BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645899|ref|NP_208078.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(182 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223924.1| putative [Helicobacter pylori J99] 348 4e-98
ref|NP_224202.1| abc transporter, ATP-binding protein [Heli... 26 0.73
ref|NP_223614.1| putative [Helicobacter pylori J99] 24 2.1
ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter py... 23 3.6
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 23 6.2
ref|NP_223632.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_223432.1| URIDYLATE KINASE [Helicobacter pylori J99] 23 6.2
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 23 6.2
ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEI... 22 8.1
>ref|NP_223924.1| putative [Helicobacter pylori J99]
Length = 182
Score = 348 bits (894), Expect = 4e-98
Identities = 172/182 (94%), Positives = 179/182 (97%)
Query: 1 MKKALISTLFGVSLAFAKPYTIDKANSSVWFEVKHFTFNETRGAFDNFDGKIDLEPNTKM 60
MKKAL+ TL GVSLAFA PYTIDKANSSVW+EVKHFTFNETRGAFDNFDGKIDLEPNTK+
Sbjct: 1 MKKALMFTLLGVSLAFATPYTIDKANSSVWYEVKHFTFNETRGAFDNFDGKIDLEPNTKV 60
Query: 61 LSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDGKIYGDLTLRGVT 120
LSVFEGNID+KSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDGKI+GDLTLRGVT
Sbjct: 61 LSVFEGNIDLKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDGKIHGDLTLRGVT 120
Query: 121 KPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIELKLEAY 180
KPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFS+AVVGDEVKIE+KLEAY
Sbjct: 121 KPVVLEAKIQAPLQNPMNKKEFMVLQAEGKINRKDFGIGKTFSNAVVGDEVKIEIKLEAY 180
Query: 181 AQ 182
AQ
Sbjct: 181 AQ 182
>ref|NP_224202.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 327
Score = 25.8 bits (55), Expect = 0.73
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 11 GVSLAFAKPYTIDKANSSVWFEVKHFTFNETRGAFDN 47
GV+L KP + KA + +HF + F+N
Sbjct: 64 GVNLLNLKPKELQKARQKIGMIFQHFNLLSAKNVFEN 100
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 24.3 bits (51), Expect = 2.1
Identities = 11/56 (19%), Positives = 27/56 (47%)
Query: 30 WFEVKHFTFNETRGAFDNFDGKIDLEPNTKMLSVFEGNIDVKSVNTRDRKRDNHLK 85
W++++ + R DN + + L+ + K LS+ + ++ N +D + L+
Sbjct: 163 WYKLRQEEIQKHRDLMDNDNRLLQLDYSLKNLSILKRFKEINEKNYQDHLNNEKLQ 218
>ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99]
Length = 138
Score = 23.5 bits (49), Expect = 3.6
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 61 LSVFEGNIDVKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDG 108
LS+F G ++ +N D + HLK DF + K ++ YE G
Sbjct: 47 LSLFNGVLE--KINEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIG 92
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 22.7 bits (47), Expect = 6.2
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
Query: 100 FKMTKYEDGKIY-GDLTLRGVTKPVVLEAKIQAPLQNPMNKKEF 142
++ TK+ G I+ GD+ G P++ E ++ LQ P N F
Sbjct: 287 YEQTKF--GLIFNGDMAEEGQDFPILNEVNVKRTLQFPPNSIYF 328
>ref|NP_223632.1| putative [Helicobacter pylori J99]
Length = 411
Score = 22.7 bits (47), Expect = 6.2
Identities = 15/40 (37%), Positives = 24/40 (59%), Gaps = 4/40 (10%)
Query: 107 DGKIYGDLTLRGVTKPVV---LEAKIQAPLQNPMNKKEFM 143
+G IY L +G+ K V L K +AP+++ M+ KEF+
Sbjct: 132 NGTIYAKLC-KGLGKLFVNKFLNPKSEAPMKDFMSSKEFV 170
>ref|NP_223432.1| URIDYLATE KINASE [Helicobacter pylori J99]
Length = 240
Score = 22.7 bits (47), Expect = 6.2
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 18/74 (24%)
Query: 49 DGKIDLEPN----TKMLSVFE------GNIDVKSVNTRDRKRDNHL--------KTADFF 90
DG D +PN K L G+I+V +DN L K +
Sbjct: 167 DGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLL 226
Query: 91 DVVKYPKGSFKMTK 104
V+K+ +G F M K
Sbjct: 227 QVIKHQQGVFSMVK 240
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 22.7 bits (47), Expect = 6.2
Identities = 18/71 (25%), Positives = 30/71 (41%), Gaps = 7/71 (9%)
Query: 68 IDVKSVNTRDRKRDNHLKTA--DFFDVVKYPKGSFKMTKYEDGKIYGDLTLRGVTKPVVL 125
+D+K T K LK D+ K +FKMT + GK+Y + + +
Sbjct: 5 VDLKKFVTELGKTQKELKNVIEQAKDIGLELKTNFKMTPEQAGKLY-----KYIVDGIKE 59
Query: 126 EAKIQAPLQNP 136
+ + P +NP
Sbjct: 60 QIQANQPTKNP 70
>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR [Helicobacter
pylori J99]
Length = 277
Score = 22.3 bits (46), Expect = 8.1
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Query: 138 NKKEFMVLQAEGKINRKDFGIGKTFSDAVVGDEVKIE-LKLEAYAQ 182
+K F + ++G D I K + ++GDE KIE + +EA A+
Sbjct: 51 DKPPFGSVDSKGNYQGYDVVIAKRMALDLLGDENKIEFIPVEASAR 96
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,130
Number of Sequences: 1491
Number of extensions: 8671
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 9
length of query: 182
length of database: 494,079
effective HSP length: 72
effective length of query: 110
effective length of database: 386,727
effective search space: 42539970
effective search space used: 42539970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)