BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645927|ref|NP_208106.1| ribosomal protein L22
(rpl22) [Helicobacter pylori 26695]
(122 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223952.1| 50S RIBOSOMAL PROTEIN L22 [Helicobacter py... 229 2e-62
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 26 0.29
ref|NP_222824.1| putative [Helicobacter pylori J99] 24 1.4
ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 23 3.2
ref|NP_223298.1| putative [Helicobacter pylori J99] 21 9.2
>ref|NP_223952.1| 50S RIBOSOMAL PROTEIN L22 [Helicobacter pylori J99]
Length = 122
Score = 229 bits (583), Expect = 2e-62
Identities = 121/122 (99%), Positives = 122/122 (99%)
Query: 1 MSKALLRFVRLSPTKARLIARQIQGMNAELAIASLEFTPNKAARVLSKVVASAVANGSLD 60
MSKALL+FVRLSPTKARLIARQIQGMNAELAIASLEFTPNKAARVLSKVVASAVANGSLD
Sbjct: 1 MSKALLKFVRLSPTKARLIARQIQGMNAELAIASLEFTPNKAARVLSKVVASAVANGSLD 60
Query: 61 AKSALIVSCRVDAGPVLRRSIPRAKGRATAIRKPTSHVFVEVAEGKEMKSSKSHKKNQAE 120
AKSALIVSCRVDAGPVLRRSIPRAKGRATAIRKPTSHVFVEVAEGKEMKSSKSHKKNQAE
Sbjct: 61 AKSALIVSCRVDAGPVLRRSIPRAKGRATAIRKPTSHVFVEVAEGKEMKSSKSHKKNQAE 120
Query: 121 GK 122
GK
Sbjct: 121 GK 122
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 26.2 bits (56), Expect = 0.29
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 1 MSKALLRFVRLSPTKARLIARQIQGM-NAELAIASLEFTPNKAARVLSKVVASAV 54
++ L R+ L T + + Q + N E + + L+ TPN A + +S ++SAV
Sbjct: 52 LNNLLTRYNELKQTASNTDSSTAQAIDNLEKSASRLKTTPNTANQAVSSALSSAV 106
>ref|NP_222824.1| putative [Helicobacter pylori J99]
Length = 266
Score = 23.9 bits (50), Expect = 1.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 1 MSKALLRFVRLSPTKARLIARQIQGMNAELAIASLEFTPNKAAR 44
M K LL V S + RLIA + ++ + LE++ + R
Sbjct: 148 MEKFLLELVGRSVKEVRLIAASVNALSLARQLERLEYSSAQITR 191
>ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 183
Score = 22.7 bits (47), Expect = 3.2
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 2 SKALLRFVRLSPTKARLIARQIQGMNAELAIASLEFTPNKAARVLSKVVASAVANGSLDA 61
SKALL FV + L+ + G+ L + + E + A++ +V A+ +AN + +A
Sbjct: 16 SKALL-FVIIGSVLVMLL---LVGVIIMLLMGNKEESKENASKNTQEVQANPMANKNQEA 71
Query: 62 KSALIVSCRVDAGPVLRRSIPRA 84
K + + GP+ P A
Sbjct: 72 KEGSNIQQYLVLGPLYAIDAPFA 94
>ref|NP_223298.1| putative [Helicobacter pylori J99]
Length = 150
Score = 21.2 bits (43), Expect = 9.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 14 TKARLIARQIQGMNAELAIASLEFTP 39
TKA+ +AR+ + E AI + TP
Sbjct: 52 TKAQEVAREENAIQQENAIIDVRTTP 77
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.126 0.330
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,154
Number of Sequences: 1491
Number of extensions: 2461
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 122
length of database: 494,079
effective HSP length: 67
effective length of query: 55
effective length of database: 394,182
effective search space: 21680010
effective search space used: 21680010
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)