BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645919|ref|NP_208098.1| ribosomal protein S14
(rpS14) [Helicobacter pylori 26695]
         (61 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223944.1|  30S RIBOSOMAL PROTEIN S14 [Helicobacter py...   129  2e-32
ref|NP_223188.1|  cag island protein [Helicobacter pylori J99]     21  4.5

>ref|NP_223944.1| 30S RIBOSOMAL PROTEIN S14 [Helicobacter pylori J99]
          Length = 61

 Score =  129 bits (323), Expect = 2e-32
 Identities = 60/61 (98%), Positives = 60/61 (98%)

Query: 1  MAKKSMIAKAQRKPKFQVRAYTRCRICGRPHSVYRDFGLCRVCLRKMGSEGLIPGLRKAS 60
          MAKKSMIAKAQRKPKFQVRAYTRCRICGRPHSVYRDFGLCRVCLRKM SEGLIPGLRKAS
Sbjct: 1  MAKKSMIAKAQRKPKFQVRAYTRCRICGRPHSVYRDFGLCRVCLRKMASEGLIPGLRKAS 60

Query: 61 W 61
          W
Sbjct: 61 W 61



>ref|NP_223188.1| cag island protein [Helicobacter pylori J99]
          Length = 219

 Score = 21.2 bits (43), Expect = 4.5
 Identities = 7/19 (36%), Positives = 10/19 (51%)

Query: 17 QVRAYTRCRICGRPHSVYR 35
          +VR Y  C +C  P  + R
Sbjct: 20 RVRGYLICLVCNTPKMIQR 38



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.330    0.140    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,058
Number of Sequences: 1491
Number of extensions: 1354
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 61
length of database: 494,079
effective HSP length: 37
effective length of query: 24
effective length of database: 438,912
effective search space: 10533888
effective search space used: 10533888
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 40 (20.0 bits)