BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645902|ref|NP_208081.1| hypothetical protein
[Helicobacter pylori 26695]
(161 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223927.1| putative [Helicobacter pylori J99] 324 6e-91
ref|NP_223340.1| putative [Helicobacter pylori J99] 221 1e-59
ref|NP_222957.1| ABC transporter, permease [Helicobacter py... 26 0.60
ref|NP_224109.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_222739.1| putative chemotaxis protein [Helicobacter ... 24 1.7
ref|NP_223890.1| putative Peptide ABC transporter, ATP-bind... 24 2.3
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 24 2.3
ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter... 23 3.0
ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99] 23 3.9
ref|NP_223971.1| putative [Helicobacter pylori J99] 22 6.6
ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cyt... 22 8.7
ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99] 22 8.7
>ref|NP_223927.1| putative [Helicobacter pylori J99]
Length = 161
Score = 324 bits (831), Expect = 6e-91
Identities = 154/161 (95%), Positives = 159/161 (98%)
Query: 1 MNVKNRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAAL 60
MN+K RLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAAL
Sbjct: 1 MNIKKRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAAL 60
Query: 61 LSNLLFDPRGRDCYKSFQVRYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTIPFIA 120
LSNLLFDPRGRDCYKSFQVRYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLT+PFIA
Sbjct: 61 LSNLLFDPRGRDCYKSFQVRYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTMPFIA 120
Query: 121 AIHEVSAYYGHPSNFLIEGLVILGLVCVFGICSRLCAKLGW 161
AIHE+SAY GHPSNFL+EGLV+LGLVCVFGICSRLCAKLGW
Sbjct: 121 AIHEISAYCGHPSNFLVEGLVMLGLVCVFGICSRLCAKLGW 161
>ref|NP_223340.1| putative [Helicobacter pylori J99]
Length = 168
Score = 221 bits (562), Expect = 1e-59
Identities = 114/161 (70%), Positives = 130/161 (79%), Gaps = 7/161 (4%)
Query: 4 KNRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAALLSN 63
K RLSD EY+WA+ALVY CISI RIFYDI+GSASD +FDPK SYY+WLVGLIAALLSN
Sbjct: 12 KERLSDLEYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVWLVGLIAALLSN 71
Query: 64 LLFDPRGRDC-YKSFQV--RYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTIPFIA 120
LLF+P+GR Y + +P+F KAIFKARFFGAFY+AVLG+RLRDFYVMLLTIPFI
Sbjct: 72 LLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLGARLRDFYVMLLTIPFII 131
Query: 121 AIHEVSAYYGHPSNFLIEGLVILGLVCVFGICSRLCAKLGW 161
A+HE+SAY GHPSN L+EGLVILG F +LCAK GW
Sbjct: 132 AMHEISAYCGHPSNLLVEGLVILG----FQGFLKLCAKWGW 168
>ref|NP_222957.1| ABC transporter, permease [Helicobacter pylori J99]
Length = 338
Score = 25.8 bits (55), Expect = 0.60
Identities = 20/78 (25%), Positives = 36/78 (45%), Gaps = 8/78 (10%)
Query: 48 SYYMWLVGLIAALLSNLLFDPRGRDCYKSFQVRYPRFLKAIFKARFFGAFYNA------- 100
S Y+++ L +LL+ L + R YK + +P F K + F G F+
Sbjct: 21 SLYLFIALLALSLLAPLWVNDRPLFIYKDNKAYFPMF-KNYAEVEFGGDFFTPTDYNDPY 79
Query: 101 VLGSRLRDFYVMLLTIPF 118
V + L+D +++ IP+
Sbjct: 80 VQNTLLKDAFIIHALIPY 97
>ref|NP_224109.1| putative [Helicobacter pylori J99]
Length = 355
Score = 24.6 bits (52), Expect = 1.3
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 105 RLRDFYVMLLTIPFIAAIHEVSAYYGHPSNFLIEGLVILGL 145
++R F + +PF V Y PS E L +LGL
Sbjct: 262 KVRSFLYVFAILPFFVPFLSVLIAYFSPSLARYENLALLGL 302
>ref|NP_222739.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 321
Score = 24.3 bits (51), Expect = 1.7
Identities = 12/28 (42%), Positives = 17/28 (59%), Gaps = 6/28 (21%)
Query: 122 IHEVSAYYG------HPSNFLIEGLVIL 143
I EV Y+G H +N L+EGL+I+
Sbjct: 41 IREVVKYHGNLTIISHENNSLVEGLIII 68
>ref|NP_223890.1| putative Peptide ABC transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 348
Score = 23.9 bits (50), Expect = 2.3
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 49 YYMWLVGLIAALLSNLL---FDPR 69
Y L+GL+A+L+S+LL DPR
Sbjct: 319 YIFTLLGLVASLISDLLCVVIDPR 342
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 23.9 bits (50), Expect = 2.3
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 34 IDGSAS-DSIFDPKNSYYMWLVGLIAALLSNLLFDP 68
I GSA ++I N+ MWL L AA N LF P
Sbjct: 2791 IQGSAGLNAIKSAGNNSIMWLSELFAAKGGNPLFAP 2826
>ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter pylori J99]
Length = 796
Score = 23.5 bits (49), Expect = 3.0
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 34 IDGSASDSIFDPKNSYYMWLVGLIAALLSNLL--FDPRGRDCYKSFQV 79
+ G+ ++ F SY W+ GL + L FD RD + F++
Sbjct: 535 VGGNETEQRFTESKSYMEWIKGLYEKSDGHTLKSFDQFWRDGFVEFEI 582
>ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99]
Length = 508
Score = 23.1 bits (48), Expect = 3.9
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 94 FGAFYNAVLGSRLRDFYVMLLTIPFIAAIHEV 125
FG+ Y ++ RLR+ + +PF ++ +
Sbjct: 7 FGSQYTQLIARRLRESGIYAEIVPFFESVENI 38
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 22.3 bits (46), Expect = 6.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 59 ALLSNLLFDPRGRDCYKSFQ 78
AL+ N+ DP G +K+F+
Sbjct: 355 ALIKNIRLDPHGFPSFKNFK 374
>ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
[Helicobacter pylori J99]
Length = 412
Score = 21.9 bits (45), Expect = 8.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 45 PKNSYYMWLVGLIAALLSNLL 65
PKN ++W +G+I L +L
Sbjct: 34 PKNINFLWAMGVILLTLLGVL 54
>ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99]
Length = 551
Score = 21.9 bits (45), Expect = 8.7
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 100 AVLGSRLRDFYVMLLTIPFIAAIHEVSAYYGHPSNFLIEGLVILGLVCVF 149
+V G L++ +LTI + + VS Y G S + L GL F
Sbjct: 393 SVFGETLKEMRYPILTIGLVLSFAYVSNYSGISSTLAL-ALTHTGLAFTF 441
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.332 0.146 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,842
Number of Sequences: 1491
Number of extensions: 6737
Number of successful extensions: 28
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 12
length of query: 161
length of database: 494,079
effective HSP length: 71
effective length of query: 90
effective length of database: 388,218
effective search space: 34939620
effective search space used: 34939620
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)