BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645937|ref|NP_208116.1| hypothetical protein
[Helicobacter pylori 26695]
(83 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223962.1| putative [Helicobacter pylori J99] 108 2e-26
ref|NP_223534.1| putative [Helicobacter pylori J99] 26 0.17
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 25 0.22
ref|NP_223973.1| putative [Helicobacter pylori J99] 24 0.49
ref|NP_223329.1| glycerol-3-phosphate dehydrogenase [Helico... 24 0.64
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 23 0.83
ref|NP_223364.1| putative [Helicobacter pylori J99] 23 0.83
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 23 1.1
ref|NP_222912.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223188.1| cag island protein [Helicobacter pylori J99] 23 1.4
ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99] 23 1.4
ref|NP_222778.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobact... 22 1.9
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 22 3.2
ref|NP_223879.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 22 3.2
ref|NP_222897.1| putative cardiolipin synthase [Helicobacte... 22 3.2
ref|NP_224174.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 21 4.1
ref|NP_223325.1| RIBONUCLEASE III [Helicobacter pylori J99] 21 4.1
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 21 4.1
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 21 5.4
ref|NP_223039.1| putative [Helicobacter pylori J99] 21 5.4
ref|NP_224163.1| 30S RIBOSOMAL PROTEIN S2 [Helicobacter pyl... 20 7.0
ref|NP_224090.1| putative [Helicobacter pylori J99] 20 7.0
ref|NP_222875.1| putative [Helicobacter pylori J99] 20 7.0
ref|NP_222726.1| Carbonic anhydrase [Helicobacter pylori J99] 20 7.0
ref|NP_222724.1| RIBOFLAVIN SYNTHASE BETA CHAIN [Helicobact... 20 7.0
ref|NP_223765.1| putative [Helicobacter pylori J99] 20 9.2
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 20 9.2
ref|NP_223331.1| putative [Helicobacter pylori J99] 20 9.2
ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Heli... 20 9.2
ref|NP_222746.1| putative [Helicobacter pylori J99] 20 9.2
>ref|NP_223962.1| putative [Helicobacter pylori J99]
Length = 64
Score = 108 bits (271), Expect = 2e-26
Identities = 53/64 (82%), Positives = 56/64 (86%)
Query: 20 LHDNKDLNLYLESGSKHAKLTSGANHLIIPSSPSDRKSVKNFEKELTEFIKRLRENRITH 79
+HDNKDLNLYLESGSKHAKLT +HL IPSSPSDRKSVKNFEKELTEFIK+LR NRITH
Sbjct: 1 MHDNKDLNLYLESGSKHAKLTGRVHHLTIPSSPSDRKSVKNFEKELTEFIKKLRGNRITH 60
Query: 80 ETCE 83
E
Sbjct: 61 GAFE 64
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 25.8 bits (55), Expect = 0.17
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 3 PEKATHCKEIRKILKEALHDNK 24
P K CK+I+K LK+A +NK
Sbjct: 8 PIKVERCKDIQKELKKAAAENK 29
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 25.4 bits (54), Expect = 0.22
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 45 HLIIPSSPSDRKSVKNF 61
HLII SP+ K++KNF
Sbjct: 3 HLIIVESPAKAKTIKNF 19
>ref|NP_223973.1| putative [Helicobacter pylori J99]
Length = 253
Score = 24.3 bits (51), Expect = 0.49
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 54 DRKSVKNFEKELTEFIKRLRENRITHETC 82
D ++ + E I L ENRI H C
Sbjct: 142 DELHIRGDSERFWELIVTLNENRIVHNAC 170
>ref|NP_223329.1| glycerol-3-phosphate dehydrogenase [Helicobacter pylori J99]
Length = 433
Score = 23.9 bits (50), Expect = 0.64
Identities = 14/53 (26%), Positives = 24/53 (44%)
Query: 1 MNPEKATHCKEIRKILKEALHDNKDLNLYLESGSKHAKLTSGANHLIIPSSPS 53
M EK ++ + + + D K L E G+ H +L + L P++PS
Sbjct: 365 MQTEKTEFSLKVGLLRAKEIMDTKARILSAECGACHMQLNNALKSLDDPNTPS 417
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 23.5 bits (49), Expect = 0.83
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 10 KEIRKILKEALHDNKDLNL 28
KEI ++LK+ + DN L++
Sbjct: 573 KEIERLLKQKIEDNNQLDM 591
>ref|NP_223364.1| putative [Helicobacter pylori J99]
Length = 308
Score = 23.5 bits (49), Expect = 0.83
Identities = 19/77 (24%), Positives = 37/77 (47%), Gaps = 4/77 (5%)
Query: 7 THCKEIRKILKEALHDNKDLNLYLESGSKHAKLTSGA--NHLIIPSSPSDRKSVKNFE-- 62
+H ++R L+ L+ K +N Y + G + I ++R++ K F+
Sbjct: 122 SHALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDA 181
Query: 63 KELTEFIKRLRENRITH 79
K+L+EF+ L +N+ H
Sbjct: 182 KDLSEFLSSLSKNKKIH 198
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 23.1 bits (48), Expect = 1.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 58 VKNFEKELTEFIKRLREN 75
VKN+E++L E +REN
Sbjct: 796 VKNYERDLDEIPTEVREN 813
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 23.1 bits (48), Expect = 1.1
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 4 EKATHC-----KEIRKILKEALHDN 23
E ATH KE RK LKE H N
Sbjct: 651 EPATHLSVPARKEFRKFLKEYAHKN 675
>ref|NP_223188.1| cag island protein [Helicobacter pylori J99]
Length = 219
Score = 22.7 bits (47), Expect = 1.4
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 22 DNKDLNLYLESGSKHAKLTSGAN---HLIIPSSPSDRKSVKNFEKELTEFIKRLRENRIT 78
+N + +ESG A N + I + ++RK K+ EKE E + ++ + +I
Sbjct: 76 ENTPIMEKVESGRGGAYACKNCNRKFYFIDLAKQNERK--KDLEKEKKELLNKIEKQKIK 133
Query: 79 H 79
H
Sbjct: 134 H 134
>ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99]
Length = 448
Score = 22.7 bits (47), Expect = 1.4
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 30 LESGSKHAKLTSGANH----LIIPSSPSDRKSVKNFE 62
LE+ + +A+L N+ I+P PS + S+K +E
Sbjct: 401 LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYE 437
>ref|NP_222778.1| putative [Helicobacter pylori J99]
Length = 189
Score = 22.7 bits (47), Expect = 1.4
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 15 ILKEALHDNKDLNLYLESGSKHA-KLTSGANHLIIPS------SPSDRKSVKNFEKELTE 67
+L EAL K LNL L+ +H+ L +G L+ + P S+K + + E
Sbjct: 90 VLVEALEGFKGLNLSLKIEDRHSNSLGNGVQKLLTNADLGSNHKPIVIDSMKTYHQSQQE 149
Query: 68 FIKRLR 73
KR R
Sbjct: 150 KYKRER 155
>ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 22.3 bits (46), Expect = 1.9
Identities = 14/49 (28%), Positives = 26/49 (52%), Gaps = 9/49 (18%)
Query: 10 KEIRKILKEALHDNKDLNLYLESGSKHAKLTSGANHLIIPSSPSDRKSV 58
KE+ ++ KE L K L + + ++L + L+IP P+D K++
Sbjct: 71 KELSELAKEEL---KILEI------QKSELETAIKQLLIPKDPNDDKNI 110
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 21.6 bits (44), Expect = 3.2
Identities = 10/17 (58%), Positives = 11/17 (63%)
Query: 15 ILKEALHDNKDLNLYLE 31
+LKEAL NKD L E
Sbjct: 27 VLKEALQSNKDRYLLKE 43
>ref|NP_223879.1| putative [Helicobacter pylori J99]
Length = 190
Score = 21.6 bits (44), Expect = 3.2
Identities = 11/28 (39%), Positives = 16/28 (56%), Gaps = 1/28 (3%)
Query: 55 RKSVKNFEKELTEFIKRLRENRITHETC 82
++ KN ++E EF+KR N I TC
Sbjct: 79 QRKAKN-KREALEFLKRQNGNEIEVLTC 105
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 21.6 bits (44), Expect = 3.2
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 53 SDRKSVKNFEKELTE 67
+D K KNFE++LT+
Sbjct: 532 ADLKDYKNFEEKLTD 546
>ref|NP_222897.1| putative cardiolipin synthase [Helicobacter pylori J99]
Length = 502
Score = 21.6 bits (44), Expect = 3.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 45 HLIIPSSPSDRKSVKNFEKELTEFIKRLRE 74
H IP S D FEK++ +FI+R ++
Sbjct: 249 HEKIPISAED---ANEFEKKVNDFIERFQK 275
>ref|NP_224174.1| putative [Helicobacter pylori J99]
Length = 312
Score = 21.2 bits (43), Expect = 4.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 56 KSVKNFEKELTEFIKRLRENRITHE 80
K +KN EK+ K + R T+E
Sbjct: 53 KEIKNIEKQHALITKEFEKKRETNE 77
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 21.2 bits (43), Expect = 4.1
Identities = 7/24 (29%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 49 PSSPSDRKSVKNFEKELTEFIKRL 72
P P +++++NFEKE+ ++ +
Sbjct: 17 PQEPK-KETIENFEKEINSLLENV 39
>ref|NP_223325.1| RIBONUCLEASE III [Helicobacter pylori J99]
Length = 239
Score = 21.2 bits (43), Expect = 4.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 70 KRLRENRITHETCE 83
KRL E +TH++C+
Sbjct: 32 KRLLEQALTHKSCK 45
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 21.2 bits (43), Expect = 4.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 30 LESGSKHAKLTSGANH 45
LE+G KH +T+ NH
Sbjct: 64 LETGIKHGTITALKNH 79
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 20.8 bits (42), Expect = 5.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 22 DNKDLNLYLESGSKHAKLTSGAN 44
DN D+ LY + K ++LT N
Sbjct: 2981 DNVDVGLYARAFIKKSELTFSVN 3003
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 20.8 bits (42), Expect = 5.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 53 SDRKSVKNFEK 63
S+RK KNFEK
Sbjct: 122 SNRKDAKNFEK 132
>ref|NP_224163.1| 30S RIBOSOMAL PROTEIN S2 [Helicobacter pylori J99]
Length = 264
Score = 20.4 bits (41), Expect = 7.0
Identities = 11/35 (31%), Positives = 19/35 (53%), Gaps = 3/35 (8%)
Query: 48 IPSSPSDRKSVKNFEKELTEFI---KRLRENRITH 79
IP + +S++ F KE++E I + L + I H
Sbjct: 198 IPGNDDAIRSIRLFCKEMSEAILEGRELMQEEIVH 232
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 20.4 bits (41), Expect = 7.0
Identities = 6/18 (33%), Positives = 13/18 (71%)
Query: 63 KELTEFIKRLRENRITHE 80
++ TEF++ + EN +H+
Sbjct: 548 EDTTEFLREITENFYSHD 565
>ref|NP_222875.1| putative [Helicobacter pylori J99]
Length = 87
Score = 20.4 bits (41), Expect = 7.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 54 DRKSVKNFEKELTEF 68
DR SV+N EK L E+
Sbjct: 72 DRLSVENLEKWLVEW 86
>ref|NP_222726.1| Carbonic anhydrase [Helicobacter pylori J99]
Length = 221
Score = 20.4 bits (41), Expect = 7.0
Identities = 9/21 (42%), Positives = 12/21 (56%)
Query: 60 NFEKELTEFIKRLRENRITHE 80
NFE E I+ + RI+HE
Sbjct: 199 NFESHFFEPIEETIKQRISHE 219
>ref|NP_222724.1| RIBOFLAVIN SYNTHASE BETA CHAIN [Helicobacter pylori J99]
Length = 156
Score = 20.4 bits (41), Expect = 7.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 28 LYLESGSKHAKLTSGANHLI 47
L L+ K A LTS NH+I
Sbjct: 8 LQLQGNEKIAILTSRFNHII 27
>ref|NP_223765.1| putative [Helicobacter pylori J99]
Length = 144
Score = 20.0 bits (40), Expect = 9.2
Identities = 7/19 (36%), Positives = 12/19 (62%)
Query: 65 LTEFIKRLRENRITHETCE 83
++EF L + I H+TC+
Sbjct: 110 VSEFYSSLIQQIIPHDTCD 128
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 20.0 bits (40), Expect = 9.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 44 NHLIIPSSPSDRKSVKNFE 62
+HL S+P + K VK F+
Sbjct: 479 HHLENKSAPEETKEVKEFK 497
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 20.0 bits (40), Expect = 9.2
Identities = 9/34 (26%), Positives = 17/34 (49%)
Query: 41 SGANHLIIPSSPSDRKSVKNFEKELTEFIKRLRE 74
+ A + ++P+ DR +NF K+ + L E
Sbjct: 266 ANAVYNVMPTKLGDRNYWENFAKKTGNIARTLNE 299
>ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Helicobacter pylori J99]
Length = 474
Score = 20.0 bits (40), Expect = 9.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 1 MNPEKATHCKEIRKILKEALHDNKDLNLYLESG 33
M + + I K+++E L +N D L +SG
Sbjct: 409 MGLSQVNDTEAIVKVIEEVLKNNADKVLEYKSG 441
>ref|NP_222746.1| putative [Helicobacter pylori J99]
Length = 175
Score = 20.0 bits (40), Expect = 9.2
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 34 SKHAKLTSGANHLIIPSSPSDRKSVKNFEKELTEF 68
+K K + + + P D+KSV + E T F
Sbjct: 53 NKEVKTLARDVYFVQTYDPKDQKSVTVYRNEDTRF 87
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.129 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,169
Number of Sequences: 1491
Number of extensions: 3903
Number of successful extensions: 33
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of query: 83
length of database: 494,079
effective HSP length: 59
effective length of query: 24
effective length of database: 406,110
effective search space: 9746640
effective search space used: 9746640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 40 (20.0 bits)