BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645947|ref|NP_208126.1| hypothetical protein
[Helicobacter pylori 26695]
(224 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223530.1| putative [Helicobacter pylori J99] 58 2e-10
ref|NP_223790.1| putative [Helicobacter pylori J99] 42 2e-05
ref|NP_224098.1| putative [Helicobacter pylori J99] 26 0.99
ref|NP_223270.1| putative [Helicobacter pylori J99] 26 0.99
ref|NP_223591.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter p... 25 1.7
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 25 2.2
ref|NP_223701.1| D-3-PHOSPHOGLYCERATE DEHYDROGENASE [Helico... 24 2.9
ref|NP_223452.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C... 24 2.9
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 24 3.8
ref|NP_223659.1| putative [Helicobacter pylori J99] 24 3.8
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 24 3.8
ref|NP_223922.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_223154.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_223724.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_223715.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 23 8.4
ref|NP_224110.1| putative [Helicobacter pylori J99] 23 8.4
ref|NP_224027.1| putative [Helicobacter pylori J99] 23 8.4
ref|NP_223109.1| putative [Helicobacter pylori J99] 23 8.4
>ref|NP_223530.1| putative [Helicobacter pylori J99]
Length = 243
Score = 58.2 bits (139), Expect = 2e-10
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 12/174 (6%)
Query: 50 NDEELYRIFFYDCKPLK-KKAHYPYTQKALDLSKSPTYRER----EELHEHLISKPCLAL 104
+DE + RI+FY P + A + L K+P + ++ E L S
Sbjct: 42 DDEWISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKW 101
Query: 105 RLGYLDEKNARWVIRDQEK-EKKLFNRRISIEEFQNDDFIYHA--KQKGVDIKIGLDIAT 161
Y D +N + + ++ E +L +++ + D Y A +QK VD+ +GLDI
Sbjct: 102 EKIYSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGS-YRALLEQKQVDMLMGLDIQR 160
Query: 162 LALKKLVQKIVLISGDSDFVPASKLARVEGIIFTLDPMGNH---IREDLKEHID 212
+A KK+ +I++ S D+D +PA KLAR EG+ + + N + +DLK + D
Sbjct: 161 IAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSD 214
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 41.6 bits (96), Expect = 2e-05
Identities = 48/197 (24%), Positives = 87/197 (43%), Gaps = 34/197 (17%)
Query: 30 NPKKLAHHIHTYCLKHINKKNDEELYRIFFYDCKPLKKKAHYPYTQKALDLS----KSPT 85
NP++L I ++ + +EEL RI+FY +P + + K +L K+P
Sbjct: 60 NPEQLLALIRSFL------EPEEELKRIYFYVSEPFTEVEPRIKSNKKEELEEYKEKNPK 113
Query: 86 -YRER-------EELHEHLISKPCLALRLGYLDEKNARWVIRDQEKEKKLFNRRISIEEF 137
Y E+ + + + + + LR+G R++ +D K++++
Sbjct: 114 EYEEKVNKSGIIQSFNHAIAQQNQVKLRVG-----RVRFMFKDMPKDQRVHGG------L 162
Query: 138 QNDDFIYHA--KQKGVDIKIGLDIATLALKKLVQKIVLISGDSDFVPASKLARVEG---I 192
+ + I H +QK +D + DI L K + +VL S D+DFVP + A +G
Sbjct: 163 EAEILIPHLELRQKQIDALLAHDITKLYCTKPLGCVVLFSKDTDFVPVLEAAWEKGFEVF 222
Query: 193 IFTLDPMGNHIREDLKE 209
I + N + DLK+
Sbjct: 223 IANIQESPNSVPSDLKK 239
>ref|NP_224098.1| putative [Helicobacter pylori J99]
Length = 365
Score = 25.8 bits (55), Expect = 0.99
Identities = 18/67 (26%), Positives = 34/67 (49%), Gaps = 4/67 (5%)
Query: 119 RDQEKEKKLFNRRISIEEFQNDDFIYHAK---QKGVDIKIGLDIATLALKKLVQKIVLIS 175
+D E++ K+ R++ + + N +++ K + + LD TLA K LV+ LIS
Sbjct: 97 KDLERKIKM-GRKVDLPFYYNAEYVLVGKTLKNAFLQTALTLDAKTLATKALVRDSNLIS 155
Query: 176 GDSDFVP 182
+ +P
Sbjct: 156 AKAQAMP 162
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 25.8 bits (55), Expect = 0.99
Identities = 19/69 (27%), Positives = 34/69 (48%), Gaps = 12/69 (17%)
Query: 103 ALRLGYL-DEKNARWVIRDQEKEKKLFNRRISIEEFQNDDFIYHAKQKGVDIKIGLDIAT 161
++ LG L +EKN + +QEK+++L+ + + I A+ K K LD A
Sbjct: 368 SIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDI-----------ARAKIESSKASLDAAN 416
Query: 162 LALKKLVQK 170
L+ + +K
Sbjct: 417 LSFANIKRK 425
>ref|NP_223591.1| putative [Helicobacter pylori J99]
Length = 291
Score = 25.0 bits (53), Expect = 1.7
Identities = 16/45 (35%), Positives = 24/45 (52%), Gaps = 3/45 (6%)
Query: 124 EKKLFNRRISIEEFQNDD--FIYHAKQKGVDIKIGLDIATLALKK 166
E+K N +I IE+ + DD + +Q+ + IGL T LKK
Sbjct: 90 ERKPHNEKIRIEQIKRDDLYIVLDGQQRLTSLYIGLK-GTRTLKK 133
>ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter pylori J99]
Length = 567
Score = 25.0 bits (53), Expect = 1.7
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 60 YDCKPLKKKAHYPYTQKALDLSKSPTYREREELHEHL 96
Y +PLK+ A YP +LD + +++ + + EHL
Sbjct: 74 YPLEPLKEHAFYPKIHSSLD--QKTYFKQFKAVKEHL 108
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 24.6 bits (52), Expect = 2.2
Identities = 22/86 (25%), Positives = 39/86 (44%), Gaps = 9/86 (10%)
Query: 86 YREREELHEHLISKPCLALRLGYLDEKNARWVIRDQEKEKKLFNRRISIEEFQNDDFIYH 145
++ RE L E LI P +EK+ ++ R +++ + + N + DFI +
Sbjct: 324 HKAREGLRERLILVP---------EEKHEQYKERLEKEIEVITNMKFPGYMLIVWDFIRY 374
Query: 146 AKQKGVDIKIGLDIATLALKKLVQKI 171
AK+ G+ + G A +L KI
Sbjct: 375 AKEMGIPVGPGRGSAAGSLVAFALKI 400
>ref|NP_223701.1| D-3-PHOSPHOGLYCERATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 524
Score = 24.3 bits (51), Expect = 2.9
Identities = 14/62 (22%), Positives = 28/62 (44%), Gaps = 7/62 (11%)
Query: 146 AKQKGVDIKIGLDIATLALKKLV-------QKIVLISGDSDFVPASKLARVEGIIFTLDP 198
AK++G++IK+ L + K ++ + +SG KL ++G ++P
Sbjct: 390 AKERGIEIKVSLKESASPYKNMLSLTLNAANGAISVSGTVFEEDILKLTEIDGFHIDIEP 449
Query: 199 MG 200
G
Sbjct: 450 KG 451
>ref|NP_223452.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C [Helicobacter pylori
J99]
Length = 158
Score = 24.3 bits (51), Expect = 2.9
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 106 LGYLDEKNARWVIRDQEKEKK----LFNRRISIEEFQNDDFIYHAKQKGVDIKIGLDIAT 161
L +L+E+N ++ +KE L + RIS+ + D I H +KG ++ +
Sbjct: 3 LTHLNEENQPKMVDIGDKETTERIALASGRISMNKEAYDAIINHGVKKGPVLQTAIIAGI 62
Query: 162 LALKKLVQKI 171
+A KK + I
Sbjct: 63 MAAKKTSELI 72
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 23.9 bits (50), Expect = 3.8
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 19/113 (16%)
Query: 30 NPKKLAHHIHTYCLKHINKKNDEELYRIFFY----DCKPLKKKAHYPYTQKALDLSKSPT 85
N K LA +++ + KH K+D+ + ++F + P K + K D K +
Sbjct: 652 NEKGLALNLYAFLEKHF--KDDKRMALVYFKLLENEKDPKSVKIYATSLLKLQDAYKDYS 709
Query: 86 YREREELHEHLISKPCLALRLGYLDEKNARWVIRDQEKEKKLFNRRISIEEFQ 138
Y E AL Y K+ + E KL NRR+S+E+ Q
Sbjct: 710 YTPFGEF----------ALIDAYRTTKDYSKAL---ETLDKLLNRRLSLEDHQ 749
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 23.9 bits (50), Expect = 3.8
Identities = 20/88 (22%), Positives = 37/88 (41%), Gaps = 5/88 (5%)
Query: 44 KHINKKNDEELYRIF-FYDCKPLKKKAHYPYTQKALDLSKSPTYREREELHEHLISKPCL 102
+H+ + ELY + FY + KK+ H + A+ + + + L K L
Sbjct: 332 EHLKNMSKHELYELLGFYQKELDKKQNHSAFKNFAILNGLDRDFERETKGYSVLKKKEML 391
Query: 103 ALRLGYLD----EKNARWVIRDQEKEKK 126
+L +LD +KN+ ++ E K
Sbjct: 392 LNKLKHLDKRLLDKNSHLLLAQLRNEVK 419
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 23.9 bits (50), Expect = 3.8
Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query: 57 IFFYDCKPLKKKAHYPYTQKALDLSKSPTYREREELHEHLISKPCLALRLGYLDEKNARW 116
+FFY+ LKK + + + T +++ E E +I++ YL +K
Sbjct: 342 VFFYE-NDLKKPLDNAPLESVVFVQGLGTLKDKME-RESIIAQ--------YLTQKYISS 391
Query: 117 VIRDQEKEKKLFNRRISIEEFQNDDFIYHAKQKGVDIKIGLDIATLALKKLVQKIVLISG 176
+ EK +L +R I I + D + + +++ G+ ALK+ ++V +S
Sbjct: 392 LSMPLEKALELISRAIQIAKA---DLLSEVVYEFSELQ-GIMGYYYALKQNENELVALSV 447
Query: 177 DSDFVPASKLARVEGIIFT 195
++PAS+ A + +F+
Sbjct: 448 KEQYLPASENAPLPSSVFS 466
>ref|NP_223922.1| putative [Helicobacter pylori J99]
Length = 352
Score = 23.5 bits (49), Expect = 4.9
Identities = 25/121 (20%), Positives = 50/121 (40%), Gaps = 11/121 (9%)
Query: 66 KKKAHYPYTQKALDLSKSPTYREREELHEHLISKPCLALRLGYLDEKNARWVIRDQEKEK 125
K K + QK + ++S + E + LI C L K W ++D+ KE+
Sbjct: 121 KTKIYSWLYQKRVRQNRSLCLKTEYEYNLDLIHAFCKDYDLPNAQLKKIAWKLKDKSKER 180
Query: 126 KLFNRRISIEEFQNDDFIY---HAKQKG----VDIKIGLDIATLALKKLVQKIVLISGDS 178
+ +++ N D ++ H G + +++ + +KL +I+LI G
Sbjct: 181 SIIASKLN----ANVDLLWIGVHMHSGGSSPVLPASHFIELIAILHEKLSCEIILICGPG 236
Query: 179 D 179
+
Sbjct: 237 E 237
>ref|NP_223154.1| putative [Helicobacter pylori J99]
Length = 184
Score = 23.5 bits (49), Expect = 4.9
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 75 QKALDLSKSPTYREREELHEHLISKPCLALRLGYLDEKNARWVIRDQEKEKKLFN 129
Q+ L K PT +H L + + + + E + W+ R Q + + +FN
Sbjct: 115 QRRLITDKIPTI----VVHFDLFNGQVACVEISKIKENDLNWITRQQMEGQSVFN 165
>ref|NP_223724.1| putative [Helicobacter pylori J99]
Length = 226
Score = 23.1 bits (48), Expect = 6.4
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 1 MSKKVAILVDGDFFIRCYKSHLKKQPEDLNPKKLAH-HIHTYCLKHINKKN 50
++K+ + ++G+ +I Y+S K L+ + L ++TY I KK+
Sbjct: 8 LAKEPTLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEIAKKH 58
>ref|NP_223715.1| putative [Helicobacter pylori J99]
Length = 174
Score = 23.1 bits (48), Expect = 6.4
Identities = 14/61 (22%), Positives = 27/61 (43%), Gaps = 4/61 (6%)
Query: 112 KNARWVIRDQEKEKKLFNRRISIEEFQNDDFI----YHAKQKGVDIKIGLDIATLALKKL 167
KN +V+ D + K N + + F+ND I + K++G + L + K+
Sbjct: 75 KNTPFVLLDADNRVKFSNIGVFVASFKNDALIKTPYFALKKQGFYLTDSAPTNRLGVSKI 134
Query: 168 V 168
+
Sbjct: 135 I 135
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 22.7 bits (47), Expect = 8.4
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 14 FIRCYKSHLKKQPEDLNPKKLAHHIHTYCLKHINKKNDEELYRIFFYDCKPLKKKAHYPY 73
FI S+L + + L ++ L+ + KK +E YR + K K H Y
Sbjct: 382 FINGVNSYLSENEKPAKLALLFEKLYQQKLEEVLKKPLDENYRAYLERTKDAILKVHGGY 441
Query: 74 TQKA 77
K+
Sbjct: 442 FAKS 445
>ref|NP_224110.1| putative [Helicobacter pylori J99]
Length = 306
Score = 22.7 bits (47), Expect = 8.4
Identities = 16/60 (26%), Positives = 33/60 (54%), Gaps = 1/60 (1%)
Query: 111 EKNARWVIRDQEKEKKLFNRRISIEEFQNDDFIYHAKQKGVDIKIGLDIATLALKKLVQK 170
+K+ + I+ EK++KL I + +FI+ ++KGV ++ L AL++ ++K
Sbjct: 192 DKSIQEKIKKIEKQEKLLPGTIPSIKAMIVEFIFACEKKGVK-QVALQDIYQALEERIKK 250
>ref|NP_224027.1| putative [Helicobacter pylori J99]
Length = 113
Score = 22.7 bits (47), Expect = 8.4
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 13/56 (23%)
Query: 78 LDLSKSPTYREREELHEHLISKPCLALR---------LG----YLDEKNARWVIRD 120
+DLSK+P E + L +K L+L LG +DE N W+I D
Sbjct: 23 IDLSKTPYLVEDVIIATTLANKHALSLLDALKNTLKPLGEVFYQIDESNGEWIILD 78
>ref|NP_223109.1| putative [Helicobacter pylori J99]
Length = 294
Score = 22.7 bits (47), Expect = 8.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 42 CLKHINKKNDEELYRIFFYDCKPLKKKAHY 71
C+K IN KN +EL+ I +P + +A Y
Sbjct: 180 CIK-INSKNKDELFLIANMVAQPKEGRATY 208
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.140 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 256,553
Number of Sequences: 1491
Number of extensions: 12384
Number of successful extensions: 54
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 20
length of query: 224
length of database: 494,079
effective HSP length: 74
effective length of query: 150
effective length of database: 383,745
effective search space: 57561750
effective search space used: 57561750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)