BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645920|ref|NP_208099.1| ribosomal protein L5 (rpl5)
[Helicobacter pylori 26695]
         (181 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223945.1|  50S RIBOSOMAL PROTEIN L5 [Helicobacter pyl...   345  4e-97
ref|NP_223820.1|  putative Outer membrane function [Helicoba...    24  2.1
ref|NP_223360.1|  putative [Helicobacter pylori J99]               23  3.6
ref|NP_223979.1|  putative Outer membrane protein [Helicobac...    23  4.7
ref|NP_223380.1|  putative Outer membrane protein [Helicobac...    23  4.7
ref|NP_223377.1|  putative Outer membrane protein [Helicobac...    23  4.7
ref|NP_222933.1|  putative Outer membrane protein [Helicobac...    23  4.7
ref|NP_222894.1|  putative [Helicobacter pylori J99]               23  4.7
ref|NP_223624.1|  GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob...    23  6.1
ref|NP_222774.1|  putative [Helicobacter pylori J99]               23  6.1
ref|NP_223743.1|  PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter...    22  8.0
ref|NP_223451.1|  NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PR...    22  8.0

>ref|NP_223945.1| 50S RIBOSOMAL PROTEIN L5 [Helicobacter pylori J99]
          Length = 181

 Score =  345 bits (885), Expect = 4e-97
 Identities = 177/181 (97%), Positives = 179/181 (98%)

Query: 1   MFGLKQFYQSEVRTKLAQELDIKNPMLLPKLEKIVISVGAGAHAKDMKIMQNIAQTISLI 60
           MFGLKQFYQ+EVR KLAQELDIKNPMLLPKLEKIVISVGAGAHAKDMKIMQNIAQTISL+
Sbjct: 1   MFGLKQFYQNEVRAKLAQELDIKNPMLLPKLEKIVISVGAGAHAKDMKIMQNIAQTISLV 60

Query: 61  AGQKAVITKAKKSVAGFKIREGMAVGAKVTLRNKRMYNFLEKLIVISLPRVKDFRGISRN 120
           AGQKAVITKAKKSVAGFKIREGMAVGAKVTLRNKRMYNFLEKLIVISLPRVKDFRGISRN
Sbjct: 61  AGQKAVITKAKKSVAGFKIREGMAVGAKVTLRNKRMYNFLEKLIVISLPRVKDFRGISRN 120

Query: 121 GFDGCGNYTFGINEQLIFPEVVYDDIMVSHGMNITMVTSTDNDKEAFKLLELLGLPFAKV 180
           GFDG GNYTFGINEQLIFPEVVYDDIMVSHGMNITMVTSTDNDKEAFKLLELLGLPFAKV
Sbjct: 121 GFDGRGNYTFGINEQLIFPEVVYDDIMVSHGMNITMVTSTDNDKEAFKLLELLGLPFAKV 180

Query: 181 R 181
           R
Sbjct: 181 R 181



>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
          Length = 643

 Score = 24.3 bits (51), Expect = 2.1
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 62  GQKAVITKAKKSVAGFKIREGMAVGAKVTLRNKRMYNFL 100
           G +  + + KK  +    + GM +G K+   N   Y++L
Sbjct: 585 GLRTNLARPKKKDSDHSAQHGMELGVKIPTINTNYYSYL 623



>ref|NP_223360.1| putative [Helicobacter pylori J99]
          Length = 157

 Score = 23.5 bits (49), Expect = 3.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 21 DIKNPMLLPKLEKIVISV 38
          D+KNP+L  KLE+ ++ +
Sbjct: 77 DLKNPLLQIKLERFLLEI 94



>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 696

 Score = 23.1 bits (48), Expect = 4.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 62  GQKAVITKAKKSVAGFKIREGMAVGAKVTLRNKRMYNFL 100
           G +  + + KK  +    + GM +G K+   N   Y+F+
Sbjct: 638 GLRMNLARPKKKDSDHAAQHGMELGVKIPTINTDYYSFM 676



>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 651

 Score = 23.1 bits (48), Expect = 4.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 62  GQKAVITKAKKSVAGFKIREGMAVGAKVTLRNKRMYNFL 100
           G +  +  AKK  +    + G+ +G K+   N   Y+FL
Sbjct: 593 GLRTNLATAKKKDSERSAQHGVELGIKIPTINTNYYSFL 631



>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 638

 Score = 23.1 bits (48), Expect = 4.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 62  GQKAVITKAKKSVAGFKIREGMAVGAKVTLRNKRMYNFL 100
           G +  +  AKK  +    + G+ +G K+   N   Y+FL
Sbjct: 580 GLRTNLATAKKKDSERSAQHGVELGIKIPTINTNYYSFL 618



>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 696

 Score = 23.1 bits (48), Expect = 4.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 62  GQKAVITKAKKSVAGFKIREGMAVGAKVTLRNKRMYNFL 100
           G +  + + KK  +    + GM +G K+   N   Y+F+
Sbjct: 638 GLRMNLARPKKKDSDHAAQHGMELGVKIPTINTDYYSFM 676



>ref|NP_222894.1| putative [Helicobacter pylori J99]
          Length = 268

 Score = 23.1 bits (48), Expect = 4.7
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 18  QELDIKNPMLLPKLEKIVISVGAGAHAKDMKIMQNIAQTISLIAGQKAVITKAKKSVAGF 77
           + L++ +P    KL+K+V ++        M I  + AQ       +K    K  K+V   
Sbjct: 77  ESLNMDSPKQEDKLDKVVDNIKKQESENSMPIQTDQAQMEMKTTEEKQESQKELKAVEPI 136

Query: 78  KI---REGMAVGAKVTLRNK 94
            +   +E  AV  K T   K
Sbjct: 137 PMSTQKESQAVAKKETPHKK 156



>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
          Length = 701

 Score = 22.7 bits (47), Expect = 6.1
 Identities = 21/83 (25%), Positives = 35/83 (41%), Gaps = 4/83 (4%)

Query: 19  ELDIKNPMLLPKLEKIVISVGAGAHAKDMKIMQNIAQTISLIAGQKAVITKAKKSVAGFK 78
           E D+K P+    LE +V   G G     M+    IAQ ++    QK + + +       +
Sbjct: 346 ENDLKKPLDNAPLESVVFVQGLGTLKDKMERESIIAQYLT----QKYISSLSMPLEKALE 401

Query: 79  IREGMAVGAKVTLRNKRMYNFLE 101
           +       AK  L ++ +Y F E
Sbjct: 402 LISRAIQIAKADLLSEVVYEFSE 424



>ref|NP_222774.1| putative [Helicobacter pylori J99]
          Length = 327

 Score = 22.7 bits (47), Expect = 6.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 61  AGQKAVITKAK--KSVAGFKIREGMAVGAKVTLRNKRMYNFLEKL 103
           A +K  I K++  + +A  K  EGM   + + L N+R+ +  E L
Sbjct: 249 AKEKIAIEKSELEREIARLKSLEGMEAKSDLDLHNRRLASANEDL 293



>ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter pylori J99]
          Length = 608

 Score = 22.3 bits (46), Expect = 8.0
 Identities = 17/55 (30%), Positives = 23/55 (40%), Gaps = 6/55 (10%)

Query: 120 NGFDGCGNYTFGI----NEQLIFPEV-VYDDIMVSHGM-NITMVTSTDNDKEAFK 168
           N F+ CG   F I     E L+F +     D     GM N T     +ND+  +K
Sbjct: 340 NAFEACGGLAFVIKELLKEGLLFEDTHTIMDTETQKGMQNYTKTPFLENDQLVYK 394



>ref|NP_223451.1| NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PRECURSOR [Helicobacter
           pylori J99]
          Length = 260

 Score = 22.3 bits (46), Expect = 8.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 149 SHGMNITMVTSTDNDKEAFK 168
           S G+  TMV  TDN  +A K
Sbjct: 202 SGGLVSTMVKGTDNSNDAIK 221



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.322    0.139    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,822
Number of Sequences: 1491
Number of extensions: 7231
Number of successful extensions: 24
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 12
length of query: 181
length of database: 494,079
effective HSP length: 72
effective length of query: 109
effective length of database: 386,727
effective search space: 42153243
effective search space used: 42153243
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)