BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645910|ref|NP_208089.1| ribosomal protein L36
(rpl36) [Helicobacter pylori 26695]
         (37 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223935.1|  50S RIBOSOMAL PROTEIN L36 [Helicobacter py...    79  3e-17
ref|NP_223816.1|  AMINO ACID ABC TRANSPORTER, BINDING PROTEI...    21  4.8

>ref|NP_223935.1| 50S RIBOSOMAL PROTEIN L36 [Helicobacter pylori J99]
          Length = 37

 Score = 78.6 bits (192), Expect = 3e-17
 Identities = 36/37 (97%), Positives = 36/37 (97%)

Query: 1  MKVRPSVKKMCDNCKIIKRRGVIRVICATPKHKQRQG 37
          MKVRPSVKKMCD CKIIKRRGVIRVICATPKHKQRQG
Sbjct: 1  MKVRPSVKKMCDKCKIIKRRGVIRVICATPKHKQRQG 37



>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR
          [Helicobacter pylori J99]
          Length = 277

 Score = 21.2 bits (43), Expect = 4.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 6  SVKKMCDNCKIIKRRGVIRV 25
          S K+  D  ++IK+RGV++V
Sbjct: 27 SHKEKKDALEVIKQRGVLKV 46



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.329    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,121
Number of Sequences: 1491
Number of extensions: 604
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 37
length of database: 494,079
effective HSP length: 13
effective length of query: 24
effective length of database: 474,696
effective search space: 11392704
effective search space used: 11392704
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 41 (20.4 bits)