BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645930|ref|NP_208109.1| ribosomal protein L23
(rpl23) [Helicobacter pylori 26695]
(93 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223955.1| 50S RIBOSOMAL PROTEIN L23 [Helicobacter py... 182 1e-48
ref|NP_224028.1| TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRA... 23 0.80
ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99] 23 0.80
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 23 1.4
ref|NP_223468.1| MOLYBDOPTERIN-SYNTHASE SULFURYLASE [Helico... 23 1.4
ref|NP_223915.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223498.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223422.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223546.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 21 4.0
ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pyl... 21 5.2
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 21 5.2
ref|NP_223282.1| inorganic pyrophosphatase [Helicobacter py... 21 5.2
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 21 5.2
ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 20 6.8
ref|NP_223603.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_222951.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_222843.1| PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLAS... 20 6.8
ref|NP_223860.1| putative [Helicobacter pylori J99] 20 8.9
ref|NP_223606.1| putative aldehyde dehydrogenase [Helicobac... 20 8.9
ref|NP_223258.1| putative [Helicobacter pylori J99] 20 8.9
>ref|NP_223955.1| 50S RIBOSOMAL PROTEIN L23 [Helicobacter pylori J99]
Length = 93
Score = 182 bits (461), Expect = 1e-48
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MADIMDIKSILYTEKSLGLQEKGVLVVQTAQNVTKNQLKEVFKTYFGFEPLKINSLKQEG 60
MADIMDIKSILYTEKSLGLQEKGVLVVQTAQNVTKNQLKEVFKTYFGFEPLKINSLKQEG
Sbjct: 1 MADIMDIKSILYTEKSLGLQEKGVLVVQTAQNVTKNQLKEVFKTYFGFEPLKINSLKQEG 60
Query: 61 KVKRFRGKLGQRKSFKKFYVKVPEGASIAALGA 93
KVKRFRGKLGQRKSFKKFYVKVPEGASIAALGA
Sbjct: 61 KVKRFRGKLGQRKSFKKFYVKVPEGASIAALGA 93
>ref|NP_224028.1| TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE [Helicobacter
pylori J99]
Length = 277
Score = 23.5 bits (49), Expect = 0.80
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 8 KSILYTEKSLGLQEKGVLVVQTAQNVTKNQ 37
+S+LY EK L L+E ++ + K Q
Sbjct: 214 ESVLYLEKRLTLKELEEAIISNTMKLAKRQ 243
>ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99]
Length = 206
Score = 23.5 bits (49), Expect = 0.80
Identities = 17/65 (26%), Positives = 26/65 (39%), Gaps = 3/65 (4%)
Query: 18 GLQEKGVLVVQTAQNVTKNQLKE---VFKTYFGFEPLKINSLKQEGKVKRFRGKLGQRKS 74
GL V + Q + K Q E V Y+G + + +EGK+ F + +
Sbjct: 50 GLHYNFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEI 109
Query: 75 FKKFY 79
KK Y
Sbjct: 110 LKKHY 114
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 22.7 bits (47), Expect = 1.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 10 ILYTEKSLGLQEKGVLVVQTAQNVTKNQLKEVFKTYFGFEPLKINSLKQE 59
++ T K++G G L +N+ K LK EP + + ++QE
Sbjct: 11 VIETFKAMGYAYLGDLTKSDNENINKESLKAWLIKNQKIEPERWHKIEQE 60
>ref|NP_223468.1| MOLYBDOPTERIN-SYNTHASE SULFURYLASE [Helicobacter pylori J99]
Length = 255
Score = 22.7 bits (47), Expect = 1.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 37 QLKEVFKTYFGFEPLKINSL 56
Q E K + GFE L IN+L
Sbjct: 199 QASECLKYFLGFETLLINTL 218
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 21.6 bits (44), Expect = 3.0
Identities = 11/41 (26%), Positives = 24/41 (57%), Gaps = 4/41 (9%)
Query: 3 DIMDIKSILYTEKSLGLQEKGVLVVQTAQNVTKNQLKEVFK 43
++ DI+S ++ E L+E+G+ + + +K Q +E F+
Sbjct: 40 ELADIRSKMFAESKKQLKERGIQL----KEKSKAQQQESFE 76
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 21.6 bits (44), Expect = 3.0
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 5/48 (10%)
Query: 6 DIKSILYTEKSLGLQEKGVLVVQTAQNVTKNQLKEVFKTYFGFEPLKI 53
+I ++Y ++ +EK + + T Q TK LKE T GF ++I
Sbjct: 183 EIGGVIYLKE----KEKQLFLKTTLQR-TKEVLKEAQNTLLGFSFVEI 225
>ref|NP_223422.1| putative [Helicobacter pylori J99]
Length = 182
Score = 21.6 bits (44), Expect = 3.0
Identities = 11/46 (23%), Positives = 22/46 (46%), Gaps = 5/46 (10%)
Query: 6 DIKSILYTEKSLGLQEKGVLVVQTAQNVTK-----NQLKEVFKTYF 46
D+ ++ E L Q + + + +++ + NQ EVF+ YF
Sbjct: 66 DVSLTIFKEAKLARQRRIEIEKECRESIRQLEMYQNQFNEVFERYF 111
>ref|NP_223546.1| putative [Helicobacter pylori J99]
Length = 68
Score = 21.2 bits (43), Expect = 4.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 15 KSLGLQEKGVLVVQTAQNVTKNQLKEVFKTY 45
+ LG EK + Q+ K Q+KE+ K Y
Sbjct: 13 RELGKLEKQLAKYQSKVLEIKTQMKEIKKQY 43
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 21.2 bits (43), Expect = 4.0
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 35 KNQLKEVFKTYFGFEPLKINSLKQEGKVKRFRGKLGQRKSFKKFYVKVP 83
K L E K K+ L+ + K+K +L ++ + K V+VP
Sbjct: 304 KKLLAEKEKQETELAKYKLKDLENQKKLKALEAELKKKNTKKPRVVEVP 352
>ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pylori J99]
Length = 486
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 49 EPLKINSLKQEGKVK 63
E KI+ LK+EGKV+
Sbjct: 399 EDNKIDKLKKEGKVE 413
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 20.8 bits (42), Expect = 5.2
Identities = 6/17 (35%), Positives = 14/17 (82%)
Query: 68 KLGQRKSFKKFYVKVPE 84
K+G+++++K F +K+ E
Sbjct: 161 KVGEKRAYKSFLLKLVE 177
>ref|NP_223282.1| inorganic pyrophosphatase [Helicobacter pylori J99]
Length = 173
Score = 20.8 bits (42), Expect = 5.2
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 34 TKNQLKEVFKTYFGFEPLKINSLKQEGKVKRFRGKLGQRKSFKK 77
T +++K F+TY EP K KVK F K K +K
Sbjct: 129 TLDKIKHFFETYKDLEPNK------WVKVKGFENKESAIKVLEK 166
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 20.8 bits (42), Expect = 5.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 54 NSLKQEGKVKRFRGKLGQRKSFKKF 78
N+L + FRG +GQ +S KF
Sbjct: 1263 NALNLDFSNSSFRGYVGQTQSVFKF 1287
>ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 588
Score = 20.4 bits (41), Expect = 6.8
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 11 LYTEKSLGLQEKGVLVVQTAQNV-TKNQLKEVFKTYFGFEPLKINSLKQEGKVKRFRGKL 69
LYT+ +Q +G+ V + N L Y G L+ +E + + GK
Sbjct: 133 LYTKL---IQTQGIFVRPLDKRYYPNNALASHVLGYVGVASLQDLKDDEENQYSQIVGKT 189
Query: 70 GQRKSFKKF 78
G K + KF
Sbjct: 190 GIEKEYNKF 198
>ref|NP_223603.1| putative [Helicobacter pylori J99]
Length = 204
Score = 20.4 bits (41), Expect = 6.8
Identities = 7/13 (53%), Positives = 11/13 (83%)
Query: 33 VTKNQLKEVFKTY 45
+TKNQLK +++ Y
Sbjct: 21 LTKNQLKTLYRFY 33
>ref|NP_222951.1| putative [Helicobacter pylori J99]
Length = 105
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 35 KNQLKEVFKTYFGFEPLKINSLKQEGKVK 63
K+ L + FG+ + N LK++ K K
Sbjct: 76 KDTLSKELSGNFGYSEMLFNFLKEQEKQK 104
>ref|NP_222843.1| PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE [Helicobacter pylori
J99]
Length = 449
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 6 DIKSILYTEKSLGLQEKGVLVVQTAQNVTK 35
++KS ++ G GV + T +NVT+
Sbjct: 374 EVKSFFEIHRAEGSLASGVHLEMTGENVTE 403
>ref|NP_223860.1| putative [Helicobacter pylori J99]
Length = 234
Score = 20.0 bits (40), Expect = 8.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 34 TKNQLKEVFKTYFGFEPLKINSLK 57
+KN+L FK+ P IN+++
Sbjct: 134 SKNELSRAFKSLLENPPNHINNIE 157
>ref|NP_223606.1| putative aldehyde dehydrogenase [Helicobacter pylori J99]
Length = 210
Score = 20.0 bits (40), Expect = 8.9
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 47 GFEPLKINSLKQE 59
GF+PLK+ + +E
Sbjct: 163 GFDPLKVGEILEE 175
>ref|NP_223258.1| putative [Helicobacter pylori J99]
Length = 591
Score = 20.0 bits (40), Expect = 8.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 37 QLKEVFKTYFGFEPLKI 53
QL+EVF Y F P +
Sbjct: 206 QLEEVFPKYKTFNPTSV 222
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.136 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,834
Number of Sequences: 1491
Number of extensions: 4076
Number of successful extensions: 21
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of query: 93
length of database: 494,079
effective HSP length: 69
effective length of query: 24
effective length of database: 391,200
effective search space: 9388800
effective search space used: 9388800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)