BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645943|ref|NP_208122.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(115 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223968.1| putative [Helicobacter pylori J99] 226 1e-61
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 22 3.6
ref|NP_223042.1| CTP SYNTHASE [Helicobacter pylori J99] 22 3.6
ref|NP_224031.1| UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCT... 22 4.7
ref|NP_223960.1| putative [Helicobacter pylori J99] 22 4.7
ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 22 4.7
ref|NP_223168.1| putative transporter [Helicobacter pylori ... 22 4.7
ref|NP_223078.1| putative Outer membrane protein [Helicobac... 22 6.1
>ref|NP_223968.1| putative [Helicobacter pylori J99]
Length = 118
Score = 226 bits (576), Expect = 1e-61
Identities = 109/114 (95%), Positives = 114/114 (99%)
Query: 1 MLMHSILIILVIILTTYFTRIWPFMVFNAKNPPNDFVRYLGRALSCSVIGMLVIYCFKDI 60
MLMHSILI+LVII+TTYFTRIWPFMVFN+KNPPNDFVRYLGRALSCSVIGMLV+YCFKDI
Sbjct: 1 MLMHSILILLVIIITTYFTRIWPFMVFNSKNPPNDFVRYLGRALSCSVIGMLVVYCFKDI 60
Query: 61 HILKPPYGINEITAFLSVILLHRIFKVFVLSITLPTILYMVLVQSHALEKAFFN 114
H+LKPPYGINEITAFLSVILLHRIFKVFVLSITLPTILYMVLVQSHALEKAFFN
Sbjct: 61 HVLKPPYGINEITAFLSVILLHRIFKVFVLSITLPTILYMVLVQSHALEKAFFN 114
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 22.3 bits (46), Expect = 3.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 45 SCSVIGMLVIYCFKDIHIL 63
SC + ++V + FKD HIL
Sbjct: 81 SCDGVLVVVAHFFKDAHIL 99
>ref|NP_223042.1| CTP SYNTHASE [Helicobacter pylori J99]
Length = 538
Score = 22.3 bits (46), Expect = 3.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 40 LGRALSCSVIGMLVIYCFKDIHILK-PPY 67
LG+ +S S I L+ +C + ILK PY
Sbjct: 17 LGKGISSSSIATLLQHCNYQVSILKIDPY 45
>ref|NP_224031.1| UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE [Helicobacter pylori
J99]
Length = 259
Score = 21.9 bits (45), Expect = 4.7
Identities = 16/35 (45%), Positives = 18/35 (50%), Gaps = 6/35 (17%)
Query: 30 KNPPNDFVRYLGRALSCSVIGMLVIYCFKDIHILK 64
KNPPND Y GR L +G L YC K + K
Sbjct: 187 KNPPND---YAGRLL--EGVG-LRGYCLKRVGFAK 215
>ref|NP_223960.1| putative [Helicobacter pylori J99]
Length = 192
Score = 21.9 bits (45), Expect = 4.7
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 26 VFNAKNPPNDFV 37
+F+ KNPPN +V
Sbjct: 41 LFDKKNPPNQYV 52
>ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 21.9 bits (45), Expect = 4.7
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 4 HSILIILVIILTTYFTRIWPFMVFNAKN 31
++IL+ L+II YF + +VFN+K+
Sbjct: 300 YNILMFLLIIFFAYF---YSSIVFNSKD 324
>ref|NP_223168.1| putative transporter [Helicobacter pylori J99]
Length = 442
Score = 21.9 bits (45), Expect = 4.7
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 55 YCFKDIHILKPPYGINEITAFLSVILLHRIFKVFVLSITLPTILYMVLVQSHALE 109
Y F IL P I +F +V+L ++ +FV++ LP L +Q L+
Sbjct: 83 YPFTSFFILGGPL----ILSFYAVVLGWVLYYLFVVTFDLPKDLEQAKMQFSMLQ 133
>ref|NP_223078.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 200
Score = 21.6 bits (44), Expect = 6.1
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 24 FMVFNAKNPPNDFVRYLGRALSCS 47
FMV AKNP N + + G L+ +
Sbjct: 97 FMVAYAKNPINRWAFFFGLQLAAN 120
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.337 0.150 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,799
Number of Sequences: 1491
Number of extensions: 4433
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 8
length of query: 115
length of database: 494,079
effective HSP length: 67
effective length of query: 48
effective length of database: 394,182
effective search space: 18920736
effective search space used: 18920736
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 43 (21.2 bits)