BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645922|ref|NP_208101.1| ribosomal protein L14
(rpl14) [Helicobacter pylori 26695]
(122 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223947.1| 50S RIBOSOMAL PROTEIN L14 [Helicobacter py... 228 5e-62
ref|NP_223596.1| D-Amino acid dehydrogenase [Helicobacter p... 25 0.64
ref|NP_224119.1| putative ferredoxin-like protein [Helicoba... 23 3.2
ref|NP_223028.1| FLAGELLAR L-RING PROTEIN PRECURSOR (BASAL ... 23 3.2
ref|NP_223006.1| DIPEPTIDE TRANSPORT SYSTEM DIPEPTIDE TRANS... 21 9.2
>ref|NP_223947.1| 50S RIBOSOMAL PROTEIN L14 [Helicobacter pylori J99]
Length = 122
Score = 228 bits (580), Expect = 5e-62
Identities = 119/122 (97%), Positives = 119/122 (97%)
Query: 1 MIQSFTRLNVADNSGAKEIMCIKVLGGSHKRYASVGSVIVASVKKAIPNGKVKRGQVVKA 60
MIQSFTRLNVADNSGAKEIMCIKVLGGSHKRYASVGSVIVASVKKAIPNGKVK G VVK
Sbjct: 1 MIQSFTRLNVADNSGAKEIMCIKVLGGSHKRYASVGSVIVASVKKAIPNGKVKFGLVVKT 60
Query: 61 VVVRTKKEIQRKNGSLVRFDDNAAVILDAKKDPVGTRIFGPVSREVRYANFMKIISLAPE 120
VVVRTKKEIQRKNGSLVRFDDNAAVILDAKKDPVGTRIFGPVSREVRYANFMKIISLAPE
Sbjct: 61 VVVRTKKEIQRKNGSLVRFDDNAAVILDAKKDPVGTRIFGPVSREVRYANFMKIISLAPE 120
Query: 121 VV 122
VV
Sbjct: 121 VV 122
>ref|NP_223596.1| D-Amino acid dehydrogenase [Helicobacter pylori J99]
Length = 410
Score = 25.0 bits (53), Expect = 0.64
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 7 RLNVADNSGAKEIMCIKVLGGSHKRYASVGSVIVASVKKAIPNGKVKRGQVVKAV 61
+L DNSGA +I+ +K K Y + + + N V G+VV+++
Sbjct: 150 KLKTCDNSGAYKILNVK----ETKEYMPIANDNICGSVLLTENAHVDPGEVVRSL 200
>ref|NP_224119.1| putative ferredoxin-like protein [Helicobacter pylori J99]
Length = 458
Score = 22.7 bits (47), Expect = 3.2
Identities = 12/38 (31%), Positives = 19/38 (49%)
Query: 29 HKRYASVGSVIVASVKKAIPNGKVKRGQVVKAVVVRTK 66
H+ Y + +KK + +K GQ +KAVV+ K
Sbjct: 376 HEFYFKILGQKDIQIKKPLNPIAIKAGQKIKAVVILRK 413
>ref|NP_223028.1| FLAGELLAR L-RING PROTEIN PRECURSOR (BASAL BODY L-RING PROTEIN)
[Helicobacter pylori J99]
Length = 237
Score = 22.7 bits (47), Expect = 3.2
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 26 GGSHKRYASVGSVIVASVKKAIPNGK-VKRGQVVKAVVVRTKKEIQRKNGSLVRFD 80
GGS K+ + V+ A + K + NG G K V+V +K+I + +G + +D
Sbjct: 140 GGSQKKSEDLEIVLSARIIKVLENGNYFIYGN--KEVLVDGEKQILKVSGVIRPYD 193
>ref|NP_223006.1| DIPEPTIDE TRANSPORT SYSTEM DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 287
Score = 21.2 bits (43), Expect = 9.2
Identities = 7/22 (31%), Positives = 15/22 (67%)
Query: 58 VKAVVVRTKKEIQRKNGSLVRF 79
++A ++ KE+Q+K G+ + F
Sbjct: 189 IQAQILELMKELQQKKGTSILF 210
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.135 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,897
Number of Sequences: 1491
Number of extensions: 3968
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 122
length of database: 494,079
effective HSP length: 67
effective length of query: 55
effective length of database: 394,182
effective search space: 21680010
effective search space used: 21680010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)