BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645928|ref|NP_208107.1| ribosomal protein S19
(rps19) [Helicobacter pylori 26695]
(93 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223953.1| 30S RIBOSOMAL PROTEIN S19 [Helicobacter py... 195 2e-52
ref|NP_223355.1| 3-OXOACID COA-TRANSFERASE, SUBUNIT A [Heli... 24 0.61
ref|NP_223533.1| HOLLIDAY JUNCTION DNA HELICASE [Helicobact... 23 1.4
ref|NP_223526.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_224046.1| putative PROTEASE IV [Helicobacter pylori ... 22 3.0
ref|NP_223686.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 22 3.0
ref|NP_223602.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT B [H... 21 4.0
ref|NP_224053.1| putative carbon storage regulator [Helicob... 21 5.2
ref|NP_223891.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223498.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_223250.1| ENDONUCLEASE III [Helicobacter pylori J99] 20 6.8
>ref|NP_223953.1| 30S RIBOSOMAL PROTEIN S19 [Helicobacter pylori J99]
Length = 93
Score = 195 bits (495), Expect = 2e-52
Identities = 92/93 (98%), Positives = 93/93 (99%)
Query: 1 MSRSIKKGPFIDDHLMKKTLKAKEGKDNRPIKTWSRRSTILPEMIGFTYNVHNGRVFIPV 60
MSRSIKKGPFIDDHLMKKTLKAKEGKDNRPIKTWSRRSTILPEMIGFTYNVHNGRVF+PV
Sbjct: 1 MSRSIKKGPFIDDHLMKKTLKAKEGKDNRPIKTWSRRSTILPEMIGFTYNVHNGRVFVPV 60
Query: 61 YITENHVGYKLGEFAPTRTFKGHKGSVQKKIGK 93
YITENHVGYKLGEFAPTRTFKGHKGSVQKKIGK
Sbjct: 61 YITENHVGYKLGEFAPTRTFKGHKGSVQKKIGK 93
>ref|NP_223355.1| 3-OXOACID COA-TRANSFERASE, SUBUNIT A [Helicobacter pylori J99]
Length = 232
Score = 23.9 bits (50), Expect = 0.61
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 50 NVHNGRVFIPVYITENHVGYKLGEFAPTRTFKGHKGSVQKKI 91
N+ G IP Y T VG + + +R F G + +++ I
Sbjct: 106 NLRAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAI 147
>ref|NP_223533.1| HOLLIDAY JUNCTION DNA HELICASE [Helicobacter pylori J99]
Length = 183
Score = 22.7 bits (47), Expect = 1.4
Identities = 13/45 (28%), Positives = 21/45 (45%), Gaps = 1/45 (2%)
Query: 40 ILPEMIGFTYNVHNGRVFIPVYITENHVGYKLGEFAPT-RTFKGH 83
I+ ++IGF N V++ +G+K E P +T K H
Sbjct: 123 IMVDLIGFFIQDENRPARNEVFLALESLGFKSAEINPVLKTLKPH 167
>ref|NP_223526.1| putative [Helicobacter pylori J99]
Length = 292
Score = 22.3 bits (46), Expect = 1.8
Identities = 10/17 (58%), Positives = 11/17 (63%)
Query: 14 HLMKKTLKAKEGKDNRP 30
H M K KA EGK+N P
Sbjct: 159 HDMPKRQKALEGKENLP 175
>ref|NP_224046.1| putative PROTEASE IV [Helicobacter pylori J99]
Length = 292
Score = 21.6 bits (44), Expect = 3.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 10 FIDDHLMKKTLKAKEGKDNRPIKTWSRRSTILPEMI 45
F+DD + L AK+ KD K +S + + ++I
Sbjct: 201 FVDDVAKARKLNAKDYKDFAEGKVFSAQKALKLKLI 236
>ref|NP_223686.1| putative [Helicobacter pylori J99]
Length = 623
Score = 21.6 bits (44), Expect = 3.0
Identities = 10/24 (41%), Positives = 14/24 (57%), Gaps = 2/24 (8%)
Query: 29 RPIKTWSRRST--ILPEMIGFTYN 50
+PI+ WSRR + IG TY+
Sbjct: 469 KPIRNWSRRKVGRRIKMEIGLTYS 492
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
J99]
Length = 605
Score = 21.6 bits (44), Expect = 3.0
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 7 KGPFIDDHLMKKTLKAKEGKDNRPIKTWSRR 37
KG I + + + + A DN PI + R
Sbjct: 216 KGEIIKERFLNQDINALANDDNEPIDAITNR 246
>ref|NP_223602.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT B [Helicobacter pylori J99]
Length = 289
Score = 21.2 bits (43), Expect = 4.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 10 FIDDHLMKKTLKAKEGKDNRPIKTWSRRSTI 40
F+D K+ +K E + NRP S + I
Sbjct: 89 FVDKESYKQRIKKYEKRTNRPSSVISGEAKI 119
>ref|NP_224053.1| putative carbon storage regulator [Helicobacter pylori J99]
Length = 76
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 1 MSRSIKKGPFIDDHLMKKTLKAKEG 25
+SR + +G IDD++ K + G
Sbjct: 4 LSRKVNEGIVIDDNIHIKVISIDRG 28
>ref|NP_223891.1| putative [Helicobacter pylori J99]
Length = 595
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 3 RSIKKGPFIDDHLMKKTLKAKEGKD 27
+ +KK +D H +K K E K+
Sbjct: 150 QDVKKAVILDKHHVKFIFKTTENKE 174
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 20.4 bits (41), Expect = 6.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 16 MKKTLKAKEGKDNRPIKTW 34
MKK + KDN P+K +
Sbjct: 100 MKKLKEILSAKDNTPLKEY 118
>ref|NP_223250.1| ENDONUCLEASE III [Helicobacter pylori J99]
Length = 214
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 11 IDDHLMKKTLKAKEGKDNRPIKTWSRRSTILPE 43
+D H+ + T + N PIKT S + +
Sbjct: 141 VDTHVFRTTHRLGLSNANTPIKTEEELSDLFKD 173
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,931
Number of Sequences: 1491
Number of extensions: 3801
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 93
length of database: 494,079
effective HSP length: 69
effective length of query: 24
effective length of database: 391,200
effective search space: 9388800
effective search space used: 9388800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)