BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645914|ref|NP_208093.1| ribosomal protein L15
(rpl15) [Helicobacter pylori 26695]
(135 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223939.1| 50S RIBOSOMAL PROTEIN L15 [Helicobacter py... 263 1e-72
ref|NP_224174.1| putative [Helicobacter pylori J99] 28 0.12
ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) ... 27 0.15
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 27 0.26
ref|NP_222987.1| QUEUINE TRNA-RIBOSYLTRANSFERASE [Helicobac... 24 1.7
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 23 2.9
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 23 2.9
ref|NP_223594.1| ALANINE RACEMASE [Helicobacter pylori J99] 22 4.9
ref|NP_223364.1| putative [Helicobacter pylori J99] 22 6.4
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 22 8.4
ref|NP_222975.1| putative [Helicobacter pylori J99] 22 8.4
>ref|NP_223939.1| 50S RIBOSOMAL PROTEIN L15 [Helicobacter pylori J99]
Length = 133
Score = 263 bits (673), Expect = 1e-72
Identities = 132/133 (99%), Positives = 133/133 (99%)
Query: 3 MGLENLKPAKGSVKKIKRVGRGQGSGMGKTATRGGKGQTARTGYKAKRGFEGGQQPLQRR 62
MGLENLKPAKGSVKKIKRVGRGQGSGMGKTATRGGKGQTARTGYKAKRGFEGGQQPLQRR
Sbjct: 1 MGLENLKPAKGSVKKIKRVGRGQGSGMGKTATRGGKGQTARTGYKAKRGFEGGQQPLQRR 60
Query: 63 LPKIGFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALHHFPLYIEGVKLIGKDAKNLAS 122
LPKIGFRTKDSHIYSINVEKNEAIK+LEEITFSSLRALHHFPLYIEGVKLIGKDAKNLAS
Sbjct: 61 LPKIGFRTKDSHIYSINVEKNEAIKSLEEITFSSLRALHHFPLYIEGVKLIGKDAKNLAS 120
Query: 123 KIKDERIKTSGQK 135
KIKDERIKTSGQK
Sbjct: 121 KIKDERIKTSGQK 133
>ref|NP_224174.1| putative [Helicobacter pylori J99]
Length = 312
Score = 27.7 bits (60), Expect = 0.12
Identities = 15/48 (31%), Positives = 25/48 (51%)
Query: 48 AKRGFEGGQQPLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEITFS 95
A +G+ GG L + GF+T +H+ I V+ E +K + I +S
Sbjct: 193 ASKGWNGGYGNLIKVFHPFGFKTYYAHLNKIVVKTGEFVKKGQLIGYS 240
>ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 433
Score = 27.3 bits (59), Expect = 0.15
Identities = 11/36 (30%), Positives = 21/36 (57%)
Query: 67 GFRTKDSHIYSINVEKNEAIKNLEEITFSSLRALHH 102
G+R +SH S++ E N+ +K ++E + + L H
Sbjct: 360 GYRALESHHASVHAEANDLVKAVQEDHVTDSKYLEH 395
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 26.6 bits (57), Expect = 0.26
Identities = 11/35 (31%), Positives = 21/35 (59%)
Query: 58 PLQRRLPKIGFRTKDSHIYSINVEKNEAIKNLEEI 92
P +RL + +SH Y+IN ++ +KN+++I
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQI 552
>ref|NP_222987.1| QUEUINE TRNA-RIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 371
Score = 23.9 bits (50), Expect = 1.7
Identities = 9/22 (40%), Positives = 16/22 (71%)
Query: 90 EEITFSSLRALHHFPLYIEGVK 111
+E+T++ L +LH+ Y+E VK
Sbjct: 323 KELTYARLASLHNLHFYLELVK 344
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 23.1 bits (48), Expect = 2.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 104 PLYIEGVKLIGKDAKNLASKIK 125
P+ E KLI KDAK + K K
Sbjct: 104 PMTTEQRKLIAKDAKAMGEKAK 125
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 23.1 bits (48), Expect = 2.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 59 LQRRLPKIGFRTKDSHIYSINVEKNEAIKN 88
LQ P +G TK+ H Y ++ N+ + N
Sbjct: 154 LQGSQPMLGANTKNLHGYDVSGANNKQVIN 183
>ref|NP_223594.1| ALANINE RACEMASE [Helicobacter pylori J99]
Length = 377
Score = 22.3 bits (46), Expect = 4.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 5 LENLKPAKGSVKKIKRVGRGQGSGMGK 31
L+N+ K + +IKRV +G+ G G+
Sbjct: 247 LKNVISLKARIVQIKRVKKGEFIGYGE 273
>ref|NP_223364.1| putative [Helicobacter pylori J99]
Length = 308
Score = 21.9 bits (45), Expect = 6.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 110 VKLIGKDAKNLASKIKDERIK 130
+KLIG D A +I ER+K
Sbjct: 49 LKLIGIDKDKFAQEIAKERLK 69
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 21.6 bits (44), Expect = 8.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 82 KNEAIKNLEEITFSSLRALHHFPLYI 107
+NEAI L + +L+ LH F +I
Sbjct: 662 ENEAIDELGSVLKEALKLLHPFMPFI 687
>ref|NP_222975.1| putative [Helicobacter pylori J99]
Length = 437
Score = 21.6 bits (44), Expect = 8.4
Identities = 14/53 (26%), Positives = 24/53 (44%), Gaps = 3/53 (5%)
Query: 59 LQRRLPKIGFRTKDSHI---YSINVEKNEAIKNLEEITFSSLRALHHFPLYIE 108
L + + G R H +S ++K I+ +E I F+S LH ++E
Sbjct: 190 LGQNVNNYGVRFSSEHAKVGFSDLLDKLSEIQGIERIRFTSPHPLHMNDAFLE 242
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.135 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,016
Number of Sequences: 1491
Number of extensions: 6107
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 11
length of query: 135
length of database: 494,079
effective HSP length: 69
effective length of query: 66
effective length of database: 391,200
effective search space: 25819200
effective search space used: 25819200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 44 (21.6 bits)