BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645933|ref|NP_208112.1| ribosomal protein S10
(rps10) [Helicobacter pylori 26695]
(104 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223958.1| 30S RIBOSOMAL PROTEIN S10 [Helicobacter py... 202 2e-54
ref|NP_223747.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Heli... 26 0.20
ref|NP_223117.1| putative [Helicobacter pylori J99] 25 0.45
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 24 1.0
ref|NP_223608.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_223040.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_223773.1| putative [Helicobacter pylori J99] 22 2.9
ref|NP_222724.1| RIBOFLAVIN SYNTHASE BETA CHAIN [Helicobact... 22 3.8
ref|NP_224147.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Heli... 22 5.0
ref|NP_223626.1| 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPH... 22 5.0
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 21 6.6
ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 21 6.6
ref|NP_223142.1| putative Outer membrane protein [Helicobac... 21 8.6
>ref|NP_223958.1| 30S RIBOSOMAL PROTEIN S10 [Helicobacter pylori J99]
Length = 104
Score = 202 bits (513), Expect = 2e-54
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MEKIRLKLKAYDHRVLDRSVVAIVEAVKRSGSEIRGPIPLPTKNKRYTVLRSPHVNKDSR 60
MEKIRLKLKAYDHRVLDRSVVAIVEAVKRSGSEIRGPIPLPTKNKRYTVLRSPHVNKDSR
Sbjct: 1 MEKIRLKLKAYDHRVLDRSVVAIVEAVKRSGSEIRGPIPLPTKNKRYTVLRSPHVNKDSR 60
Query: 61 EQFEIRVYSRLIDIISATPETVDSLMKLDLAPEVDVEVTSMETK 104
EQFEIRVYSRLIDIISATPETVDSLMKLDLAPEVDVEVTSMETK
Sbjct: 61 EQFEIRVYSRLIDIISATPETVDSLMKLDLAPEVDVEVTSMETK 104
>ref|NP_223747.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Helicobacter pylori J99]
Length = 350
Score = 26.2 bits (56), Expect = 0.20
Identities = 13/31 (41%), Positives = 19/31 (60%)
Query: 66 RVYSRLIDIISATPETVDSLMKLDLAPEVDV 96
+VY LI I T E +D +K ++ PEVD+
Sbjct: 289 KVYGSLIGGIKETQEMMDFSIKHNIYPEVDL 319
>ref|NP_223117.1| putative [Helicobacter pylori J99]
Length = 391
Score = 25.0 bits (53), Expect = 0.45
Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 1/45 (2%)
Query: 1 MEKIRLKLKAYDHRVLDRSVVAIVEAVKRSGSEIRGPIPLPTKNK 45
+E +RLKLK Y + +L + VV I E + + ++ +P+ KN+
Sbjct: 75 LEDLRLKLKNYQNTLL-KPVVFIDETHRLNKTQQEFLLPIMEKNR 118
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 23.9 bits (50), Expect = 1.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 29 RSGSEIRGPIPLPTKNKRYTVLRSP 53
RS E+R PL KNK+ L P
Sbjct: 598 RSAKELRKLTPLKDKNKKANYLEEP 622
>ref|NP_223608.1| putative [Helicobacter pylori J99]
Length = 242
Score = 23.1 bits (48), Expect = 1.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 9 KAYDHRVLDRSVVAIVEAVKRSGSEIRGPI 38
KA+ R + + +AIV+ + EI PI
Sbjct: 115 KAFKDRAVKKEYLAIVQGIIEEEREINAPI 144
>ref|NP_223040.1| putative [Helicobacter pylori J99]
Length = 293
Score = 23.1 bits (48), Expect = 1.7
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 3 KIRLKLKAYDHRVLDRSVVAIVEAVKRSGSEIRGPIPLPT 42
+IRL L + DHR++ + + + R +++ PT
Sbjct: 221 QIRLHLSSVDHRIVGEGLYGVADENAREYLQLKRENNAPT 260
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 22.3 bits (46), Expect = 2.9
Identities = 11/38 (28%), Positives = 16/38 (41%)
Query: 55 VNKDSREQFEIRVYSRLIDIISATPETVDSLMKLDLAP 92
+ KD + I YS D + +D L K+D P
Sbjct: 207 ITKDGEFDYTILSYSDFKDYNKSVMTLLDDLKKVDFPP 244
>ref|NP_222724.1| RIBOFLAVIN SYNTHASE BETA CHAIN [Helicobacter pylori J99]
Length = 156
Score = 21.9 bits (45), Expect = 3.8
Identities = 9/32 (28%), Positives = 16/32 (49%)
Query: 2 EKIRLKLKAYDHRVLDRSVVAIVEAVKRSGSE 33
EKI + ++H + DR ++ KR G +
Sbjct: 14 EKIAILTSRFNHIITDRLKEGAMDCFKRHGGD 45
>ref|NP_224147.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Helicobacter pylori J99]
Length = 365
Score = 21.6 bits (44), Expect = 5.0
Identities = 12/37 (32%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Query: 66 RVYSRLIDIISATPETVDSLMKLDLAPEVDVEVTSME 102
+VY I + T E +D +K + PE+++ VT E
Sbjct: 300 KVYGSWIGGVKETQEMMDFSVKHGIYPEIEL-VTGQE 335
>ref|NP_223626.1| 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE
[Helicobacter pylori J99]
Length = 491
Score = 21.6 bits (44), Expect = 5.0
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 16 LDRSVVAIVEAVKRSGSEIRGPIPLPTKNKRYTVLRSPHV 55
L +S +A E I G + P KN+ +++SP V
Sbjct: 310 LTQSHIAETEKYAHVTFFINGGVETPFKNENRVLIQSPKV 349
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 21.2 bits (43), Expect = 6.6
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 44 NKRYTVLRSPHVNKDSREQFEIRVYSRL 71
N R +++ H+NK +++E + + L
Sbjct: 4 NSRKNLIQKDHLNKHDIQKYEFKSMANL 31
>ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 390
Score = 21.2 bits (43), Expect = 6.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 6 LKLKAYDHRVLDRSVVAIVEAVKRSGSEI 34
LK K Y + + D ++ + + +KRS EI
Sbjct: 354 LKNKGYKNTISDIMLLRLEKIIKRSEYEI 382
>ref|NP_223142.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 186
Score = 20.8 bits (42), Expect = 8.6
Identities = 9/26 (34%), Positives = 16/26 (60%)
Query: 50 LRSPHVNKDSREQFEIRVYSRLIDII 75
++ P VN+ S++ IR YS +D +
Sbjct: 158 VKFPMVNQGSKDVGLIRYYSWYVDYV 183
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.133 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,463
Number of Sequences: 1491
Number of extensions: 2950
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 13
length of query: 104
length of database: 494,079
effective HSP length: 65
effective length of query: 39
effective length of database: 397,164
effective search space: 15489396
effective search space used: 15489396
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 42 (20.8 bits)