref|NP_224097.1| putative [Helicobacter pylori J99] 34 0.002
ref|NP_223735.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_222744.1| CITRATE SYNTHASE [Helicobacter pylori J99] 25 1.6
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 23 3.6
ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRAN... 23 4.7
ref|NP_222890.1| putative [Helicobacter pylori J99] 23 4.7
ref|NP_223990.1| putative [Helicobacter pylori J99] 22 8.1
ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99] 22 8.1
>ref|NP_223908.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 182
Score = 342 bits (877), Expect = 4e-96
Identities = 180/182 (98%), Positives = 181/182 (98%)
Query: 1 MFETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITV 60
MFETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITV
Sbjct: 1 MFETIAFYFFAILTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITV 60
Query: 61 YVGAVIVMYAFGMMFFNSAAEVVERKQSPKILCILSFGVALLLTLILSAPSIGENLSNQV 120
YVGAVIVMYAFGMMFFNSAAEVVERKQSPKILC+LSFGVALLLTLILSAPSIGENLS QV
Sbjct: 61 YVGAVIVMYAFGMMFFNSAAEVVERKQSPKILCVLSFGVALLLTLILSAPSIGENLSKQV 120
Query: 121 NSNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKE 180
NSNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKE
Sbjct: 121 NSNAIDAQIPNIKAIGYVLFTNYLIPFEAAALMLLVAMVGGIATGIQKIHGKNHTQFIKE 180
Query: 181 SL 182
SL
Sbjct: 181 SL 182
>ref|NP_224097.1| putative [Helicobacter pylori J99]
Length = 376
Score = 34.3 bits (77), Expect = 0.002
Identities = 44/166 (26%), Positives = 77/166 (45%), Gaps = 19/166 (11%)
Query: 27 ILYAITALASSMVFISAFF--FLLDAEFLGV---VQITVYVGA--VIVMYAFGMMFFNSA 79
IL+ + +ASSM S LLD + + + ++ V++GA V V++ FG +F +
Sbjct: 190 ILHQVMLIASSMFTSSRRLELALLDKKQIALRLCARLLVFMGAFSVFVLWYFGALF---S 246
Query: 80 AEVVERKQSPKILCILSFGVALLLTLILSAPSIGENLSNQVNSNAIDAQIPNIKAIGYVL 139
+ER S ++ + S L +L+A S+G L + + A QI I ++ +
Sbjct: 247 FYGIERHGSALMVFLNS------LIFMLAALSLGSFLGAWIKNEAHTTQIVLISSLPLIF 300
Query: 140 FTNYLIPFEAAALMLLV-AMVGGIATGIQKIHGKN--HTQFIKESL 182
++ PFE+ L V + GI + N H +FI S+
Sbjct: 301 MMGFVWPFESLPSYLQVFVQIVPAYHGISLLGRLNQMHAEFIDVSI 346
>ref|NP_223735.1| putative [Helicobacter pylori J99]
Length = 345
Score = 24.6 bits (52), Expect = 1.6
Identities = 18/89 (20%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 13 LTLSMALVVITTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYVGAVIVMYAFG 72
L ++++ V + +L+ I+++ ++ I++ ++ FL +VQ+ +Y + +
Sbjct: 6 LFMAVSQVFFSFFLVLFFISSIVL-LISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64
Query: 73 MMFFNSAAEVVER-KQSPKILCILSFGVA 100
+ FF + A + R ++L S GV+
Sbjct: 65 ITFFAACALGLSRLSYDHELLVFFSLGVS 93
>ref|NP_222744.1| CITRATE SYNTHASE [Helicobacter pylori J99]
Length = 426
Score = 24.6 bits (52), Expect = 1.6
Identities = 15/43 (34%), Positives = 23/43 (52%)
Query: 95 LSFGVALLLTLILSAPSIGENLSNQVNSNAIDAQIPNIKAIGY 137
LS GV++L TL + ++ Q + I A+IP + AI Y
Sbjct: 135 LSSGVSILSTLYSTHQNMHTEEDYQTMARRIVAKIPTLAAICY 177
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 23.5 bits (49), Expect = 3.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 114 ENLSNQVNSNAIDAQIPNIKAI 135
EN NQ +NA ++ PN KAI
Sbjct: 49 ENALNQAINNAKNSLFPNTKAI 70
>ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE [Helicobacter
pylori J99]
Length = 353
Score = 23.1 bits (48), Expect = 4.7
Identities = 10/44 (22%), Positives = 23/44 (51%)
Query: 65 VIVMYAFGMMFFNSAAEVVERKQSPKILCILSFGVALLLTLILS 108
+IV+ F + F + ++ + + + FG+ +L+LI+S
Sbjct: 97 IIVLVGFSFVGFRDDYTKINQQNNAGMSAKMKFGMLFILSLIVS 140
>ref|NP_222890.1| putative [Helicobacter pylori J99]
Length = 236
Score = 23.1 bits (48), Expect = 4.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 23 TTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYVGAVIVMYAFGMMF 75
T TN++ + LAS VF A LL ++ V+ G I+ A G +F
Sbjct: 63 TMTNLIGFLLVLASIWVFFLALGVLLG-------KMLVFSGLGIIDKALGFIF 108
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 22.3 bits (46), Expect = 8.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 161 GIATGIQKIHGKNHTQFIKESL 182
GI TG KI N+T+ +KE +
Sbjct: 725 GIVTGKDKIFIANNTESLKEQV 746
>ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99]
Length = 508
Score = 22.3 bits (46), Expect = 8.1
Identities = 16/49 (32%), Positives = 26/49 (52%), Gaps = 4/49 (8%)
Query: 71 FGMMFFNSAAEVVERKQ---SPKILCILSFGVALLLTLILSAPSIGENL 116
+GM F + E+V K+ + K+LC +S GV + L +I +NL
Sbjct: 190 WGMQHF-AQREIVRLKEKIANAKVLCAVSGGVDSTVVATLLHRAIKDNL 237
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.330 0.141 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,113
Number of Sequences: 1491
Number of extensions: 5914
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 10
length of query: 182
length of database: 494,079
effective HSP length: 72
effective length of query: 110
effective length of database: 386,727
effective search space: 42539970
effective search space used: 42539970
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 46 (22.3 bits)