BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645915|ref|NP_208094.1| ribosomal protein S5 (rps5)
[Helicobacter pylori 26695]
(153 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223940.1| 30S RIBOSOMAL PROTEIN S5 [Helicobacter pyl... 299 3e-83
ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 28 0.086
ref|NP_222789.1| UREASE BETA SUBUNIT [Helicobacter pylori J99] 28 0.11
ref|NP_223177.1| putative Glycolate oxidase [Helicobacter p... 26 0.56
ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter... 23 3.6
ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pyl... 22 8.0
>ref|NP_223940.1| 30S RIBOSOMAL PROTEIN S5 [Helicobacter pylori J99]
Length = 153
Score = 299 bits (765), Expect = 3e-83
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MTERKGMEEINREEFQEVVVNIGRVTKVVKGGRRFRFNALVVVGNKNGLVGFGLGKAKEV 60
MTERKGMEEINREEFQEVVVNIGRVTKVVKGGRRFRFNALVVVGNKNGLVGFGLGKAKEV
Sbjct: 1 MTERKGMEEINREEFQEVVVNIGRVTKVVKGGRRFRFNALVVVGNKNGLVGFGLGKAKEV 60
Query: 61 PDAIKKAVDDAFKNLIHVTIKGTTIAHDIEHKYNASRILLKPASEGTGVIAGGSTRPIVE 120
PDAIKKAVDDAFKNLIHVTIKGTTIAHDIEHKYNASRILLKPASEGTGVIAGGSTRPIVE
Sbjct: 61 PDAIKKAVDDAFKNLIHVTIKGTTIAHDIEHKYNASRILLKPASEGTGVIAGGSTRPIVE 120
Query: 121 LAGIKDILTKSLGSNNPYNVVRATFDALAKIKA 153
LAGIKDILTKSLGSNNPYNVVRATFDALAKIKA
Sbjct: 121 LAGIKDILTKSLGSNNPYNVVRATFDALAKIKA 153
>ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 632
Score = 28.5 bits (62), Expect = 0.086
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 5 KGMEEINREEFQEVVVN-IGRVTKVVKG-----GRRFRFNALVVVGNKNGLVGFGLGKAK 58
+ EE+ EE N + R T ++KG G +V+ +N +G G G ++
Sbjct: 494 RAAEEVFLEEISTGASNDLERATDIIKGMVSYYGMSSVSGLMVLEKQRNAFLGGGYGSSR 553
Query: 59 EVPDAIKKAVDDAFKNLI 76
E + + +D KNL+
Sbjct: 554 EFSEKTAEEMDLFIKNLL 571
>ref|NP_222789.1| UREASE BETA SUBUNIT [Helicobacter pylori J99]
Length = 569
Score = 28.1 bits (61), Expect = 0.11
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 48 GLVGFGLGKA-KEVPDAIKKAVDDAFKNLIHVTIKGTTI--AHDIEHKYNA--SRILLKP 102
G +GF + + P AI A+D A K + V I T+ A +E A R +
Sbjct: 214 GAIGFKIHEDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTF 273
Query: 103 ASEGTGVIAGGSTRPIVELAGIKDILTKSLGSNNPYNV 140
+EG G GG I+++AG +IL S P+ V
Sbjct: 274 HTEGAG---GGHAPDIIKVAGEHNILPASTNPTIPFTV 308
>ref|NP_223177.1| putative Glycolate oxidase [Helicobacter pylori J99]
Length = 459
Score = 25.8 bits (55), Expect = 0.56
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 39 ALVVVGNKNGLVGFGLGKAKEVPDAIKKAVDDAFKNL 75
A+ + G +G G GL KAK +P A + + F+N+
Sbjct: 406 AISLEGTLSGEHGIGLSKAKFMPLAFNHSEMELFRNI 442
>ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter pylori J99]
Length = 608
Score = 23.1 bits (48), Expect = 3.6
Identities = 12/44 (27%), Positives = 22/44 (49%), Gaps = 8/44 (18%)
Query: 89 IEHKYNASRILLKPASE------GTGVIAGGSTRPIVELAGIKD 126
+ H N +L+P SE G ++ G R +++++ IKD
Sbjct: 397 VSHSLNTD--ILRPVSEPFAANGGLKILKGNLGRAVIKISAIKD 438
>ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pylori J99]
Length = 486
Score = 21.9 bits (45), Expect = 8.0
Identities = 10/39 (25%), Positives = 18/39 (45%)
Query: 13 EEFQEVVVNIGRVTKVVKGGRRFRFNALVVVGNKNGLVG 51
EE QE+ + + ++ K ++V N+NG G
Sbjct: 413 EEAQELHLKVNEERRIHKQNGSIEEAEIIVAKNRNGATG 451
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.137 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,959
Number of Sequences: 1491
Number of extensions: 6784
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 6
length of query: 153
length of database: 494,079
effective HSP length: 70
effective length of query: 83
effective length of database: 389,709
effective search space: 32345847
effective search space used: 32345847
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)