BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645905|ref|NP_208084.1| ribosomal protein L17
(rpl17) [Helicobacter pylori 26695]
(116 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223930.1| 50S RIBOSOMAL PROTEIN L17 [Helicobacter py... 231 3e-63
ref|NP_224044.1| putative [Helicobacter pylori J99] 24 1.3
ref|NP_223243.1| putative [Helicobacter pylori J99] 23 2.2
ref|NP_223121.1| putative [Helicobacter pylori J99] 23 2.2
ref|NP_223560.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223128.1| putative Short chain dehydrogenase [Helico... 23 2.8
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 22 3.7
ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Hel... 22 6.3
ref|NP_222748.1| putative [Helicobacter pylori J99] 21 8.2
>ref|NP_223930.1| 50S RIBOSOMAL PROTEIN L17 [Helicobacter pylori J99]
Length = 116
Score = 231 bits (590), Expect = 3e-63
Identities = 115/116 (99%), Positives = 115/116 (99%)
Query: 1 MRHKHGYRKLGRTSSHRKALLKNLAIALIEHNKIETGIYKAKELRSYIEKLTTAARVGDF 60
MRHKHGYRKLGRTSSHRKALLKNLAIALIEHNKIETGIYKAKELRSYIEKLTT ARVGDF
Sbjct: 1 MRHKHGYRKLGRTSSHRKALLKNLAIALIEHNKIETGIYKAKELRSYIEKLTTVARVGDF 60
Query: 61 NAHRHVFAYLQNKEATHKLVTEIAPKYAQRNGGYTRIQRTTFRRGDASTLATIEFV 116
NAHRHVFAYLQNKEATHKLVTEIAPKYAQRNGGYTRIQRTTFRRGDASTLATIEFV
Sbjct: 61 NAHRHVFAYLQNKEATHKLVTEIAPKYAQRNGGYTRIQRTTFRRGDASTLATIEFV 116
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 23.9 bits (50), Expect = 1.3
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 11 GRTSSHRKALLK--NLAIALIEHNKIETGIYKAKELRSYIEKLTTAARVGDF-------- 60
G T + + LL NL ++ ++HN + I K +++++ L DF
Sbjct: 304 GGTGNLLRGLLNKANLYLSTLDHNDV--AIIKDLASKNHLKMLENQVFQFDFLNDDFFSD 361
Query: 61 NAHRHVFAYLQNKEATHKLVTEIAPKYAQRNGGYT 95
+ + L+++E KL+ I P YA+ T
Sbjct: 362 KTPKSLQEILKDEEKRKKLIIYINPPYAEATSAKT 396
Score = 21.6 bits (44), Expect = 6.3
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 55 ARVGDFNAHRHVFAYLQNKEATHKLVTEIAPKY 87
A+ GDF+ F L HKL T P Y
Sbjct: 21 AKRGDFDDLDKAFTQLLLTIGKHKLYTHHTPPY 53
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 23.1 bits (48), Expect = 2.2
Identities = 16/83 (19%), Positives = 40/83 (47%), Gaps = 9/83 (10%)
Query: 10 LGRTSSHRK--ALLKNLAIALIEHNKIETGIYKAKELRSYIEKLTTAARVGDFNAHRHVF 67
L T+ H K +++ L+ I++ ++ ++++ ++EK + + D N+ H++
Sbjct: 448 LENTNPHEKTFSMVMTLSNHAIKNVNLKAFGVPLEKIQQFVEKTPKSENLPDANSLGHIY 507
Query: 68 AYLQNKEATHKLVTEIAPKYAQR 90
Y K+V + K +Q+
Sbjct: 508 WY-------DKVVVDFIKKASQK 523
>ref|NP_223121.1| putative [Helicobacter pylori J99]
Length = 288
Score = 23.1 bits (48), Expect = 2.2
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 23/81 (28%)
Query: 18 KALLKNLAIALIEHNKIETG------------------IYKAKELRSYI-----EKLTTA 54
++LLK L IAL+E ++ G YK K+ +Y+ + + +
Sbjct: 101 RSLLKALKIALVEKYPLKKGAKIQGEHCFEYEADDIISFYKKKDPNNYVIASMDKDILYS 160
Query: 55 ARVGDFNAHRHVFAYLQNKEA 75
R FN + F + KEA
Sbjct: 161 NRGSHFNLKTNAFFNVSQKEA 181
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 22.7 bits (47), Expect = 2.8
Identities = 11/45 (24%), Positives = 27/45 (59%), Gaps = 1/45 (2%)
Query: 8 RKLGRTSSHRKALLKNLAIALIEH-NKIETGIYKAKELRSYIEKL 51
++LG+ + + KNL +++I H N ++T + ++L++ + L
Sbjct: 417 KELGKVEVTIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNAL 461
>ref|NP_223128.1| putative Short chain dehydrogenase [Helicobacter pylori J99]
Length = 262
Score = 22.7 bits (47), Expect = 2.8
Identities = 8/28 (28%), Positives = 16/28 (56%)
Query: 67 FAYLQNKEATHKLVTEIAPKYAQRNGGY 94
F Y +N E +K++ ++ KY+ + Y
Sbjct: 38 FTYNKNVEEANKIIEDVEQKYSIKAKAY 65
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 22.3 bits (46), Expect = 3.7
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 4 KHGYRKLGRTSSHRKALLKNLAIALIEHNKIETGIYKAKELRSYIEKLTTAARVGDFNAH 63
K Y K+ + ++ K KNL + H+ +K E KL ++ FN
Sbjct: 52 KKNYAKVLKIFAYSKRFYKNLELVFFNHSAFYYNQFKTGESLFIYGKLEQSS----FNQ- 106
Query: 64 RHVFAYLQNKEATHKLVTE 82
AY+ N T K++TE
Sbjct: 107 ----AYIIN---TPKILTE 118
>ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Helicobacter pylori J99]
Length = 363
Score = 21.6 bits (44), Expect = 6.3
Identities = 11/36 (30%), Positives = 21/36 (57%), Gaps = 3/36 (8%)
Query: 65 HVFAYLQNKEATHKLVTEIAP--KYAQRNGGYTRIQ 98
+ + YL+N+ H+LV I+P A+R+ + +Q
Sbjct: 186 NAYGYLKNENGVHRLV-RISPFDANAKRHTSFASVQ 220
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 21.2 bits (43), Expect = 8.2
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 68 AYLQNKEATHKLVTEIAPKYAQRNGGYTRIQRTTFRRGDAS 108
A Q KE + L+T++ + GY I + G+ S
Sbjct: 430 ALRQGKEVSKTLITKVLANTIDTDAGYCFISDLATQLGNIS 470
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.133 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,432
Number of Sequences: 1491
Number of extensions: 4279
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 10
length of query: 116
length of database: 494,079
effective HSP length: 67
effective length of query: 49
effective length of database: 394,182
effective search space: 19314918
effective search space used: 19314918
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 43 (21.2 bits)