BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644758|ref|NP_206928.1| hypothetical protein
[Helicobacter pylori 26695]
         (41 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223644.1|  putative [Helicobacter pylori J99]               22  2.8
ref|NP_224127.1|  putative TYPE II DNA MODIFICATION ENZYME (...    20  8.1
ref|NP_223397.1|  PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE [H...    20  8.1
ref|NP_223063.1|  putative [Helicobacter pylori J99]               20  8.1

>ref|NP_223644.1| putative [Helicobacter pylori J99]
          Length = 465

 Score = 21.9 bits (45), Expect = 2.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 10  KALKNQYGYLLKIKAQSLQAIELTNNRTQTN 40
           KA K +Y  L+ + A  +QA E  N R  ++
Sbjct: 405 KAYKERYDKLVSLSAAIIQAKEGGNERQNSS 435



>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
          [Helicobacter pylori J99]
          Length = 1252

 Score = 20.4 bits (41), Expect = 8.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 8  VSKALKNQYGY 18
          ++K LKN YGY
Sbjct: 52 INKFLKNAYGY 62



>ref|NP_223397.1| PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE [Helicobacter pylori J99]
          Length = 318

 Score = 20.4 bits (41), Expect = 8.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 1   MAFYDFLVSKALKN 14
           + F D++ SKALKN
Sbjct: 158 IVFRDYIRSKALKN 171



>ref|NP_223063.1| putative [Helicobacter pylori J99]
          Length = 207

 Score = 20.4 bits (41), Expect = 8.1
 Identities = 10/22 (45%), Positives = 11/22 (49%)

Query: 3  FYDFLVSKALKNQYGYLLKIKA 24
          FY     KAL  Q  Y LK K+
Sbjct: 58 FYQKEFKKALAQQIAYFLKDKS 79



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.320    0.132    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,339
Number of Sequences: 1491
Number of extensions: 949
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 41
length of database: 494,079
effective HSP length: 17
effective length of query: 24
effective length of database: 468,732
effective search space: 11249568
effective search space used: 11249568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)