BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645921|ref|NP_208100.1| ribosomal protein L24
(rpl24) [Helicobacter pylori 26695]
(73 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223946.1| 50S RIBOSOMAL PROTEIN L24 [Helicobacter py... 142 1e-36
ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P... 26 0.13
ref|NP_224202.1| abc transporter, ATP-binding protein [Heli... 24 0.66
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 24 0.66
ref|NP_222731.1| 10kDa chaperone [Helicobacter pylori J99] 24 0.66
ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori... 23 1.1
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 23 1.5
ref|NP_223558.1| ACETATE KINASE [Helicobacter pylori J99] 22 1.9
ref|NP_224041.1| putative [Helicobacter pylori J99] 21 5.6
ref|NP_223622.1| putative cation efflux system protein [Hel... 21 5.6
ref|NP_223539.1| IRON(III) DICITRATE TRANSPORT SYSTEM ATP-B... 21 5.6
ref|NP_222879.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helico... 21 5.6
ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pyl... 20 7.3
ref|NP_222838.1| putative Outer membrane protein [Helicobac... 20 7.3
ref|NP_222754.1| putative [Helicobacter pylori J99] 20 7.3
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 20 9.5
ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Heli... 20 9.5
ref|NP_223082.1| S-ADENOSYLMETHIONINE TRNA RIBOSYLTRANSFERA... 20 9.5
>ref|NP_223946.1| 50S RIBOSOMAL PROTEIN L24 [Helicobacter pylori J99]
Length = 73
Score = 142 bits (358), Expect = 1e-36
Identities = 71/73 (97%), Positives = 72/73 (98%)
Query: 1 MKSEIKKNDIVKVIAGDDKGKVAKVLAVLPKTSQVVVEGCKVVKKAIKPTDDNPKGGFIH 60
MKSEIKKND+VKVIAGDDKGKVAKVLAVLPKTSQVVVEGCKVVKKAIKPTDDNPKGGFI
Sbjct: 1 MKSEIKKNDMVKVIAGDDKGKVAKVLAVLPKTSQVVVEGCKVVKKAIKPTDDNPKGGFIK 60
Query: 61 KEKPMHISNVKKA 73
KEKPMHISNVKKA
Sbjct: 61 KEKPMHISNVKKA 73
>ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P-TYPE ATPASE
[Helicobacter pylori J99]
Length = 686
Score = 26.2 bits (56), Expect = 0.13
Identities = 12/34 (35%), Positives = 17/34 (49%)
Query: 3 SEIKKNDIVKVIAGDDKGKVAKVLAVLPKTSQVV 36
SE+ K VI D + KVLA+ KT ++
Sbjct: 604 SELSKQSADIVITNDSLSSLVKVLAIAKKTKSII 637
>ref|NP_224202.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 327
Score = 23.9 bits (50), Expect = 0.66
Identities = 15/52 (28%), Positives = 26/52 (49%), Gaps = 6/52 (11%)
Query: 4 EIKKNDIVKVIAGDDKGKVAKVLAV----LPKTSQVVVEGCKVVKKAIKPTD 51
E+KK DI+ VI GK + + P + +V+V G ++ +KP +
Sbjct: 25 ELKKGDILGVIGYSGAGKSTLIRLINCLERPSSGEVLVNGVNLLN--LKPKE 74
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 23.9 bits (50), Expect = 0.66
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 6 KKNDIVKVIAGDDKGKVAKVLAVLPKTSQVVVE 38
K ND++K + DK K+ + PK ++++
Sbjct: 150 KHNDLMKTLPSSDKFKILLAQVLFPKPDILLLD 182
>ref|NP_222731.1| 10kDa chaperone [Helicobacter pylori J99]
Length = 118
Score = 23.9 bits (50), Expect = 0.66
Identities = 10/28 (35%), Positives = 15/28 (52%)
Query: 18 DKGKVAKVLAVLPKTSQVVVEGCKVVKK 45
D K ++ V+ S + EGCK VK+
Sbjct: 29 DNAKEKPLMGVVKAVSHKISEGCKCVKE 56
>ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori J99]
Length = 519
Score = 23.1 bits (48), Expect = 1.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 26 LAVLPKTSQVVVEGCKVVKKAIKP 49
L + P+ ++V+ CK + KA+KP
Sbjct: 4 LWIYPEDTEVLGAACKSLLKALKP 27
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 22.7 bits (47), Expect = 1.5
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 1 MKSEIKKNDIVKVIAGD 17
+ E++ D+VK+I GD
Sbjct: 463 LNQELRSGDVVKIIKGD 479
>ref|NP_223558.1| ACETATE KINASE [Helicobacter pylori J99]
Length = 403
Score = 22.3 bits (46), Expect = 1.9
Identities = 11/30 (36%), Positives = 18/30 (59%), Gaps = 1/30 (3%)
Query: 36 VVEGCKVVKKAI-KPTDDNPKGGFIHKEKP 64
V EG + + A+ KPT+DNP ++ +P
Sbjct: 343 VCEGLENLGIALHKPTNDNPGSALVNLSQP 372
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 20.8 bits (42), Expect = 5.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 5 IKKNDIVKVIAGDDKGKVAKVLAVL 29
IK ND+V + A G A V AVL
Sbjct: 458 IKPNDLVIISAKAIPGNEASVSAVL 482
>ref|NP_223622.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 359
Score = 20.8 bits (42), Expect = 5.6
Identities = 11/37 (29%), Positives = 18/37 (47%)
Query: 1 MKSEIKKNDIVKVIAGDDKGKVAKVLAVLPKTSQVVV 37
+ IK++ V G+ GK+ V VL K S ++
Sbjct: 224 VSKSIKRDSPVYNEEGEKIGKIQSVSVVLDKGSNTIL 260
>ref|NP_223539.1| IRON(III) DICITRATE TRANSPORT SYSTEM ATP-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 255
Score = 20.8 bits (42), Expect = 5.6
Identities = 11/48 (22%), Positives = 21/48 (42%), Gaps = 3/48 (6%)
Query: 5 IKKNDIVKVIAGDDKGKVAK---VLAVLPKTSQVVVEGCKVVKKAIKP 49
+ KN I ++A + GK +L +L + ++ C +KP
Sbjct: 25 VPKNSITSILAPNGSGKTTLLKCLLGLLKPLEETEIKACNKDILPLKP 72
>ref|NP_222879.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 390
Score = 20.8 bits (42), Expect = 5.6
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 10/34 (29%)
Query: 4 EIKKNDIVKVIAGDDKGKVAKVLAVLPKTSQVVV 37
E+K+N+ VK++ G A++PK + +V
Sbjct: 82 EVKENECVKIMTG----------AMVPKGIETIV 105
>ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 421
Score = 20.4 bits (41), Expect = 7.3
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 2 KSEIKKNDIVKVIAGDDKGKVAKVLAVL 29
K EI+ +++ D+KG +++ A+L
Sbjct: 335 KEEIQCAYYARLLVSDEKGVFSQISAIL 362
>ref|NP_222838.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 286
Score = 20.4 bits (41), Expect = 7.3
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 49 PTDDNPKGGFIH 60
PT NP GG H
Sbjct: 81 PTASNPTGGLTH 92
>ref|NP_222754.1| putative [Helicobacter pylori J99]
Length = 335
Score = 20.4 bits (41), Expect = 7.3
Identities = 13/42 (30%), Positives = 21/42 (49%)
Query: 14 IAGDDKGKVAKVLAVLPKTSQVVVEGCKVVKKAIKPTDDNPK 55
IA D++ + K+ A LPK + G +++ K NPK
Sbjct: 267 IALDERFIITKIGAHLPKGLDFLKLGDRILWVNHKSVSFNPK 308
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 20.0 bits (40), Expect = 9.5
Identities = 10/21 (47%), Positives = 12/21 (56%)
Query: 41 KVVKKAIKPTDDNPKGGFIHK 61
K +KKA K N K GFI +
Sbjct: 537 KTLKKAFKKHAFNNKVGFIEQ 557
>ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 452
Score = 20.0 bits (40), Expect = 9.5
Identities = 9/21 (42%), Positives = 12/21 (56%)
Query: 5 IKKNDIVKVIAGDDKGKVAKV 25
+KK D V V D K+AK+
Sbjct: 300 VKKLDFVGVFVKDKIKKIAKI 320
>ref|NP_223082.1| S-ADENOSYLMETHIONINE TRNA RIBOSYLTRANSFERASE-ISOMERASE
[Helicobacter pylori J99]
Length = 345
Score = 20.0 bits (40), Expect = 9.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 25 VLAVLPKTSQVVVEGCKVVK 44
VL PK + VV+ KV+K
Sbjct: 49 VLDFFPKNALVVLNDTKVIK 68
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.132 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,917
Number of Sequences: 1491
Number of extensions: 2594
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 73
length of database: 494,079
effective HSP length: 49
effective length of query: 24
effective length of database: 421,020
effective search space: 10104480
effective search space used: 10104480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 40 (20.0 bits)