BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645890|ref|NP_208068.1| hypothetical protein
[Helicobacter pylori 26695]
(94 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223915.1| putative [Helicobacter pylori J99] 40 1e-05
ref|NP_223386.1| putative [Helicobacter pylori J99] 27 0.055
ref|NP_224204.1| putative [Helicobacter pylori J99] 26 0.12
ref|NP_223527.1| catalase [Helicobacter pylori J99] 26 0.16
ref|NP_223101.1| putative [Helicobacter pylori J99] 25 0.27
ref|NP_224040.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacte... 25 0.36
ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [... 25 0.36
ref|NP_223515.1| putative [Helicobacter pylori J99] 25 0.36
ref|NP_223176.1| putative [Helicobacter pylori J99] 25 0.36
ref|NP_223149.1| putative [Helicobacter pylori J99] 25 0.36
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 25 0.36
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 24 0.61
ref|NP_223876.1| CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN [... 23 0.80
ref|NP_224198.1| putative REGULATORY PROTEIN [Helicobacter ... 23 1.0
ref|NP_223040.1| putative [Helicobacter pylori J99] 23 1.0
ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobact... 23 1.4
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 22 1.8
ref|NP_223158.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 22 2.3
ref|NP_223731.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223541.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_222948.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_222941.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_222921.1| putative transporter [Helicobacter pylori ... 22 2.3
ref|NP_224073.1| putative motility protein [Helicobacter py... 22 3.0
ref|NP_222796.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 21 4.0
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 21 4.0
ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter ... 21 4.0
ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 21 5.2
ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl... 21 5.2
ref|NP_223618.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 21 5.2
ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacte... 21 5.2
ref|NP_223713.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_223357.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_223252.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_222894.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_222761.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [He... 20 6.8
ref|NP_222733.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_224057.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 20 8.8
ref|NP_224037.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_223759.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_222957.1| ABC transporter, permease [Helicobacter py... 20 8.8
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 39.7 bits (91), Expect = 1e-05
Identities = 33/116 (28%), Positives = 50/116 (42%), Gaps = 28/116 (24%)
Query: 7 NKNASHLTHEMKKEHGGLLEASKKAEMQPIFKALWGIAQ----EEKEGYK---------- 52
N+ + +T MK H L E +KA M+P ++ L I E K+ K
Sbjct: 8 NEKKNTITRRMKIAHNSLPETDRKAHMEPKWRELADIRSKMFAESKKQLKERGIQLKEKS 67
Query: 53 --QAAEGYKKALEAKEKMDKIVNTLKAINHD------------NNTIDIEPEDEKD 94
Q E +++ E E+ ++ L I + ++TIDIEPEDEKD
Sbjct: 68 KAQQQESFEREKELMEEEFQVQRELLEIYYGYPTQKNKPGIKYDDTIDIEPEDEKD 123
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 27.3 bits (59), Expect = 0.055
Identities = 21/88 (23%), Positives = 41/88 (45%), Gaps = 6/88 (6%)
Query: 3 KKDKNKNASHLTHEMKKEHGGLLEASKKAEMQPIFKALWGIAQEEKEGYKQAAEGYKKAL 62
+K K + SH ++ K+E L+ + + + + +A E +E + E KK
Sbjct: 488 EKTKREMESHFNNQ-KQEILALINDETRFK-----QTCFPMALELEETIQACEESVKKTQ 541
Query: 63 EAKEKMDKIVNTLKAINHDNNTIDIEPE 90
E + ++K + T + + ID+EPE
Sbjct: 542 ECAQGLEKWIQTGEDFIKGEDIIDVEPE 569
>ref|NP_224204.1| putative [Helicobacter pylori J99]
Length = 140
Score = 26.2 bits (56), Expect = 0.12
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 42 GIAQEEKEGYKQAAEGYKKALEAKEKMDKIVNTLKAINHDNNTIDIE 88
G + E E Y+ AE K L+AKE + I T HD I ++
Sbjct: 13 GFLRAEGEHYEIIAELSKAFLKAKEVLTAINKTCIETGHDRTQIRLQ 59
>ref|NP_223527.1| catalase [Helicobacter pylori J99]
Length = 505
Score = 25.8 bits (55), Expect = 0.16
Identities = 15/32 (46%), Positives = 20/32 (61%), Gaps = 4/32 (12%)
Query: 43 IAQEEKEGYKQA----AEGYKKALEAKEKMDK 70
I ++ E +K+A AEG KKALE +KM K
Sbjct: 460 IVDKQLEHFKKADPKYAEGVKKALEKHQKMMK 491
>ref|NP_223101.1| putative [Helicobacter pylori J99]
Length = 347
Score = 25.0 bits (53), Expect = 0.27
Identities = 10/47 (21%), Positives = 26/47 (55%)
Query: 5 DKNKNASHLTHEMKKEHGGLLEASKKAEMQPIFKALWGIAQEEKEGY 51
D N+ A+ + +E K++ +LE+ ++P+ + + + + +GY
Sbjct: 112 DTNRCATKIVYEFLKKYYAILESKNTLWLEPLVEMVNSVDIWDTQGY 158
>ref|NP_224040.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacter pylori J99]
Length = 271
Score = 24.6 bits (52), Expect = 0.36
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 52 KQAAEGYKKALEAKEKMDKIVNTLKAINHDNNTIDIEPED 91
K + KK++ KEK+DK+++ L N + E +D
Sbjct: 221 KTLSNNLKKSVSYKEKLDKVLDFLALENQPTSVRASEVKD 260
>ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori
J99]
Length = 328
Score = 24.6 bits (52), Expect = 0.36
Identities = 15/58 (25%), Positives = 24/58 (40%)
Query: 13 LTHEMKKEHGGLLEASKKAEMQPIFKALWGIAQEEKEGYKQAAEGYKKALEAKEKMDK 70
+T+ + E L KK F L + EEK + + YK+A E ++ K
Sbjct: 11 VTNSKELEEARLNALGKKGVFADKFNQLKNLNGEEKNAFAKEIHHYKQAFEKAFELKK 68
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 24.6 bits (52), Expect = 0.36
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 18 KKEHGGLLEASKKAEMQPIFKALWGIAQEEKEGYKQAAEGYKKALEAKEK 67
K+E L E KKA+ + + A+E +E ++ E +KALE +K
Sbjct: 492 KEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEMNKK 541
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 24.6 bits (52), Expect = 0.36
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 18 KKEHGGLLEASKKAEMQPIFKALWGIAQEEKEGYKQAAEGYKKALEAKEK 67
K+E L E KKA+ + + A+E +E ++ E +KALE +K
Sbjct: 401 KEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEMNKK 450
>ref|NP_223149.1| putative [Helicobacter pylori J99]
Length = 282
Score = 24.6 bits (52), Expect = 0.36
Identities = 17/57 (29%), Positives = 30/57 (51%), Gaps = 4/57 (7%)
Query: 11 SHLTHEMKKEHGGLLEASKKAEMQPIFKALWGIAQEEKEGYKQAAEGYKKALEAKEK 67
+HLT ++ K LLE K E+ P+F+ + +K+G A + + L+A +K
Sbjct: 35 THLTLKIAK----LLECEKHFEIIPVFENIPAFYDLKKQGVFWAMKDFLWLLKAIKK 87
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 24.6 bits (52), Expect = 0.36
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 2/63 (3%)
Query: 25 LEASKKAEMQPIFKALWGIAQEEKEGYKQAAEGYKKALEAKEKMDKIVNTLKAINHDNNT 84
L K A + +F+ L I + +G+ +E Y LE KI+ L+ N D
Sbjct: 17 LVGGKNASIGEMFQELVPIGIKVPDGFAITSEAYWYLLEQGGAKQKIIELLE--NVDATE 74
Query: 85 IDI 87
ID+
Sbjct: 75 IDV 77
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 23.9 bits (50), Expect = 0.61
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 1 MDKKDKNKNASHLTHEMKKEHGGLLEASKKAEMQPIFKALW------GIAQEEKEGYKQA 54
++ K K + + ++KKE L+ KKA + W IA ++ Y
Sbjct: 201 VEYKMKKSPSIFVAFDLKKEGLEKLKV-KKASLVIWTTTPWTLYANVAIALKKDAVYALT 259
Query: 55 AEGYKKALEAKEKMDKIVNTLKAINHDNNTIDIE 88
+GY A EK+ + AI H+ N+ D+E
Sbjct: 260 QKGYLVAKALHEKLAALGVVDNAITHEFNSNDLE 293
>ref|NP_223876.1| CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN [Helicobacter pylori J99]
Length = 375
Score = 23.5 bits (49), Expect = 0.80
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
Query: 72 VNTLKAINH-----DNNTIDIEPEDEK 93
V+T K I H D NT+D +P DEK
Sbjct: 157 VSTPKIITHQRATFDFNTLDYKPFDEK 183
>ref|NP_224198.1| putative REGULATORY PROTEIN [Helicobacter pylori J99]
Length = 374
Score = 23.1 bits (48), Expect = 1.0
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Query: 48 KEGYKQAAEGYKKALEAKEKMDKIVNTLKAINHDNNTIDIEPEDEK 93
K YKQ E Y A+ + K+ N +KA + + ++ ED+K
Sbjct: 158 KRLYKQTGEWYLVAMAYNYGLRKVQNAIKAAGTSDIKVLLD-EDKK 202
>ref|NP_223040.1| putative [Helicobacter pylori J99]
Length = 293
Score = 23.1 bits (48), Expect = 1.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 8 KNASHLTHEMKKEHGGLLEASKKAEMQPIFKALWGIAQEEKEGYKQAAEG 57
KNA H H + E GL+ A K + KAL+ + ++ K+ Y A G
Sbjct: 110 KNA-HPAHRLDYETSGLVLAGKTLQSTKDLKALF-MQKKVKKTYLALAHG 157
>ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobacter pylori J99]
Length = 374
Score = 22.7 bits (47), Expect = 1.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 1 MDKKDKNKNASHLTHEMKKE 20
+DKKD + ASH+ E+ KE
Sbjct: 21 LDKKDASSIASHIHLEVIKE 40
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 22.3 bits (46), Expect = 1.8
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 46 EEKEGY-KQAAEGYKKALEAKEKMDKIVNTLKAINHDNNTID 86
E+ E + +Q EG+ AL K+ + ++ +++DN T D
Sbjct: 139 EDTEAHQRQLNEGFLSALNNKQLEELSAFIVQCLSYDNYTSD 180
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 22.3 bits (46), Expect = 1.8
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 43 IAQEEKEGYKQAAEG-------YKKALEAKEKMDK 70
I +E G KQA+E Y+KAL+ +K+D+
Sbjct: 13 IIEELTNGVKQASEEIKAKATKYEKALQELQKIDE 47
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 21.9 bits (45), Expect = 2.3
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 38 KALWGIAQ--EEKEGYKQAAEGYKKAL 62
+AL+ +A+ +E YKQA YK+ L
Sbjct: 272 EALYYVAKALDENNNYKQAVRYYKRIL 298
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 21.9 bits (45), Expect = 2.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 45 QEEKEGYKQAAEGYKKALEAKEKMDKIVNTL 75
+ EKE + + +KK L ++K NTL
Sbjct: 142 ESEKESIQNSLHQWKKQLAETNHLNKEYNTL 172
>ref|NP_223541.1| putative [Helicobacter pylori J99]
Length = 271
Score = 21.9 bits (45), Expect = 2.3
Identities = 10/15 (66%), Positives = 11/15 (72%)
Query: 58 YKKALEAKEKMDKIV 72
Y+KAL AKE KIV
Sbjct: 209 YQKALNAKEVAQKIV 223
>ref|NP_222948.1| putative [Helicobacter pylori J99]
Length = 94
Score = 21.9 bits (45), Expect = 2.3
Identities = 15/57 (26%), Positives = 28/57 (48%), Gaps = 4/57 (7%)
Query: 24 LLEASKKAEMQPIFKALWGIAQEE----KEGYKQAAEGYKKALEAKEKMDKIVNTLK 76
+ ASKK + + + L +A E KE ++ E + KAL E++ + + + K
Sbjct: 22 IFHASKKLSKKELERLLELLALLETFIEKEDLEERFESFAKALRMDEELQQKIESRK 78
>ref|NP_222941.1| putative [Helicobacter pylori J99]
Length = 355
Score = 21.9 bits (45), Expect = 2.3
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 42 GIAQEEKEG----YKQAAEGYKKALEAKEK 67
GI E +G YK+A E YK A +A ++
Sbjct: 66 GIIYENGQGTRIDYKKALEYYKTACQADDR 95
>ref|NP_222921.1| putative transporter [Helicobacter pylori J99]
Length = 548
Score = 21.9 bits (45), Expect = 2.3
Identities = 8/22 (36%), Positives = 13/22 (58%)
Query: 4 KDKNKNASHLTHEMKKEHGGLL 25
K+ NA + E+ K HGG++
Sbjct: 190 KENASNAFYQKEEITKAHGGIM 211
>ref|NP_224073.1| putative motility protein [Helicobacter pylori J99]
Length = 195
Score = 21.6 bits (44), Expect = 3.0
Identities = 15/54 (27%), Positives = 24/54 (43%)
Query: 19 KEHGGLLEASKKAEMQPIFKALWGIAQEEKEGYKQAAEGYKKALEAKEKMDKIV 72
+EH ++S + A+ QE+KE K E +KK + K M + V
Sbjct: 58 REHEEEQDSSLNTALPEDKTAIEAKEQEQKEKRKHWYELFKKKPKPKSSMGEFV 111
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 21.6 bits (44), Expect = 3.0
Identities = 10/35 (28%), Positives = 18/35 (50%)
Query: 60 KALEAKEKMDKIVNTLKAINHDNNTIDIEPEDEKD 94
KA+E ++K+D +N L D + E + + D
Sbjct: 351 KAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQAQVD 385
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter
pylori J99]
Length = 815
Score = 21.2 bits (43), Expect = 4.0
Identities = 17/63 (26%), Positives = 28/63 (43%), Gaps = 5/63 (7%)
Query: 36 IFKALWGI----AQEEKEGYKQAAEGYKKALEAKEKMDKI-VNTLKAINHDNNTIDIEPE 90
IF +L G A+EE++ K+ K A+ + K+ K N++N T E
Sbjct: 14 IFLSLLGTFELEAKEEEKEEKKTERNKDKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKE 73
Query: 91 DEK 93
E+
Sbjct: 74 LER 76
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
J99]
Length = 605
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 7 NKNASHLTHEMKKEHGGLLEASKKAEMQPIFK 38
+K+ +H + ++ + LLEAS+ + + IF+
Sbjct: 449 DKSENHDSSDLSYQDSKLLEASQDGKPRGIFR 480
>ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter pylori J99]
Length = 941
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/26 (34%), Positives = 12/26 (45%)
Query: 60 KALEAKEKMDKIVNTLKAINHDNNTI 85
K + + K NTL + HD TI
Sbjct: 525 KLINTLRNLQKKGNTLIVVEHDKETI 550
Score = 21.2 bits (43), Expect = 4.0
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 70 KIVNTLKAINHDNNTIDIEPEDEK 93
K++NTL+ + NT+ + D++
Sbjct: 525 KLINTLRNLQKKGNTLIVVEHDKE 548
>ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 624
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 62 LEAKEKMDKIVNTLKAINHD 81
+ K K + N KA+NHD
Sbjct: 594 ISLKNKKRQFENVKKALNHD 613
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
Length = 552
Score = 20.8 bits (42), Expect = 5.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 51 YKQAAEGYKKALEAKEKMDKIVNTLKAINHD 81
YK+ E Y KA+ E+ ++ ++KA D
Sbjct: 243 YKEGDEVYVKAIAYDEEKRRLSLSIKATIED 273
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 20.8 bits (42), Expect = 5.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 43 IAQEEKEGYKQAAEGYKKALEAK 65
+AQ+EKE + E K+ LE K
Sbjct: 303 LAQKEKEKHLNDLEDQKQILENK 325
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/32 (34%), Positives = 18/32 (55%), Gaps = 2/32 (6%)
Query: 42 GIAQEEKEGYKQAAEGYKKALEAKE--KMDKI 71
G+++ EK+ + E K+A E K+ K D I
Sbjct: 410 GVSESEKQEIENKIEERKRAKEQKDFLKADSI 441
>ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacter pylori J99]
Length = 560
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 40 LWGIAQEEKEGYKQAAEGYKKALEAKEKMDKIVNTLKAINHDNNTIDIEPED 91
LW ++K + A + Y+ + K + N D + PED
Sbjct: 39 LWRYISDKKTSLENAKKAYELTQNKNSALQKAMQEKGVENSDKSPDAKMPED 90
>ref|NP_223713.1| putative [Helicobacter pylori J99]
Length = 75
Score = 20.4 bits (41), Expect = 6.8
Identities = 12/32 (37%), Positives = 17/32 (52%), Gaps = 1/32 (3%)
Query: 63 EAKEKMDKIVNTLKAINHDNNTIDIEPEDEKD 94
E EK+ K L A+ N T++ + E EKD
Sbjct: 16 ELIEKIQKQEEELSALRQANTTLNAQNE-EKD 46
>ref|NP_223357.1| putative [Helicobacter pylori J99]
Length = 342
Score = 20.4 bits (41), Expect = 6.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 23 GLLEASKKAEMQPIFKAL 40
GL+EA + ++ IFK L
Sbjct: 180 GLMEAQENLSLKNIFKTL 197
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 20.4 bits (41), Expect = 6.8
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 70 KIVNTLKAINHDNNTIDI 87
KI++T+KA + D T D+
Sbjct: 505 KIIDTIKAQSEDKFTKDV 522
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 20.4 bits (41), Expect = 6.8
Identities = 11/30 (36%), Positives = 13/30 (42%)
Query: 2 DKKDKNKNASHLTHEMKKEHGGLLEASKKA 31
DK+ A H E K + E SKKA
Sbjct: 163 DKEAHKDKAKHAAKEPKVKKEARKEVSKKA 192
Score = 20.0 bits (40), Expect = 8.8
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 65 KEKMDKIVNTLKAINHDNN 83
++K+DK+V+ +K +N+
Sbjct: 87 EDKLDKVVDNIKKQESENS 105
>ref|NP_222761.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [Helicobacter pylori J99]
Length = 310
Score = 20.4 bits (41), Expect = 6.8
Identities = 12/27 (44%), Positives = 16/27 (58%), Gaps = 1/27 (3%)
Query: 38 KAL-WGIAQEEKEGYKQAAEGYKKALE 63
KAL W + ++G K+A E Y K LE
Sbjct: 283 KALKWELEIPLEQGIKEAYEYYLKLLE 309
>ref|NP_222733.1| putative [Helicobacter pylori J99]
Length = 350
Score = 20.4 bits (41), Expect = 6.8
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 44 AQEEKEGYKQAAEGYKKALEAKEKMDKIVN 73
+QE+KE + A GY K L+ + + +I N
Sbjct: 302 SQEDKELAGRIALGYAKTLKNQAYLIQIGN 331
>ref|NP_224057.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 133
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 2 DKKDKNKNASHLTHEMKKEHGGLLEASKKAEMQPIFKAL 40
DK+ +N H + K+ +L+ KK+ + K +
Sbjct: 72 DKEISFENLKHKVSTLAKDTPIVLQGDKKSNLDNFIKVV 110
>ref|NP_224037.1| putative [Helicobacter pylori J99]
Length = 206
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/27 (33%), Positives = 16/27 (58%)
Query: 32 EMQPIFKALWGIAQEEKEGYKQAAEGY 58
+++P F L + E ++G Q+A GY
Sbjct: 98 KLEPGFYYLDSFSVETQKGILQSAPGY 124
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 20.0 bits (40), Expect = 8.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 7 NKNASHLTHEMKKEHGGLLEASKK 30
N NA ++ E+KK L+E + +
Sbjct: 118 NANAENIKSEIKKLENQLIETTTR 141
>ref|NP_222957.1| ABC transporter, permease [Helicobacter pylori J99]
Length = 338
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 24 LLEASKKAEMQPIFKALWGIAQEEKEGYKQAAEGYKKAL 62
+++ A P FK L G + ++ + GY+ +L
Sbjct: 103 IMDLDSPAPTPPSFKHLLGTDDQARDVLARLVYGYRVSL 141
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.304 0.125 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,779
Number of Sequences: 1491
Number of extensions: 4486
Number of successful extensions: 48
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of query: 94
length of database: 494,079
effective HSP length: 70
effective length of query: 24
effective length of database: 389,709
effective search space: 9353016
effective search space used: 9353016
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.6 bits)
S2: 40 (20.0 bits)