BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645884|ref|NP_208062.1| NADH-ubiquinone
oxidoreductase, NQO11 subunit (NQO11) [Helicobacter pylori 26695]
(100 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223909.1| NADH oxidoreductase I [Helicobacter pylori... 192 2e-51
ref|NP_223316.1| NONHEME IRON-CONTAINING FERRITIN [Helicoba... 26 0.19
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 23 1.2
ref|NP_223392.1| PHOSPHATIDYLGLYCEROPHOSPHATASE A [Helicoba... 22 3.6
ref|NP_223141.1| GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYS... 22 3.6
ref|NP_223686.1| putative [Helicobacter pylori J99] 22 4.7
ref|NP_223990.1| putative [Helicobacter pylori J99] 21 6.1
ref|NP_223409.1| putative [Helicobacter pylori J99] 21 7.9
ref|NP_223019.1| putative [Helicobacter pylori J99] 21 7.9
ref|NP_222847.1| putative [Helicobacter pylori J99] 21 7.9
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 21 7.9
>ref|NP_223909.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 100
Score = 192 bits (487), Expect = 2e-51
Identities = 97/100 (97%), Positives = 100/100 (100%)
Query: 1 MIGLNHYLIVSGLLFCIGLAGMLKRKNILLLFFSTEIMLNAINIGFVAISKYTHNLDGQM 60
MIGLNHYLIVSGLLFCIGLAGMLKRKNILLLFFSTEIMLNAINIGFVAIS+YTHNLDGQM
Sbjct: 1 MIGLNHYLIVSGLLFCIGLAGMLKRKNILLLFFSTEIMLNAINIGFVAISRYTHNLDGQM 60
Query: 61 FALFIISIAASEVAIGLGLVILWFKKFKSLDIDSLNAMKG 100
FALFII+IAASEVAIGLGLVILWFKK+KSLDIDSLNAMKG
Sbjct: 61 FALFIIAIAASEVAIGLGLVILWFKKYKSLDIDSLNAMKG 100
>ref|NP_223316.1| NONHEME IRON-CONTAINING FERRITIN [Helicobacter pylori J99]
Length = 167
Score = 26.2 bits (56), Expect = 0.19
Identities = 23/78 (29%), Positives = 39/78 (49%), Gaps = 5/78 (6%)
Query: 22 MLKRKNILLLFFSTEIMLNAINIGFVAISK--YTHNLDGQMFALFIISIAASEVAIGLGL 79
ML + I LL +N+ N+ ++++S YTH+LDG LF+ AA E L
Sbjct: 1 MLSKDIIKLLNEQVNKEMNSSNL-YMSMSSWCYTHSLDGA--GLFLFDHAAEEYEHAKKL 57
Query: 80 VILWFKKFKSLDIDSLNA 97
+I + + + S++A
Sbjct: 58 IIFLNENNVPVQLTSISA 75
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 23.5 bits (49), Expect = 1.2
Identities = 17/63 (26%), Positives = 24/63 (37%), Gaps = 8/63 (12%)
Query: 2 IGLNHYLIVSGLLFCIGLAGMLKRKNILLLFFSTEIMLNAINIGFVAISKYTHNLDGQMF 61
+GL HY IGLA + NI T+ + N + + T+N F
Sbjct: 1080 LGLRHYFFFDYGFSEIGLANQSVKANIFAYGVGTDFLWN--------LFRRTYNTKALNF 1131
Query: 62 ALF 64
LF
Sbjct: 1132 GLF 1134
>ref|NP_223392.1| PHOSPHATIDYLGLYCEROPHOSPHATASE A [Helicobacter pylori J99]
Length = 158
Score = 21.9 bits (45), Expect = 3.6
Identities = 8/23 (34%), Positives = 16/23 (68%)
Query: 29 LLLFFSTEIMLNAINIGFVAISK 51
+L+F + + L AI +G +AI++
Sbjct: 38 ILIFSANTLFLGAIFVGLIAITQ 60
>ref|NP_223141.1| GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYSTEM PROTEIN
[Helicobacter pylori J99]
Length = 416
Score = 21.9 bits (45), Expect = 3.6
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 7 YLIVSGLLFCIGLAGMLKRKN--ILLLFFSTEIMLNAINIGFVAISKYTHNLD----GQM 60
Y++++GL +G LK+ + +++ + T +L A F I+ + D G +
Sbjct: 7 YIVIAGLWLAVGFGIFLKKLDMPVIIGYICTGTVLAA----FFKINDFNLLSDIGEFGIV 62
Query: 61 FALFIISI 68
F +F+I I
Sbjct: 63 FLMFMIGI 70
>ref|NP_223686.1| putative [Helicobacter pylori J99]
Length = 623
Score = 21.6 bits (44), Expect = 4.7
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 10 VSGLLFCIGLAGM---LKRKNILLLFFSTEIML 39
VS ++ +G+ G+ L K++L FF++ I+L
Sbjct: 389 VSAIIASLGIGGLAVALAVKDVLANFFASVILL 421
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 21.2 bits (43), Expect = 6.1
Identities = 10/19 (52%), Positives = 12/19 (62%)
Query: 17 IGLAGMLKRKNILLLFFST 35
+GL L KNI LL F+T
Sbjct: 343 LGLKSALDNKNIKLLDFAT 361
>ref|NP_223409.1| putative [Helicobacter pylori J99]
Length = 79
Score = 20.8 bits (42), Expect = 7.9
Identities = 11/37 (29%), Positives = 22/37 (58%), Gaps = 1/37 (2%)
Query: 64 FIISIAASEVAIGLGLVI-LWFKKFKSLDIDSLNAMK 99
F I++ + + L+ L ++ KSLD+D+L ++K
Sbjct: 11 FKIALVKKDSKLAFSLIERLSLEQIKSLDLDALLSLK 47
>ref|NP_223019.1| putative [Helicobacter pylori J99]
Length = 251
Score = 20.8 bits (42), Expect = 7.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 1 MIGLNHYLIVSGLLFCIGLAGMLKRKNILLLFF 33
+IGL LI+S +F + A R + + LF+
Sbjct: 53 IIGLMGLLIISSAIFGLTQAITSSRSHNIFLFY 85
>ref|NP_222847.1| putative [Helicobacter pylori J99]
Length = 481
Score = 20.8 bits (42), Expect = 7.9
Identities = 8/12 (66%), Positives = 9/12 (74%)
Query: 2 IGLNHYLIVSGL 13
IGLNHYL G+
Sbjct: 121 IGLNHYLKEKGI 132
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 20.8 bits (42), Expect = 7.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 26 KNILLLFFSTEIMLNAINIGFVAISKYTHNLDGQM 60
K LLL S +LNA + GF + Y QM
Sbjct: 2 KKTLLLSLSASSLLNAEDNGFFISAGYQIGEAAQM 36
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.332 0.147 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,898
Number of Sequences: 1491
Number of extensions: 3402
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 12
length of query: 100
length of database: 494,079
effective HSP length: 64
effective length of query: 36
effective length of database: 398,655
effective search space: 14351580
effective search space used: 14351580
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 42 (20.8 bits)