BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645939|ref|NP_208118.1| hypothetical protein
[Helicobacter pylori 26695]
(125 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223964.1| putative [Helicobacter pylori J99] 240 1e-65
ref|NP_223568.1| putative Outer membrane protein [Helicobac... 24 1.5
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 23 3.3
ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylor... 23 3.3
ref|NP_222863.1| ENOLASE [Helicobacter pylori J99] 23 3.3
ref|NP_223381.1| putative Outer membrane protein [Helicobac... 22 4.3
ref|NP_223176.1| putative [Helicobacter pylori J99] 22 4.3
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 5.6
ref|NP_223516.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_223428.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_223608.1| putative [Helicobacter pylori J99] 22 7.3
ref|NP_223162.1| putative paralog of HpaA [Helicobacter pyl... 21 9.5
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 21 9.5
>ref|NP_223964.1| putative [Helicobacter pylori J99]
Length = 125
Score = 240 bits (612), Expect = 1e-65
Identities = 121/125 (96%), Positives = 122/125 (96%)
Query: 1 MKKLAALFLVSVLGVMGLNAWEQTLKANDLEVKIKSVGNPIKGDNTFILSPTLKGKALEK 60
MKKLAALFLVS LGVM LNAWEQTLKANDLEVKIKSVGNPIKGDNTF+LSPTLKGKALEK
Sbjct: 1 MKKLAALFLVSALGVMSLNAWEQTLKANDLEVKIKSVGNPIKGDNTFVLSPTLKGKALEK 60
Query: 61 AIVRVQFMMPEMPGMPAMKEMAQVSEKNGLYEAKTNLSMNGTWQVRVDIKSKEGQVYRAK 120
AIVRVQFMMPEMPGMPAMKEMAQVSEKNGLYEAKTNLSMNGTWQVRVDIKSKEGQVYR K
Sbjct: 61 AIVRVQFMMPEMPGMPAMKEMAQVSEKNGLYEAKTNLSMNGTWQVRVDIKSKEGQVYRTK 120
Query: 121 TSLDL 125
TSLDL
Sbjct: 121 TSLDL 125
>ref|NP_223568.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 514
Score = 23.9 bits (50), Expect = 1.5
Identities = 11/42 (26%), Positives = 24/42 (56%)
Query: 82 AQVSEKNGLYEAKTNLSMNGTWQVRVDIKSKEGQVYRAKTSL 123
+Q++ K G+Y ++ + + QV+V++ K + +R SL
Sbjct: 44 SQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSVSL 85
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 22.7 bits (47), Expect = 3.3
Identities = 15/46 (32%), Positives = 24/46 (51%), Gaps = 1/46 (2%)
Query: 9 LVSVLGVMGLNAWEQTLKANDLEVKIKSVGNPIKGDNTFILSPTLK 54
L + LG++ L+ + Q + + K +S+ P K DN IL LK
Sbjct: 946 LANQLGILKLSNFNQNITLTYSDEKKESLKAPSKDDND-ILETLLK 990
>ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 576
Score = 22.7 bits (47), Expect = 3.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 44 DNTFILSPTLKGKALEKA 61
DN F+LSPTL+ E A
Sbjct: 101 DNDFVLSPTLEENITEIA 118
>ref|NP_222863.1| ENOLASE [Helicobacter pylori J99]
Length = 426
Score = 22.7 bits (47), Expect = 3.3
Identities = 11/42 (26%), Positives = 21/42 (49%), Gaps = 2/42 (4%)
Query: 35 KSVGNPIK--GDNTFILSPTLKGKALEKAIVRVQFMMPEMPG 74
K +G I+ GD+ F+ + ++ K +EK + + P G
Sbjct: 302 KELGRQIQLVGDDLFVTNASILQKGIEKNVANAILIKPNQIG 343
>ref|NP_223381.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 305
Score = 22.3 bits (46), Expect = 4.3
Identities = 11/23 (47%), Positives = 16/23 (68%)
Query: 2 KKLAALFLVSVLGVMGLNAWEQT 24
K+L AL ++ LGV+ NA E+T
Sbjct: 8 KRLKALIFLASLGVLWGNAAEKT 30
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 22.3 bits (46), Expect = 4.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 26 KANDLEVKIKSVGNPIKGDNTFILSPTLKGKALEKA 61
+ N E+K +++ P K + +PTL+ K +KA
Sbjct: 257 RENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKA 292
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 21.9 bits (45), Expect = 5.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 29 DLEVKIKSVGNPIK 42
DL KI+SVG P+K
Sbjct: 971 DLRDKIESVGTPLK 984
>ref|NP_223516.1| putative [Helicobacter pylori J99]
Length = 218
Score = 21.9 bits (45), Expect = 5.6
Identities = 9/17 (52%), Positives = 12/17 (69%)
Query: 76 PAMKEMAQVSEKNGLYE 92
P +KEM+ + E N LYE
Sbjct: 144 PILKEMSALQEVNLLYE 160
>ref|NP_223428.1| putative [Helicobacter pylori J99]
Length = 363
Score = 21.9 bits (45), Expect = 5.6
Identities = 13/40 (32%), Positives = 20/40 (49%)
Query: 24 TLKANDLEVKIKSVGNPIKGDNTFILSPTLKGKALEKAIV 63
TLK D+ + VG P + NT ++ +G A + A V
Sbjct: 262 TLKKEDILLIKSPVGYPARAINTGVIKRIEEGNAPKIACV 301
>ref|NP_223608.1| putative [Helicobacter pylori J99]
Length = 242
Score = 21.6 bits (44), Expect = 7.3
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 23 QTLKANDLEVKIKSVGNPIKGDNTFILSPT 52
+T + + + V +K + +PI GD + P+
Sbjct: 184 KTGRTHQIRVHLKHINHPIIGDTLYNNEPS 213
>ref|NP_223162.1| putative paralog of HpaA [Helicobacter pylori J99]
Length = 282
Score = 21.2 bits (43), Expect = 9.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 2 KKLAALFLVSVLGVMGLNAWEQTLKAND 29
K L AL L SVL +N +T K ND
Sbjct: 15 KMLVALGLSSVLIGCAMNPSAETKKPND 42
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 21.2 bits (43), Expect = 9.5
Identities = 9/41 (21%), Positives = 20/41 (47%)
Query: 59 EKAIVRVQFMMPEMPGMPAMKEMAQVSEKNGLYEAKTNLSM 99
E + ++ M+P + + K++ ++ KN L K L +
Sbjct: 645 EMGLTNMKVMIPFLRTIEEGKKVLEILRKNNLESGKNGLEI 685
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.131 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,943
Number of Sequences: 1491
Number of extensions: 4620
Number of successful extensions: 20
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 13
length of query: 125
length of database: 494,079
effective HSP length: 68
effective length of query: 57
effective length of database: 392,691
effective search space: 22383387
effective search space used: 22383387
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)