BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645894|ref|NP_208073.1| anthranilate synthase
component II (trpD) [Helicobacter pylori 26695]
(194 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223920.1| ANTHRANILATE SYNTHASE COMPONENT II [Helico... 371 e-105
ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99] 67 2e-13
ref|NP_223876.1| CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN [... 50 4e-08
ref|NP_223042.1| CTP SYNTHASE [Helicobacter pylori J99] 32 0.009
ref|NP_224046.1| putative PROTEASE IV [Helicobacter pylori ... 29 0.095
ref|NP_222748.1| putative [Helicobacter pylori J99] 25 1.0
ref|NP_224149.1| putative [Helicobacter pylori J99] 25 1.4
ref|NP_223483.1| putative lipopolysaccharide biosynthesis p... 24 2.3
ref|NP_223277.1| putative chemotaxis protein [Helicobacter ... 24 3.0
ref|NP_223109.1| putative [Helicobacter pylori J99] 24 3.0
ref|NP_223207.1| cag island protein [Helicobacter pylori J99] 23 5.2
ref|NP_223628.1| ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE ... 23 6.8
ref|NP_223688.1| putative PARALOG OF HpaA [Helicobacter pyl... 22 8.9
ref|NP_223515.1| putative [Helicobacter pylori J99] 22 8.9
>ref|NP_223920.1| ANTHRANILATE SYNTHASE COMPONENT II [Helicobacter pylori J99]
Length = 194
Score = 371 bits (953), Expect = e-105
Identities = 187/193 (96%), Positives = 188/193 (96%)
Query: 1 MKIFFIDNFDSFSYNLVYELECLGYEVAVYQNDIDPSYLMDLMNEESKTPLLFISPGPGN 60
MKIFFIDNFDSFSYNLVYELECLGYEVAVYQNDIDPSYLM LMNEE KTPLLFISPGPGN
Sbjct: 1 MKIFFIDNFDSFSYNLVYELECLGYEVAVYQNDIDPSYLMGLMNEEPKTPLLFISPGPGN 60
Query: 61 PNSSGNLLKIIAMAKKKFPILGICLGLQALAQSYGAKIIRSKEIVHGKATAIALKKHAVF 120
PNSSGNLLKIIAMAKKKFPILG+CLGLQALAQSYGAKIIRSKEIVHGKAT IALKKHAVF
Sbjct: 61 PNSSGNLLKIIAMAKKKFPILGVCLGLQALAQSYGAKIIRSKEIVHGKATTIALKKHAVF 120
Query: 121 KGLGESMVVGRYHSLMASGLPKNLEVIAEHDNIPMAIVNEEDKILAYQFHPESIMTLQGR 180
KGLGESMVVGRYHSLMASGLPKNLEVIAEHDNIPMAIVNEEDKILAYQFHPESIMTLQGR
Sbjct: 121 KGLGESMVVGRYHSLMASGLPKNLEVIAEHDNIPMAIVNEEDKILAYQFHPESIMTLQGR 180
Query: 181 ALLEQSVGFLEGL 193
ALLEQSVGFL L
Sbjct: 181 ALLEQSVGFLREL 193
>ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99]
Length = 508
Score = 67.4 bits (163), Expect = 2e-13
Identities = 44/142 (30%), Positives = 65/142 (44%), Gaps = 2/142 (1%)
Query: 44 NEESKTPL-LFISPGPGNPNSSGNLLKIIAMAKKKFPILGICLGLQALAQSYGAKIIRSK 102
N + K P L +S GP + + + PILGIC G+Q L +G + +
Sbjct: 37 NIQKKAPKGLILSGGPASVYAKDAYKPSEKIFDLNLPILGICYGMQYLVDFFGGVVAYAN 96
Query: 103 EIVHGKATAIALKKHAVFKGLGESMVVGRYHSLMASGLPKNLEVIAEHDNIPMAIVNEED 162
E GKA ++ +F+G+ +V H LPK +A+ N P + E D
Sbjct: 97 EQEFGKAILEIVQNSVIFEGVKIKSLVWMSHMDKVIELPKGFTTLAKSPNSPYCAI-ESD 155
Query: 163 KILAYQFHPESIMTLQGRALLE 184
KI QFHPE I + +G +LE
Sbjct: 156 KIFGLQFHPEVIQSEEGGKILE 177
>ref|NP_223876.1| CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN [Helicobacter pylori J99]
Length = 375
Score = 50.1 bits (118), Expect = 4e-08
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 20/187 (10%)
Query: 15 NLVYELECLGYEVAVYQNDIDPSYLMDLMNEESKTPLLFISPGPGNPNS-SGNLLKIIAM 73
N++ EL+ +G + +Y + + L+ E+ + +F+S GPG+P S + +I +
Sbjct: 199 NILNELQNVGLKALIYPHHTKANELIKAY-EKKEISGIFLSNGPGDPLSLQQEIGEIKRL 257
Query: 74 AKKKFPILGICLGLQALAQSYGAKIIRSKEIVHGKATAIA-LKKHAVFKGLGESMVVGRY 132
K P+ GICLG Q L+ + G + K HG + L+ +AV + +
Sbjct: 258 INAKIPMFGICLGHQLLSIAQGYPTYKLKFGHHGSNHPVKNLETNAV-------EITAQN 310
Query: 133 HSLMASGLPKNLEVIAE------HDNIPMAIVNEEDKILAYQFHPESIM-TLQGRALLEQ 185
H+ +P+ +E IA DN + + I++ Q HPES + + ++
Sbjct: 311 HNYC---VPEEIEEIATITHRNLFDNTIEGVRYKNAPIISVQHHPESSPGPKESHYIFKE 367
Query: 186 SVGFLEG 192
VG LEG
Sbjct: 368 FVGLLEG 374
>ref|NP_223042.1| CTP SYNTHASE [Helicobacter pylori J99]
Length = 538
Score = 32.3 bits (72), Expect = 0.009
Identities = 26/93 (27%), Positives = 40/93 (42%), Gaps = 6/93 (6%)
Query: 1 MKIFFIDNFDSFSYNLVYELECLGYEVAVYQNDIDPSYLMDLMNEESKTPL-----LFIS 55
+KI F+ + S + +E L + A ++ +L D N KT L + +
Sbjct: 291 VKIGFVGKYLSLKESYKSLIEALIHAGAHLDTQVNIEWL-DSENFNEKTDLEGVDAILVP 349
Query: 56 PGPGNPNSSGNLLKIIAMAKKKFPILGICLGLQ 88
G G G + I +K P LGICLG+Q
Sbjct: 350 GGFGERGIEGKICAIQRARLEKLPFLGICLGMQ 382
>ref|NP_224046.1| putative PROTEASE IV [Helicobacter pylori J99]
Length = 292
Score = 28.9 bits (63), Expect = 0.095
Identities = 21/62 (33%), Positives = 32/62 (50%), Gaps = 3/62 (4%)
Query: 51 LLFISPGPGNPNSSGNLLKIIAMAKKKFPILGICLGLQALAQSYGAKIIRSKEIVHGKAT 110
LL SPG G ++S L + IA K+K P+L G+ A Y +++ E+ KA+
Sbjct: 83 LLIDSPG-GAVSASVELSEKIADLKQKMPVLAYARGVMASGSYYAG--MQASEVYASKAS 139
Query: 111 AI 112
I
Sbjct: 140 LI 141
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 25.4 bits (54), Expect = 1.0
Identities = 20/67 (29%), Positives = 26/67 (37%), Gaps = 10/67 (14%)
Query: 5 FIDNFDSFSYNLVYELECLGYEVAVYQ----------NDIDPSYLMDLMNEESKTPLLFI 54
FI +F L+ E GY+ + N ID SYL D E +T L +
Sbjct: 107 FIKDFTQDERELLVEAYKSGYKASQLDKVSKKWRDDPNPIDASYLADAFLREYRTIALKL 166
Query: 55 SPGPGNP 61
S G P
Sbjct: 167 STALGKP 173
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 25.0 bits (53), Expect = 1.4
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 58 PGNPNSSGNLLKIIAMAKKKF--------PILGICLGLQALAQSYGAKIIRSKEIVHGKA 109
P NP+ S +K + +++ +LG +AL+Q+ KEI GK
Sbjct: 184 PQNPDPSSQWVKDFSEEERELYTHSLANLTLLGGTKNTKALSQALNQDFKEKKEIYMGKT 243
Query: 110 TAIALKKHAVFKGLGESMVVGRYHSLMASGLPKNLE 145
A+ KK FK + + +PKNLE
Sbjct: 244 IALDNKK--TFKVMTCYDMTKNDVCRYTEWMPKNLE 277
>ref|NP_223483.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 273
Score = 24.3 bits (51), Expect = 2.3
Identities = 14/43 (32%), Positives = 20/43 (45%)
Query: 113 ALKKHAVFKGLGESMVVGRYHSLMASGLPKNLEVIAEHDNIPM 155
ALK HA F LGE ++SL + N + D+I +
Sbjct: 88 ALKYHAKFMSLGELGCYASHYSLWQKCIELNEAICILEDDITL 130
>ref|NP_223277.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 313
Score = 23.9 bits (50), Expect = 3.0
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 83 ICLGLQAL--AQSYGAKIIRSKEIVH--GKATAIALKKHAVFKGL----GESMV---VGR 131
+C L A AQ YG I + +EI+H G+ T I V G GES+ V R
Sbjct: 20 LCFRLDAEKDAQLYGMNIFKIREIIHYDGEVTEILGGSDGVMLGFLSVRGESIPLVDVKR 79
Query: 132 YHSLMASGLPKNLEVIAEHDNIPMAIV 158
+ A+ ++L+ + D+ + IV
Sbjct: 80 WLHYNANDPSRDLKECSVKDDHNLVIV 106
>ref|NP_223109.1| putative [Helicobacter pylori J99]
Length = 294
Score = 23.9 bits (50), Expect = 3.0
Identities = 11/24 (45%), Positives = 14/24 (57%)
Query: 11 SFSYNLVYELECLGYEVAVYQNDI 34
+ S NL Y L GY+V V+ DI
Sbjct: 43 NISANLAYSLYKKGYKVGVFDADI 66
>ref|NP_223207.1| cag island protein [Helicobacter pylori J99]
Length = 370
Score = 23.1 bits (48), Expect = 5.2
Identities = 20/93 (21%), Positives = 41/93 (43%), Gaps = 4/93 (4%)
Query: 86 GLQALAQSYGAKIIRSKEIVHGKATAIALKKHAVFKGLGES----MVVGRYHSLMASGLP 141
G QA+ +S A + + + +A + G + +VVG + M + +
Sbjct: 3 GTQAIYESSSAGFLSQVSSIISSTSGVAGPFAGIVAGAMTAAIIPIVVGFTNPQMTAIMT 62
Query: 142 KNLEVIAEHDNIPMAIVNEEDKILAYQFHPESI 174
+ + IAE ++PM N++ L F+ +S+
Sbjct: 63 QYNQSIAEAVSVPMKAANQQYNQLYQGFNDQSM 95
>ref|NP_223628.1| ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE
[Helicobacter pylori J99]
Length = 439
Score = 22.7 bits (47), Expect = 6.8
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 149 EHDNIPMAIVNEEDKILAYQFHPESIMTL 177
EH N P+ + + I Y F+ + M L
Sbjct: 24 EHQNFPIIPIKKAQGIYLYDFNDNAYMDL 52
>ref|NP_223688.1| putative PARALOG OF HpaA [Helicobacter pylori J99]
Length = 249
Score = 22.3 bits (46), Expect = 8.9
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 114 LKKHAVFKGLGESMVVGRYHSLMASGLPKNL------EVIAEHDNIPM----------AI 157
+KK ++ LG + G +++ +A G+P E + H + P+ +
Sbjct: 1 MKKGSLAIVLGSLLASGTFYTALADGMPMKQQHNNMGESVELHFHYPIKGKQEPKNNHLV 60
Query: 158 VNEEDKILAYQFHPESIMTLQGRALLEQSVGFLE 191
V + KI A + PE+ ++L Q FLE
Sbjct: 61 VLIDPKIEANKVIPENYQKEFEKSLFLQLSNFLE 94
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 22.3 bits (46), Expect = 8.9
Identities = 10/21 (47%), Positives = 12/21 (56%)
Query: 15 NLVYELECLGYEVAVYQNDID 35
N +Y LE GY + V ND D
Sbjct: 326 NKLYSLEKRGYVIEVDLNDFD 346
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.139 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,928
Number of Sequences: 1491
Number of extensions: 8828
Number of successful extensions: 31
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 14
length of query: 194
length of database: 494,079
effective HSP length: 73
effective length of query: 121
effective length of database: 385,236
effective search space: 46613556
effective search space used: 46613556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)