BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645923|ref|NP_208102.1| ribosomal protein S17
(rps17) [Helicobacter pylori 26695]
(86 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223948.1| 30S RIBOSOMAL PROTEIN S17 [Helicobacter py... 170 4e-45
ref|NP_223038.1| putative [Helicobacter pylori J99] 24 0.48
ref|NP_223319.1| putative [Helicobacter pylori J99] 23 0.82
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 23 1.1
ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) ... 23 1.4
ref|NP_224174.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 22 2.4
ref|NP_223317.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 22 3.1
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 22 3.1
ref|NP_222756.1| DNA transformation competancy [Helicobacte... 21 4.1
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 21 5.3
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 21 5.3
ref|NP_223494.1| putative [Helicobacter pylori J99] 20 7.0
ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99] 20 7.0
ref|NP_223070.1| putative [Helicobacter pylori J99] 20 9.1
ref|NP_223065.1| putative [Helicobacter pylori J99] 20 9.1
ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE P... 20 9.1
ref|NP_222765.1| putative TYPE II DNA MODIFICATION ENZYME (... 20 9.1
>ref|NP_223948.1| 30S RIBOSOMAL PROTEIN S17 [Helicobacter pylori J99]
Length = 86
Score = 170 bits (431), Expect = 4e-45
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MNTKEPHKRLVQGKVISKFAEKSAVILVERKVVHEKYRKIVKKFKKYTIHDENNQVKVGD 60
MNTKEPHKRLVQGKVISKFAEKSAVILVERKVVHEKYRKIVKKFKKYTIHDENNQVKVGD
Sbjct: 1 MNTKEPHKRLVQGKVISKFAEKSAVILVERKVVHEKYRKIVKKFKKYTIHDENNQVKVGD 60
Query: 61 FVSAIECRPLSKTKSFTLKEILVVGV 86
FVSAIECRPLSKTKSFTLKEILVVGV
Sbjct: 61 FVSAIECRPLSKTKSFTLKEILVVGV 86
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 24.3 bits (51), Expect = 0.48
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 14 KVISKFAEKSAVILVERKVVHEKYRKIVKKFKKYTIHDENNQVK 57
K++ + EK + + K + EK K K FK+ +N Q K
Sbjct: 69 KIMFEAEEKRLLEQIHAKELKEKQEKTTKHFKEVWEKGDNEQEK 112
>ref|NP_223319.1| putative [Helicobacter pylori J99]
Length = 353
Score = 23.5 bits (49), Expect = 0.82
Identities = 15/43 (34%), Positives = 20/43 (45%), Gaps = 10/43 (23%)
Query: 40 IVKKFKKYTIHDENNQVKVGDFVSAIECRPLSKTKSFTLKEIL 82
I +KF TIH SA+E +SK +LKE+L
Sbjct: 114 IAQKFPTITIHG----------FSAVEIDYISKISKLSLKEVL 146
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 23.1 bits (48), Expect = 1.1
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Query: 28 VERKVVHEKYRKIVK-KFKKYTIHDENNQVKVGDFVSAIECRPLSK 72
++ K+ Y K + +F T EN Q+K G +VS + L+K
Sbjct: 746 LKEKIAFNAYLKYPETQFNNATHKSENLQLKAGVYVSKAFLKKLNK 791
>ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 433
Score = 22.7 bits (47), Expect = 1.4
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 36 KYRKIVKKFKKYTIHDENNQVKVG 59
K IV + KYTI++ NN+V G
Sbjct: 286 KNNMIVAQAAKYTIYNINNRVFCG 309
>ref|NP_224174.1| putative [Helicobacter pylori J99]
Length = 312
Score = 21.9 bits (45), Expect = 2.4
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 19 FAEKSAVILVERKVVHEKYRKIVKKF-----KKYTIHDENNQVKVGDFV 62
+A S V+ + K + Y ++K F K Y H VK G+FV
Sbjct: 183 YASASGVVGLASKGWNGGYGNLIKVFHPFGFKTYYAHLNKIVVKTGEFV 231
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 21.9 bits (45), Expect = 2.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 32 VVHEKYRKIVKKFKKYTIHDENNQVK 57
++H ++ IV +FK Y + N K
Sbjct: 310 IIHLNFKPIVSRFKDYIALPKENGYK 335
>ref|NP_223317.1| putative [Helicobacter pylori J99]
Length = 360
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/15 (66%), Positives = 11/15 (72%)
Query: 52 ENNQVKVGDFVSAIE 66
ENN +KVG SAIE
Sbjct: 255 ENNYLKVGKSPSAIE 269
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 52 ENNQVKVGDFVSAIECRPLSKTKSFTLKEILVV 84
E ++K G F+ + L K LKE L +
Sbjct: 415 EEEKIKAGHFMQPLRLALLGKGGGIGLKEALFI 447
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 21.6 bits (44), Expect = 3.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 54 NQVKVGDFVSAIECRPLSK 72
N V+ GDF I C P +K
Sbjct: 396 NYVENGDFTQEIACVPKNK 414
>ref|NP_222756.1| DNA transformation competancy [Helicobacter pylori J99]
Length = 247
Score = 21.2 bits (43), Expect = 4.1
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 23 SAVILVERKVVHEKYRKIVKKF 44
+A +L E K+V+EK KIV +
Sbjct: 190 AAKLLNENKLVYEKRYKIVLSY 211
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 20.8 bits (42), Expect = 5.3
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 10 LVQGKVISKFAEKSAVILVERKVVHEKYRKIVKKFKKYTIHDENNQVKVGDFVSAIECRP 69
LV G K +E ++ L E K E Y FK++ + D+++ +
Sbjct: 733 LVYGMGSKKLSETLSIPLSEAKSYIEAY------FKRFP--------SIKDYLNGMREEI 778
Query: 70 LSKTKSFTL 78
L +K+FTL
Sbjct: 779 LKTSKAFTL 787
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 20.8 bits (42), Expect = 5.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 51 DENNQVKVGDFVSA 64
DE+ VKVG +VSA
Sbjct: 876 DESGIVKVGTYVSA 889
>ref|NP_223494.1| putative [Helicobacter pylori J99]
Length = 205
Score = 20.4 bits (41), Expect = 7.0
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 8 KRLVQGKVISKFAEKSAVILVERK 31
+ L VI +F + +IL ERK
Sbjct: 144 RHLTPEYVIQRFQKSGEIILYERK 167
>ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99]
Length = 476
Score = 20.4 bits (41), Expect = 7.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 12 QGKVISKFAEKSAVILVERKVVHEKYRKIVKKF 44
QG +I+K E + + EKY+ K+F
Sbjct: 429 QGNIITKIEEVEVKSVADFNHALEKYKGKPKRF 461
>ref|NP_223070.1| putative [Helicobacter pylori J99]
Length = 272
Score = 20.0 bits (40), Expect = 9.1
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 38 RKIVKKFKKYTIHDENNQVKVGD 60
++I+K+F K + E +K+ D
Sbjct: 173 KEIIKRFVKKDLFTETLSIKITD 195
>ref|NP_223065.1| putative [Helicobacter pylori J99]
Length = 381
Score = 20.0 bits (40), Expect = 9.1
Identities = 10/32 (31%), Positives = 16/32 (49%)
Query: 49 IHDENNQVKVGDFVSAIECRPLSKTKSFTLKE 80
I +EN +V + E +S +FTLK+
Sbjct: 105 IANENQKVIESQIIPTAEQTQMSSQLNFTLKK 136
>ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE
[Helicobacter pylori J99]
Length = 484
Score = 20.0 bits (40), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 23 SAVILVERKVVHEKYRKIVKK 43
S + L +R + HEK+ + VKK
Sbjct: 310 SLISLKDRFLPHEKHSQKVKK 330
>ref|NP_222765.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 230
Score = 20.0 bits (40), Expect = 9.1
Identities = 11/31 (35%), Positives = 15/31 (47%)
Query: 7 HKRLVQGKVISKFAEKSAVILVERKVVHEKY 37
H+R VQ + +A K V K +EKY
Sbjct: 119 HRRYVQDTEFALWAVKKKAKWVFNKPKNEKY 149
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.134 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,060
Number of Sequences: 1491
Number of extensions: 3453
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 86
length of database: 494,079
effective HSP length: 62
effective length of query: 24
effective length of database: 401,637
effective search space: 9639288
effective search space used: 9639288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)