BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645911|ref|NP_208090.1| translation initiation
factor EF-1 (infA) [Helicobacter pylori 26695]
(72 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223936.1| TRANSLATION INITIATION FACTOR IF-1 [Helico... 146 9e-38
ref|NP_222783.1| putative [Helicobacter pylori J99] 22 3.3
ref|NP_222875.1| putative [Helicobacter pylori J99] 21 4.3
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 21 5.6
ref|NP_223059.1| putative [Helicobacter pylori J99] 20 7.3
ref|NP_223856.1| putative role in outermembrane permeabilit... 20 9.6
ref|NP_223293.1| Hydrogenase, large subunit [Helicobacter p... 20 9.6
ref|NP_223056.1| transketolase [Helicobacter pylori J99] 20 9.6
>ref|NP_223936.1| TRANSLATION INITIATION FACTOR IF-1 [Helicobacter pylori J99]
Length = 72
Score = 146 bits (368), Expect = 9e-38
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MARDDVIEVDGKVIEALPNATFKVELDNKHVVLCRISGKMRMHYIRIALGDRVKLELTPY 60
MARDDVIEVDGKVIEALPNATFKVELDNKHVVLCRISGKMRMHYIRIALGDRVKLELTPY
Sbjct: 1 MARDDVIEVDGKVIEALPNATFKVELDNKHVVLCRISGKMRMHYIRIALGDRVKLELTPY 60
Query: 61 SLDKGRITFRYK 72
SLDKGRITFRYK
Sbjct: 61 SLDKGRITFRYK 72
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 21.6 bits (44), Expect = 3.3
Identities = 6/28 (21%), Positives = 16/28 (56%)
Query: 22 FKVELDNKHVVLCRISGKMRMHYIRIAL 49
FK+ + H ++C SG + +++ + +
Sbjct: 337 FKIGNEQNHTLICDHSGSGKSNFLHVLI 364
>ref|NP_222875.1| putative [Helicobacter pylori J99]
Length = 87
Score = 21.2 bits (43), Expect = 4.3
Identities = 10/59 (16%), Positives = 28/59 (46%), Gaps = 6/59 (10%)
Query: 4 DDVIEVDGKVIEALPNATF------KVELDNKHVVLCRISGKMRMHYIRIALGDRVKLE 56
++ +++ +++ P+ T ++E K+ + ++ HY+ GDR+ +E
Sbjct: 19 EEALQIYTNILKKTPDNTEALKQMKRLEKIQKNCAPFKHDALLKQHYLNFIKGDRLSVE 77
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 20.8 bits (42), Expect = 5.6
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 11 GKVIEALPNATFKVELDNKHVVLCRISGKMRMHYIRIALGDRVKLEL 57
GK+ + N FK++ N+H + + + I D+ K+ +
Sbjct: 304 GKMDFIVSNPPFKLDFSNEHAEISQNKNDFFLGVPNIPKNDKSKMPI 350
>ref|NP_223059.1| putative [Helicobacter pylori J99]
Length = 169
Score = 20.4 bits (41), Expect = 7.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 54 KLELTPYSLDKGRITFRYK 72
KLEL YSL K F Y+
Sbjct: 145 KLELDAYSLGKIVFNFAYQ 163
>ref|NP_223856.1| putative role in outermembrane permeability [Helicobacter pylori
J99]
Length = 766
Score = 20.0 bits (40), Expect = 9.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 45 IRIALGDRVKLELTPYSLDKGRITFR 70
IR+ + VKLEL + K +T+R
Sbjct: 736 IRVFENNYVKLELDFSPITKTNVTYR 761
>ref|NP_223293.1| Hydrogenase, large subunit [Helicobacter pylori J99]
Length = 578
Score = 20.0 bits (40), Expect = 9.6
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 27 DNKHVVLCRISGKMRMHYIRIALGDRVKLE 56
D K V L G+ HY + G+ V +E
Sbjct: 330 DTKEVQLHPYDGQTNPHYTGLKDGESVGIE 359
>ref|NP_223056.1| transketolase [Helicobacter pylori J99]
Length = 641
Score = 20.0 bits (40), Expect = 9.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 5 DVIEVDGKVIEALPNATFKVELDNKHVVL 33
+V+E DG +A+ NA + + +K +L
Sbjct: 214 EVLECDGHDYQAIHNALEEAKKSHKPTLL 242
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.325 0.143 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,693
Number of Sequences: 1491
Number of extensions: 2075
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 72
length of database: 494,079
effective HSP length: 48
effective length of query: 24
effective length of database: 422,511
effective search space: 10140264
effective search space used: 10140264
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 40 (20.0 bits)