BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645924|ref|NP_208103.1| ribosomal protein L29
(rpL29) [Helicobacter pylori 26695]
(66 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223949.1| 50S RIBOSOMAL PROTEIN L29 [Helicobacter py... 124 5e-31
ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helico... 26 0.18
ref|NP_223270.1| putative [Helicobacter pylori J99] 23 1.5
ref|NP_223415.1| putative [Helicobacter pylori J99] 22 2.0
ref|NP_224207.1| PYRIDOXAL PHOSPHATE SYNTHETASE [Helicobact... 22 2.6
ref|NP_223629.1| putative [Helicobacter pylori J99] 22 2.6
ref|NP_223639.1| putative [Helicobacter pylori J99] 22 3.4
ref|NP_223385.1| putative [Helicobacter pylori J99] 21 4.4
ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobact... 21 4.4
ref|NP_224185.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicoba... 21 5.7
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 21 5.7
ref|NP_223520.1| putative [Helicobacter pylori J99] 21 5.7
ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori ... 21 5.7
ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter... 21 5.7
ref|NP_222846.1| putative [Helicobacter pylori J99] 21 5.7
ref|NP_224097.1| putative [Helicobacter pylori J99] 20 7.5
ref|NP_223388.1| putative [Helicobacter pylori J99] 20 7.5
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 20 7.5
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 20 9.8
ref|NP_223855.1| putative [Helicobacter pylori J99] 20 9.8
ref|NP_223329.1| glycerol-3-phosphate dehydrogenase [Helico... 20 9.8
ref|NP_223150.1| putative [Helicobacter pylori J99] 20 9.8
ref|NP_223000.1| ALIPHATIC AMIDASE [Helicobacter pylori J99] 20 9.8
>ref|NP_223949.1| 50S RIBOSOMAL PROTEIN L29 [Helicobacter pylori J99]
Length = 66
Score = 124 bits (310), Expect = 5e-31
Identities = 64/66 (96%), Positives = 65/66 (97%)
Query: 1 MKYTELKDKSIKELEELLHAKKAELFELRVKLKAMQLSNPNEIKKARRNIARINTAINAH 60
MKYTELKDKSIKELEELLHAKKAELFELRVKLK MQLSNPNEIKKARRNIARINTAINA+
Sbjct: 1 MKYTELKDKSIKELEELLHAKKAELFELRVKLKNMQLSNPNEIKKARRNIARINTAINAY 60
Query: 61 YSSSVE 66
YSSSVE
Sbjct: 61 YSSSVE 66
>ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 25.8 bits (55), Expect = 0.18
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 12 KELEELLHAKKAELFELRVKLKAMQLSNP---NEIKKARRNIARINTAI 57
+ + LLH KKA L L LK + N N +K + IA N +
Sbjct: 282 RSFKTLLHQKKAHLEHLAASLKRLSFENKHHLNALKLEKLTIALDNKTL 330
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 22.7 bits (47), Expect = 1.5
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 2 KYTELKDKSIKELEELLHAKKAELFELRVKLKAMQLSNPNEIKKARRNIARINTAINAHY 61
KY E DK+ L ELL L L+A +LS +K A +NA Y
Sbjct: 75 KYHEKSDKAALGLYELLKGATTNL-----SLQAQELSVKQAMKNHTIAKAMFLPTLNASY 129
Query: 62 S 62
+
Sbjct: 130 N 130
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 22.3 bits (46), Expect = 2.0
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 1 MKYT--ELKDKSIKELEELLHAKKAEL 25
M YT E+K +++LEE L A+K+ L
Sbjct: 154 MAYTKDEIKSMILEQLEEELEAQKSAL 180
>ref|NP_224207.1| PYRIDOXAL PHOSPHATE SYNTHETASE [Helicobacter pylori J99]
Length = 262
Score = 21.9 bits (45), Expect = 2.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 6 LKDKSIKELEELLH 19
LKDK KEL+E LH
Sbjct: 178 LKDKCPKELKEELH 191
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 21.9 bits (45), Expect = 2.6
Identities = 10/28 (35%), Positives = 14/28 (49%)
Query: 6 LKDKSIKELEELLHAKKAELFELRVKLK 33
L+ +KELEE H K + KL+
Sbjct: 238 LEKTDLKELEEYYHKNKVSYLDKEGKLQ 265
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 21.6 bits (44), Expect = 3.4
Identities = 14/36 (38%), Positives = 18/36 (49%)
Query: 12 KELEELLHAKKAELFELRVKLKAMQLSNPNEIKKAR 47
K LEE L K + +E VK KA+ E KA+
Sbjct: 13 KILEERLKEKYGDDWEKHVKAKAINEEELEEQVKAK 48
>ref|NP_223385.1| putative [Helicobacter pylori J99]
Length = 101
Score = 21.2 bits (43), Expect = 4.4
Identities = 11/29 (37%), Positives = 16/29 (54%)
Query: 24 ELFELRVKLKAMQLSNPNEIKKARRNIAR 52
ELFE+ L NP+EIK+ + I +
Sbjct: 73 ELFEILKDLIQEYEQNPDEIKQNLKEILK 101
>ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobacter pylori J99]
Length = 414
Score = 21.2 bits (43), Expect = 4.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 3 YTELKDKSIKELEELLHAKKAELFELRVKLKAMQ 36
Y + K K K+L + L+ +KA ++++ + L Q
Sbjct: 255 YLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQ 288
>ref|NP_224185.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99]
Length = 140
Score = 20.8 bits (42), Expect = 5.7
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 13 ELEELLHAKKAELFELRV-KLKAMQLSNPNEI 43
+ E +L KKAE+FE + K+ + +NP +
Sbjct: 42 DFESVLAEKKAEIFENQSGKVLPLAHTNPRHL 73
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 20.8 bits (42), Expect = 5.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 27 ELRVKLKAMQLSNPNEIKKARRN 49
E+RV ++ L+N E K R N
Sbjct: 79 EVRVLIEVKALNNKTEFPKNREN 101
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 20.8 bits (42), Expect = 5.7
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 11 IKELEELLHAKKAELFELRVKLKAMQLSNPN 41
+K+++E+L KK+ L L+ ++ +L N
Sbjct: 26 LKQVQEILRKKKSVLKGLKQEICQKKLEKEN 56
>ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori J99]
Length = 675
Score = 20.8 bits (42), Expect = 5.7
Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 1 MKYTELKDKSIKELEELLHAKKAELFELRVKLKAMQLSNPNE-IKKARRNIA 51
+K+ + D ++ E + A +L+E ++ K + ++P E ++K + +A
Sbjct: 33 LKFLAIYDTNLDEFYMIRVAGLKQLYEHKIASKGIDGASPEEQLEKIKHYLA 84
>ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter pylori J99]
Length = 437
Score = 20.8 bits (42), Expect = 5.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 2 KYTELKDKSIKELEELLHAKKA 23
K T +K+ L+ELL+ KKA
Sbjct: 230 KETHIKETQRGSLKELLNHKKA 251
>ref|NP_222846.1| putative [Helicobacter pylori J99]
Length = 211
Score = 20.8 bits (42), Expect = 5.7
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 1 MKYTELKDKSIKELEELLHAKKAELFELRVKL 32
+ + KD +++ ++ + A + ELFE+ L
Sbjct: 84 LNFEAFKDFTLQPYDKEIEAMREELFEIDTAL 115
>ref|NP_224097.1| putative [Helicobacter pylori J99]
Length = 376
Score = 20.4 bits (41), Expect = 7.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 5 ELKDKSIKELEELLHAKKAELFELRVKLKAMQLSNPNE 42
E++ K ++EE AEL +K+K + L NP+E
Sbjct: 145 EIRFKRNAQIEE------AELGTDGIKIKPIALYNPSE 176
>ref|NP_223388.1| putative [Helicobacter pylori J99]
Length = 192
Score = 20.4 bits (41), Expect = 7.5
Identities = 9/26 (34%), Positives = 18/26 (68%)
Query: 3 YTELKDKSIKELEELLHAKKAELFEL 28
+ +L+ +S+KELE L + ++ E F +
Sbjct: 44 FQKLERESLKELESLKNNEEWENFTI 69
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 20.4 bits (41), Expect = 7.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 27 ELRVKLKAMQLSNPNEIK 44
EL +LKA + NPN I+
Sbjct: 37 ELYQELKAYEEENPNRIQ 54
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 20.0 bits (40), Expect = 9.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 5 ELKDKSIKELEELLHAKKAELFELRVKLKAMQLSNPNEIKK 45
+LK S+ E L KK E FE + L++ + +KK
Sbjct: 799 DLKGISVLEKLHLKEFKKPENFEAVLALRSAFNEELDRLKK 839
>ref|NP_223855.1| putative [Helicobacter pylori J99]
Length = 234
Score = 20.0 bits (40), Expect = 9.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 3 YTELKDKSIKELEELLHAKKA 23
Y ELK S +E+E+ L A A
Sbjct: 207 YKELKRLSNEEIEKYLGANNA 227
>ref|NP_223329.1| glycerol-3-phosphate dehydrogenase [Helicobacter pylori J99]
Length = 433
Score = 20.0 bits (40), Expect = 9.8
Identities = 8/31 (25%), Positives = 14/31 (44%)
Query: 31 KLKAMQLSNPNEIKKARRNIARINTAINAHY 61
K + + NP KK + + +N+HY
Sbjct: 318 KKETITYHNPCHAKKTLNAHKEVRSLLNSHY 348
>ref|NP_223150.1| putative [Helicobacter pylori J99]
Length = 599
Score = 20.0 bits (40), Expect = 9.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 5 ELKDKSIKELEELLHAKKAELFELRVKL 32
+LKD+ +KE++ + K E+ E + K+
Sbjct: 329 KLKDRLLKEMQTNIAMKCEEMGEGKFKV 356
>ref|NP_223000.1| ALIPHATIC AMIDASE [Helicobacter pylori J99]
Length = 339
Score = 20.0 bits (40), Expect = 9.8
Identities = 9/24 (37%), Positives = 14/24 (57%)
Query: 30 VKLKAMQLSNPNEIKKARRNIARI 53
V K +L NE+ + RNIA++
Sbjct: 18 VNYKMPRLHTKNEVLENCRNIAKV 41
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.311 0.126 0.315
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,997
Number of Sequences: 1491
Number of extensions: 1991
Number of successful extensions: 23
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of query: 66
length of database: 494,079
effective HSP length: 42
effective length of query: 24
effective length of database: 431,457
effective search space: 10354968
effective search space used: 10354968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 40 (20.0 bits)