BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645916|ref|NP_208095.1| ribosomal protein L18
(rpl18) [Helicobacter pylori 26695]
(119 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223941.1| 50S RIBOSOMAL PROTEIN L18 [Helicobacter py... 228 3e-62
ref|NP_223303.1| putative 3-HYDROXYACID DEHYDROGENASE [Heli... 24 1.3
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 23 2.3
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 23 3.0
ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobact... 23 3.0
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 23 3.0
ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99] 22 6.6
ref|NP_223375.1| putative [Helicobacter pylori J99] 22 6.6
>ref|NP_223941.1| 50S RIBOSOMAL PROTEIN L18 [Helicobacter pylori J99]
Length = 118
Score = 228 bits (582), Expect = 3e-62
Identities = 116/118 (98%), Positives = 116/118 (98%)
Query: 2 MNAKALYKKKALRDRRKLRIKSKLLGDALRPRVSVFRSNRYFYAQAIDDVKQSTITHIDG 61
MNAKALYKKKALRDRRKLRIKSKLLGD LRPRVSVFRSNRYFYAQAIDDVKQSTITHIDG
Sbjct: 1 MNAKALYKKKALRDRRKLRIKSKLLGDKLRPRVSVFRSNRYFYAQAIDDVKQSTITHIDG 60
Query: 62 RKMGFKNTQEDAKKLGALFAEELKKAGIERAVYDRNGYLYHGVVAAFAESLRENGIAL 119
RKMGFKNTQEDAKKLGALFAEELKKAGIERAVYDRNGYLYHGVVAAFAESLRENGI L
Sbjct: 61 RKMGFKNTQEDAKKLGALFAEELKKAGIERAVYDRNGYLYHGVVAAFAESLRENGIVL 118
>ref|NP_223303.1| putative 3-HYDROXYACID DEHYDROGENASE [Helicobacter pylori J99]
Length = 285
Score = 23.9 bits (50), Expect = 1.3
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 8/44 (18%)
Query: 76 LGALFAEELKKAGIERAVYDRNGYLYHGVVAAFAESLRENGIAL 119
+G A L+ AG+E +VY+R + A L+E G+A+
Sbjct: 11 MGTPMATRLRDAGLEVSVYNR--------TESKAAPLKEKGVAV 46
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 23.1 bits (48), Expect = 2.3
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 63 KMGFKNTQEDAKKLGALFAEELKKAGIERAVYDRNGYLYHGVVA 106
K+ +N + D K+G EE + + +V + L H + A
Sbjct: 90 KVLIENAKNDGYKIGFKEGEEKMRNELTHSVNEEKNQLLHAITA 133
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 22.7 bits (47), Expect = 3.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 69 TQEDAKKLGALFAEELKKAGIERAVYDRNGYLY 101
T +DA KL L E ++ + A+YD+ L+
Sbjct: 362 TNQDALKLYQLIFERTIESQGKNAIYDKQDLLF 394
>ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobacter pylori J99]
Length = 414
Score = 22.7 bits (47), Expect = 3.0
Identities = 8/27 (29%), Positives = 16/27 (58%)
Query: 50 DVKQSTITHIDGRKMGFKNTQEDAKKL 76
DVK+ + +DGR++ E+ +K+
Sbjct: 151 DVKEGFLFQLDGRELDNNELYEETRKI 177
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 22.7 bits (47), Expect = 3.0
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 36 VFRSNRYFYAQAIDDVKQSTITHIDGRKMGFKNTQEDAK 74
+F S R ++ AID + + + + KN ++D +
Sbjct: 247 IFNSERLAFSMAIDKINEKYLRGYEAFSNLLKNVKDDVE 285
>ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99]
Length = 508
Score = 21.6 bits (44), Expect = 6.6
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 67 KNTQEDAKKLGALFAEELKKAGIERAVYDRNGYLYHGVVAAFAESLRENGIAL 119
+N + ++ A+F EELKKA LY V AF L N + +
Sbjct: 401 ENKIKRLQEADAIFIEELKKAN-----------LYDKVWQAFCVLLNVNSVGV 442
>ref|NP_223375.1| putative [Helicobacter pylori J99]
Length = 140
Score = 21.6 bits (44), Expect = 6.6
Identities = 13/40 (32%), Positives = 22/40 (54%)
Query: 54 STITHIDGRKMGFKNTQEDAKKLGALFAEELKKAGIERAV 93
S ++ D +KM + +E +K L AEE+K G+ +V
Sbjct: 78 SKMSEEDFKKMREEVRKELEEKTKGLSAEEIKAKGLNVSV 117
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.136 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,266
Number of Sequences: 1491
Number of extensions: 4418
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 8
length of query: 119
length of database: 494,079
effective HSP length: 67
effective length of query: 52
effective length of database: 394,182
effective search space: 20497464
effective search space used: 20497464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 43 (21.2 bits)