BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644759|ref|NP_206929.1| hypothetical protein
[Helicobacter pylori 26695]
(141 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222839.1| putative [Helicobacter pylori J99] 264 6e-73
ref|NP_223375.1| putative [Helicobacter pylori J99] 77 2e-16
ref|NP_223376.1| putative [Helicobacter pylori J99] 68 1e-13
ref|NP_223560.1| putative [Helicobacter pylori J99] 28 0.075
ref|NP_223889.1| putative [Helicobacter pylori J99] 27 0.28
ref|NP_223646.1| putative [Helicobacter pylori J99] 26 0.37
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 26 0.37
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 25 0.63
ref|NP_223494.1| putative [Helicobacter pylori J99] 25 0.83
ref|NP_223025.1| putative [Helicobacter pylori J99] 25 0.83
ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylor... 25 1.1
ref|NP_223625.1| putative [Helicobacter pylori J99] 24 1.8
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 23 3.1
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 23 3.1
ref|NP_222890.1| putative [Helicobacter pylori J99] 23 4.1
ref|NP_223988.1| putative [Helicobacter pylori J99] 22 5.4
ref|NP_223714.1| putative [Helicobacter pylori J99] 22 5.4
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 22 7.0
ref|NP_223483.1| putative lipopolysaccharide biosynthesis p... 22 7.0
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 22 9.1
ref|NP_223289.1| putative [Helicobacter pylori J99] 22 9.1
ref|NP_223141.1| GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYS... 22 9.1
ref|NP_223014.1| putative [Helicobacter pylori J99] 22 9.1
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 264 bits (675), Expect = 6e-73
Identities = 131/143 (91%), Positives = 135/143 (93%), Gaps = 2/143 (1%)
Query: 1 MKKLAVSLLFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKE 60
MKKLA SLLFTGTFLGLFLNASDFKSMD+KQLLEQAGKVAPSEVPEFR EVNKRL MKE
Sbjct: 1 MKKLAFSLLFTGTFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRTEVNKRLEAMKE 60
Query: 61 EDRKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKKTMTMKEYREEGLDLHDCA 120
E+R+ YKADFKKAMDKNLASLSQEDRNKRKKEILE IANKKKTMTMKEYREEGLDLHDCA
Sbjct: 61 EERQKYKADFKKAMDKNLASLSQEDRNKRKKEILEVIANKKKTMTMKEYREEGLDLHDCA 120
Query: 121 CEGPFHDHERK--KGKKPSHHKH 141
CEGPFHDHE+K KGKKPSHHKH
Sbjct: 121 CEGPFHDHEKKGQKGKKPSHHKH 143
>ref|NP_223375.1| putative [Helicobacter pylori J99]
Length = 140
Score = 76.6 bits (187), Expect = 2e-16
Identities = 41/120 (34%), Positives = 73/120 (60%), Gaps = 4/120 (3%)
Query: 2 KKLAVSLLFTGTFLGL-FLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKE 60
+ LA LL LGL L A DF + +++LL+ AG + +E ++R EV+KRL +
Sbjct: 3 RSLAFCLL---ALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKALSA 59
Query: 61 EDRKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKKTMTMKEYREEGLDLHDCA 120
ED K ++A+F + KNL+ +S+ED K ++E+ + + K K ++ +E + +GL++ C+
Sbjct: 60 EDAKKFRANFSRIARKNLSKMSEEDFKKMREEVRKELEEKTKGLSAEEIKAKGLNVSVCS 119
>ref|NP_223376.1| putative [Helicobacter pylori J99]
Length = 152
Score = 67.8 bits (164), Expect = 1e-13
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 16/139 (11%)
Query: 3 KLAVSLLFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKEED 62
K A+ +L G L + LNA DF D+ L + AG VAP ++ ++ E+ KR+ M E+
Sbjct: 2 KKALKILSVGALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDK 61
Query: 63 RKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKKTMTMKEYREEGLDLHDCACE 122
RK + + KN ++ D R+K I EA+ KK M E ++ L C
Sbjct: 62 RKAFHKQLHEYATKNTDKMTVADFEARQKAIKEAL--KKGNM---EDMDDDFGLRSC--- 113
Query: 123 GPFHDHERKKGKKPSHHKH 141
K GKK H KH
Sbjct: 114 --------KHGKKHKHDKH 124
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 28.5 bits (62), Expect = 0.075
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 20 NASDFKSMDDKQLLEQ-----AGKVAPSEVPEFRAEVNKRLAVMKEEDRKNYKADFKKAM 74
N D K++ D Q L Q A + + PE + +N + + + + K
Sbjct: 177 NVKDPKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASDHLALKTTQASINHTLTKND 236
Query: 75 DKNLASLSQ-----EDRNKRKKEILEAIANKKKTMTMKE 108
KN A+LS E + + KE N+KKT +KE
Sbjct: 237 AKNTANLSSVLQSLEKKEPQNKEHANPPNNEKKTPPLKE 275
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 26.6 bits (57), Expect = 0.28
Identities = 16/60 (26%), Positives = 30/60 (49%), Gaps = 4/60 (6%)
Query: 46 EFRAEVNKRLAVMKEEDRKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKKTMT 105
E + E+ + + K+E ++ K + K+ + K QE NK K+ + + N +KT T
Sbjct: 93 EIKQEIKQEI---KQEIKQEIKQEIKQEI-KQETKQEQEKENKPKQNSVSPVQNDQKTPT 148
>ref|NP_223646.1| putative [Helicobacter pylori J99]
Length = 150
Score = 26.2 bits (56), Expect = 0.37
Identities = 19/87 (21%), Positives = 43/87 (48%), Gaps = 6/87 (6%)
Query: 33 LEQAGKVAPSEVPEFRAEVNKRLAVMKEEDRKNYKADFKKAMDKNLASLSQEDR-----N 87
LE + ++ + ++ V ++ + + E + K D K +D +LA +S++ N
Sbjct: 15 LENSIEITKKNIAKYTRLVEQKPSYPRLEYLQALKWDHKTLID-DLAKMSKDRNYKPAFN 73
Query: 88 KRKKEILEAIANKKKTMTMKEYREEGL 114
+ KE+L+ + +K+ E E+G+
Sbjct: 74 PKSKEVLKNLNAEKRASLENEREEQGV 100
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 26.2 bits (56), Expect = 0.37
Identities = 23/72 (31%), Positives = 33/72 (44%), Gaps = 5/72 (6%)
Query: 36 AGKVAPSEVPEFRAE---VNKRLAVMKEEDRKNYKADFKKAMDKNLASLSQED-RNKRKK 91
A + AP E E N +L +EE K A+ K+ + LA +D N++K
Sbjct: 273 ATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAE-KEKQETELAKYKLKDLENQKKL 331
Query: 92 EILEAIANKKKT 103
+ LEA KK T
Sbjct: 332 KALEAELKKKNT 343
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 25.4 bits (54), Expect = 0.63
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 30 KQLLEQAG---KVAPSEVPEFRAEVNKRLA--VMKEEDRKNYKADFKKAMDKNLASLSQE 84
++LLE+A K V R E K+ ++ E RK + + KK++ L +S+
Sbjct: 1192 RKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRA 1251
Query: 85 DRNKRKKEILEAIANKKKTMTMKEYREEGLDLHDC 119
K K+E + + + + K+ +++ + DC
Sbjct: 1252 RNEKEKQECEKLLTPEARKFLEKQRQQKDKAIKDC 1286
>ref|NP_223494.1| putative [Helicobacter pylori J99]
Length = 205
Score = 25.0 bits (53), Expect = 0.83
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 67 KADFKKAMDKNLASLSQEDRNKRKKEILEAI 97
K F K K + QE+ NK+++E L A+
Sbjct: 22 KHPFSKQTPKTKERIRQEEANKKREETLNAL 52
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 25.0 bits (53), Expect = 0.83
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 34 EQAGKVAPSEVPEFRAEVNKRLAVMKEEDRKNYKADFKKAMDKNLASL------------ 81
E +V EV E + EV ++ K+E +N + + K D+ S+
Sbjct: 176 EAQEEVKKEEVKEMQEEVKEK---QKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKEL 232
Query: 82 -SQEDRNKRKKEILEAIANKKKTMTMKEYREE 112
+QE+ K+E E K++T +KE ++E
Sbjct: 233 ETQEELETPKEETQEQEPIKEETQEIKEEKQE 264
>ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylori J99]
Length = 369
Score = 24.6 bits (52), Expect = 1.1
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 55 LAVMKEEDRKNYKADFKKAM-----DKNLASLSQEDRNKRKKEILEAIANKKKTMTMKEY 109
L V K +++ K ++K D+N E++ K E + ++KK Y
Sbjct: 9 LEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLGDEKKRALYDRY 68
Query: 110 REEGLD 115
++GL+
Sbjct: 69 GKKGLN 74
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 23.9 bits (50), Expect = 1.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 25 KSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKEEDRKNYKADFKKA 73
KS +K +E+A E+ E +E + + KE+D+ Y A A
Sbjct: 251 KSQIEKSQIEEAQTQKSQEMKEAASEQAIKKPLEKEKDKPMYLAQINSA 299
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 23.1 bits (48), Expect = 3.1
Identities = 22/94 (23%), Positives = 36/94 (37%), Gaps = 14/94 (14%)
Query: 22 SDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKEEDRKNYKADFKKAMDKNLASL 81
S +K D +LLE G PS + + KR + +D+K+ +
Sbjct: 466 SAYKEADFVKLLENKGIGRPSTYASYLPTLVKREYISISQDKKHI--------------I 511
Query: 82 SQEDRNKRKKEILEAIANKKKTMTMKEYREEGLD 115
+ + KR E+ E +T + EE LD
Sbjct: 512 TPTHKGKRVVEVFENAYQFIIDLTYTKQMEEVLD 545
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 23.1 bits (48), Expect = 3.1
Identities = 11/28 (39%), Positives = 16/28 (56%)
Query: 11 TGTFLGLFLNASDFKSMDDKQLLEQAGK 38
TG F G+ +D K+ +QL +QA K
Sbjct: 801 TGDFSGVEQALADLKNFSKEQLAQQAQK 828
>ref|NP_222890.1| putative [Helicobacter pylori J99]
Length = 236
Score = 22.7 bits (47), Expect = 4.1
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 65 NYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANK 100
N K F KA DK + +L ++ ++ K +LE NK
Sbjct: 186 NAKESFNKATDKGVEALKEKAKD-LPKNMLEPKHNK 220
>ref|NP_223988.1| putative [Helicobacter pylori J99]
Length = 290
Score = 22.3 bits (46), Expect = 5.4
Identities = 16/48 (33%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Query: 85 DRNKRKKEILEAIANKKKTMTMKEYREEGLDLHDCACE-GPFHDHERK 131
+++K K+E LE KK T ++ D HD A + G + ERK
Sbjct: 86 NKDKEKRESLELDQFAKKDNTYYFMEQKMRDDHDSAKKRGQIDNFERK 133
>ref|NP_223714.1| putative [Helicobacter pylori J99]
Length = 248
Score = 22.3 bits (46), Expect = 5.4
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 9 LFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKR---LAVMKEEDRKN 65
+F T L +FL + +DDK+ ++ + P +P + +++ L M + K+
Sbjct: 5 IFKITLLLVFLFLRNAVGLDDKKAAPKSVQNTPKNLPPIQLRLDQAYEDLIKMLDNMGKS 64
Query: 66 YKADFKKAMDKNLASLSQED 85
+ +F K K + S+E+
Sbjct: 65 TQYEFPKI--KEILEQSEEE 82
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 21.9 bits (45), Expect = 7.0
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 8 LLFTGTFLGLFLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKEEDRKNYK 67
LLF + L A DF +D ++ ++ S +++ + + +D + YK
Sbjct: 97 LLFLRQHMNLLKRACDFSVLDSDEVKTLCKQLKISNFRASISQIKNGMMDLSVQDSECYK 156
Query: 68 A 68
A
Sbjct: 157 A 157
>ref|NP_223483.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 273
Score = 21.9 bits (45), Expect = 7.0
Identities = 11/24 (45%), Positives = 16/24 (65%)
Query: 92 EILEAIANKKKTMTMKEYREEGLD 115
E+ EAI + +T+KE +EGLD
Sbjct: 116 ELNEAICILEDDITLKEDFKEGLD 139
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 21.6 bits (44), Expect = 9.1
Identities = 10/22 (45%), Positives = 13/22 (58%)
Query: 72 KAMDKNLASLSQEDRNKRKKEI 93
+AMDK A +R KR K+I
Sbjct: 102 EAMDKERALFFIRERKKRSKDI 123
>ref|NP_223289.1| putative [Helicobacter pylori J99]
Length = 352
Score = 21.6 bits (44), Expect = 9.1
Identities = 11/41 (26%), Positives = 17/41 (40%)
Query: 101 KKTMTMKEYREEGLDLHDCACEGPFHDHERKKGKKPSHHKH 141
+K + + + + LDL AC+ F R G H H
Sbjct: 294 QKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLH 334
>ref|NP_223141.1| GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYSTEM PROTEIN
[Helicobacter pylori J99]
Length = 416
Score = 21.6 bits (44), Expect = 9.1
Identities = 8/24 (33%), Positives = 12/24 (49%)
Query: 6 VSLLFTGTFLGLFLNASDFKSMDD 29
+ + TGT L F +DF + D
Sbjct: 32 IGYICTGTVLAAFFKINDFNLLSD 55
>ref|NP_223014.1| putative [Helicobacter pylori J99]
Length = 294
Score = 21.6 bits (44), Expect = 9.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 68 ADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKK 102
+DF K+ D ++ + S E NK+ + I K K
Sbjct: 89 SDFAKSSDTHIVACSIEKNNKKLYDSAYIIPPKGK 123
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,989
Number of Sequences: 1491
Number of extensions: 6479
Number of successful extensions: 33
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 23
length of query: 141
length of database: 494,079
effective HSP length: 69
effective length of query: 72
effective length of database: 391,200
effective search space: 28166400
effective search space used: 28166400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 44 (21.6 bits)