BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645901|ref|NP_208080.1| hypothetical protein
[Helicobacter pylori 26695]
(132 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223926.1| putative [Helicobacter pylori J99] 240 1e-65
ref|NP_223341.1| putative [Helicobacter pylori J99] 142 4e-36
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 26 0.32
ref|NP_223487.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT A [Heli... 25 0.72
ref|NP_223125.1| amino acid permease [Helicobacter pylori J99] 25 0.72
ref|NP_223156.1| Outer membrane protein [Helicobacter pylor... 25 0.94
ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter p... 22 6.1
ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 22 6.1
ref|NP_223654.1| putative [Helicobacter pylori J99] 22 8.0
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 22 8.0
ref|NP_222938.1| motility protein [Helicobacter pylori J99] 22 8.0
>ref|NP_223926.1| putative [Helicobacter pylori J99]
Length = 117
Score = 240 bits (612), Expect = 1e-65
Identities = 113/117 (96%), Positives = 115/117 (97%)
Query: 16 MKGFVMSGLKAFSCVVVLCGAMANTAIAGPKIEARGEFGRFWGGAVGGAIGGGVGGAVGG 75
MKGFVMSGL+ FSCVVVLCGAMAN AIAGPKIEARGEFGRFWGGAVGGAIGGGVGGA+GG
Sbjct: 1 MKGFVMSGLRTFSCVVVLCGAMANVAIAGPKIEARGEFGRFWGGAVGGAIGGGVGGAMGG 60
Query: 76 AVGGPAGGWAGRLVGGSVGREFGREIGDRVEDYIRGVDREPQAPREPTYDRHFVYDR 132
AVGGPAGGWAGRLVGGSVGREFGREIGDRVEDYIRGVDREPQAPREPTYDRHFVYDR
Sbjct: 61 AVGGPAGGWAGRLVGGSVGREFGREIGDRVEDYIRGVDREPQAPREPTYDRHFVYDR 117
>ref|NP_223341.1| putative [Helicobacter pylori J99]
Length = 116
Score = 142 bits (357), Expect = 4e-36
Identities = 74/120 (61%), Positives = 83/120 (68%), Gaps = 21/120 (17%)
Query: 11 LNLNFMKGFVMSGLKAFSCVVVLCGAMANTAIAGPKIEARGEFGRFWGGAVGGAIGGGVG 70
+NL+FMKGFVMSGL+ FSCVVVLCGAM N A+AGPKIEARGE G+F GGAVG +G +G
Sbjct: 1 MNLHFMKGFVMSGLRTFSCVVVLCGAMVNVAVAGPKIEARGELGKFVGGAVGNFVGDKMG 60
Query: 71 GAVGGAVGGPAGGWAGRLVGGSVGREFGREIGDRVEDYIRGVDR-----EPQAPREPTYD 125
G VGGA+GG G E+GDRVEDYIRGVDR EPQ PREP D
Sbjct: 61 GFVGGAIGG----------------YIGSEVGDRVEDYIRGVDREPQNKEPQTPREPIRD 104
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 26.2 bits (56), Expect = 0.32
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 91 GSVGREFGREIGDRVEDYIRGVDREPQA 118
G VG+EFG++I +ED + +E +A
Sbjct: 1146 GLVGKEFGKQIASMLEDKTKDFAKELRA 1173
>ref|NP_223487.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT A [Helicobacter pylori J99]
Length = 453
Score = 25.0 bits (53), Expect = 0.72
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 11 LNLNFMKGFVMSGLKAFSCVVVLCGAMANTAIAGPKIEARGEFGRFWGGAVGGAIGGGVG 70
L+ N M GF +S + F+ G+ ++ G R + GG+ GG+ G
Sbjct: 85 LHQNGMAGFGLSNMDEFAM-----GSTTESSCYGITKNPRDK-NIVPGGSSGGSAAAVAG 138
Query: 71 GAVGGAVGGPAGG 83
G A+G GG
Sbjct: 139 GLTVAALGSDTGG 151
Score = 22.7 bits (47), Expect = 3.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 74 GGAVGGPAGGWAGRLVGGSVGREFGREI 101
GG+ GG A AG L ++G + G I
Sbjct: 126 GGSSGGSAAAVAGGLTVAALGSDTGGSI 153
Score = 21.9 bits (45), Expect = 6.1
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 66 GGGVGGAVGGAVGGPAGGWAGRLVGGSV 93
GG GG+ GG G GGS+
Sbjct: 126 GGSSGGSAAAVAGGLTVAALGSDTGGSI 153
Score = 21.6 bits (44), Expect = 8.0
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 70 GGAVGGAVGGPAGGWAGRLVGGSVG 94
GG+ GG+ AGG +G G
Sbjct: 126 GGSSGGSAAAVAGGLTVAALGSDTG 150
>ref|NP_223125.1| amino acid permease [Helicobacter pylori J99]
Length = 475
Score = 25.0 bits (53), Expect = 0.72
Identities = 14/37 (37%), Positives = 18/37 (47%), Gaps = 2/37 (5%)
Query: 57 WGGAVGGAIGGGVGGAVGGAVGGPAGGWAGRLVGGSV 93
+GGA+G + G GG + A GP G GG V
Sbjct: 27 FGGAIGTGLFVGTGGNIASA--GPLGTLIAYCFGGLV 61
>ref|NP_223156.1| Outer membrane protein [Helicobacter pylori J99]
Length = 528
Score = 24.6 bits (52), Expect = 0.94
Identities = 11/24 (45%), Positives = 13/24 (53%)
Query: 46 KIEARGEFGRFWGGAVGGAIGGGV 69
K+E GR W VGG +GG V
Sbjct: 69 KLEGSVHLGRGWTVNVGGVLGGQV 92
>ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter pylori J99]
Length = 459
Score = 21.9 bits (45), Expect = 6.1
Identities = 13/31 (41%), Positives = 15/31 (47%)
Query: 32 VLCGAMANTAIAGPKIEARGEFGRFWGGAVG 62
VL G AN I G ++ RG G AVG
Sbjct: 227 VLDGLKANPNIKGVVLDLRGNPGGLLNQAVG 257
>ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 454
Score = 21.9 bits (45), Expect = 6.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 44 GPKIEARGEFGRFWGGAVG 62
G + G+ G F+GG VG
Sbjct: 15 GVEFRKLGDIGEFYGGLVG 33
>ref|NP_223654.1| putative [Helicobacter pylori J99]
Length = 421
Score = 21.6 bits (44), Expect = 8.0
Identities = 16/47 (34%), Positives = 17/47 (36%)
Query: 44 GPKIEARGEFGRFWGGAVGGAIGGGVGGAVGGAVGGPAGGWAGRLVG 90
G E + G GGAV G V V A GG AG G
Sbjct: 329 GAVTEMMQKIGMTIGGAVFGGSAVMVANQVKQAYQSAGGGLAGLQAG 375
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 21.6 bits (44), Expect = 8.0
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 39 NTAIAGPKIEARGEFGRFWGGAVGGAIG-GGV 69
NTAI K R + G FW G VGG G GG+
Sbjct: 1945 NTAI---KDLIRQKLG-FWTGLVGGLAGLGGI 1972
>ref|NP_222938.1| motility protein [Helicobacter pylori J99]
Length = 215
Score = 21.6 bits (44), Expect = 8.0
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 74 GGAVGGPAGGWAGRLVGGSVGREFGREIGDRV---EDYIRGVDREPQAPR 120
GG+ G G ++G + G G IG+++ +Y + R ++P+
Sbjct: 116 GGSNEGSGFGLGSAILGSAAGAILGSYIGNKLFNNPNYQQNAQRTYKSPQ 165
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.146 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,258
Number of Sequences: 1491
Number of extensions: 5229
Number of successful extensions: 48
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 16
length of query: 132
length of database: 494,079
effective HSP length: 69
effective length of query: 63
effective length of database: 391,200
effective search space: 24645600
effective search space used: 24645600
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 44 (21.6 bits)