BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645950|ref|NP_208129.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(174 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223974.1| putative [Helicobacter pylori J99] 324 9e-91
ref|NP_224086.1| LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS PROTE... 36 5e-04
ref|NP_223831.1| aspartate-semialdehyde dehydrogenase [Heli... 27 0.40
ref|NP_223984.1| URACIL-DNA GLYCOSYLASE [Helicobacter pylor... 25 1.5
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 25 1.5
ref|NP_224122.1| putative [Helicobacter pylori J99] 23 3.4
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 23 4.4
ref|NP_223888.1| SHIKIMATE 5-DEHYDROGENASE [Helicobacter py... 23 4.4
ref|NP_222847.1| putative [Helicobacter pylori J99] 23 4.4
ref|NP_222918.1| putative [Helicobacter pylori J99] 23 5.7
ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pyl... 22 7.5
ref|NP_223510.1| putative ADP-D-glycero-D-mannoheptose synt... 22 7.5
ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERA... 22 7.5
ref|NP_224009.1| putative [Helicobacter pylori J99] 22 9.8
ref|NP_223959.1| putative [Helicobacter pylori J99] 22 9.8
ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helico... 22 9.8
>ref|NP_223974.1| putative [Helicobacter pylori J99]
Length = 174
Score = 324 bits (830), Expect = 9e-91
Identities = 163/174 (93%), Positives = 168/174 (95%)
Query: 1 MNTMNSVLKYKELALYGGSFDPLHKAHLAIIEQTLELLPSAKLIVLPAYQNPFKKPCFLD 60
MNTMNSVL+ KELALYGGSFDPLHKAHLAIIEQTLELLP +LIVLPAYQNPFKKPCFLD
Sbjct: 1 MNTMNSVLECKELALYGGSFDPLHKAHLAIIEQTLELLPFVQLIVLPAYQNPFKKPCFLD 60
Query: 61 AQTRFKELERALKGIDRVLLSDFEIKQERAVPTIESVLHFQKLYHPQTLYLVIGADCLRH 120
A+TRFKELERALKG+ RVLLSDFEIKQERAVPTIESVLHFQKLY P+TLYLVIGADCLRH
Sbjct: 61 AKTRFKELERALKGMPRVLLSDFEIKQERAVPTIESVLHFQKLYRPKTLYLVIGADCLRH 120
Query: 121 LSSWTNAKELLKRVELVVFERIGYEEIQFKGHYHPLKGIDAPISSSAIRASLGV 174
LSSWTNAKELLKRVELVVFERIGYEEIQFKG YHPLKGIDAPISSSAIRASLGV
Sbjct: 121 LSSWTNAKELLKRVELVVFERIGYEEIQFKGRYHPLKGIDAPISSSAIRASLGV 174
>ref|NP_224086.1| LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS PROTEIN [Helicobacter pylori
J99]
Length = 157
Score = 36.2 bits (82), Expect = 5e-04
Identities = 25/74 (33%), Positives = 38/74 (50%), Gaps = 4/74 (5%)
Query: 11 KELALYGGSFDPLHKAHLAIIEQTLELLPSAKLIVLPAYQNPFKKPCFLDAQTRFKELER 70
+++ +Y G+FDP+ H+ II ++ EL KLIV A+ + K P F R K ++
Sbjct: 2 QKIGIYPGTFDPVTNGHIDIIHRSSELF--EKLIVAVAHSSA-KNPMF-SLDERLKMMQL 57
Query: 71 ALKGIDRVLLSDFE 84
A K V FE
Sbjct: 58 ATKSFKNVECVAFE 71
>ref|NP_223831.1| aspartate-semialdehyde dehydrogenase [Helicobacter pylori J99]
Length = 346
Score = 26.6 bits (57), Expect = 0.40
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 139 FERIGY--EEIQFKGHYHPLKGIDAPISSSAIR 169
F+ GY EE++ H + G+D PIS++ +R
Sbjct: 214 FKENGYTKEELKMVHETHKIMGVDFPISATCVR 246
>ref|NP_223984.1| URACIL-DNA GLYCOSYLASE [Helicobacter pylori J99]
Length = 233
Score = 24.6 bits (52), Expect = 1.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 50 QNPFKKPCFLDAQTRFKELERALKGI 75
Q+ FKKP FL+ + R+ E ++ K I
Sbjct: 18 QSEFKKPYFLEIEKRYLEALKSPKTI 43
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 24.6 bits (52), Expect = 1.5
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 19/113 (16%)
Query: 2 NTMNSVLKYKELALYGGSFDPLHKAHLAIIEQTLELLPSAKLIVLPAYQNPFKKPCFLDA 61
N + + K+ L+G + + ++ I QTLE SA L+V P
Sbjct: 117 NALKELQKHPASLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIALTP-------QM 169
Query: 62 QTRFKELERALKGIDRVLLSDFEIKQERAVPTIESVLHFQKLYHPQTLYLVIG 114
Q R K++ + G+ LS + KQ +KLY Q + LV+G
Sbjct: 170 QQRLKKVFKENLGLWHSKLSQNQKKQ-----------FLEKLY-SQEIKLVVG 210
>ref|NP_224122.1| putative [Helicobacter pylori J99]
Length = 108
Score = 23.5 bits (49), Expect = 3.4
Identities = 12/28 (42%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
Query: 43 LIVLPAYQ-NPFKKPCFLDAQTRFKELE 69
LIVL A+ NP +P + + T+F +LE
Sbjct: 11 LIVLKAHPINPLLEPLYFPSYTQFLDLE 38
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 23.1 bits (48), Expect = 4.4
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 33 QTLELLPSAKLIVLPAYQN----PFKKPCFLDAQTRFKELERALKGIDRVLLSDFEIKQE 88
+++++ ++ L + AY++ PF + +DA K+ +AL+ +D++L ++
Sbjct: 689 KSVKIYATSLLKLQDAYKDYSYTPFGEFALIDAYRTTKDYSKALETLDKLLNRRLSLEDH 748
Query: 89 RAVPTIESVL 98
+ ++S L
Sbjct: 749 QKALYLQSSL 758
>ref|NP_223888.1| SHIKIMATE 5-DEHYDROGENASE [Helicobacter pylori J99]
Length = 266
Score = 23.1 bits (48), Expect = 4.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 145 EEIQFKGHYHPL 156
+E+ F GHYHP+
Sbjct: 31 KELGFLGHYHPI 42
>ref|NP_222847.1| putative [Helicobacter pylori J99]
Length = 481
Score = 23.1 bits (48), Expect = 4.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 122 SSWTNAKELLKRVELVVFERI 142
S W N +EL K V+L + R+
Sbjct: 47 SEWENLRELGKEVKLKILSRL 67
>ref|NP_222918.1| putative [Helicobacter pylori J99]
Length = 250
Score = 22.7 bits (47), Expect = 5.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 111 LVIGADCLRHLSSWTNAKELL 131
L +GA CLR L + +AKEL+
Sbjct: 13 LCLGALCLRGLMAEPDAKELV 33
>ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 442
Score = 22.3 bits (46), Expect = 7.5
Identities = 10/36 (27%), Positives = 18/36 (49%)
Query: 28 LAIIEQTLELLPSAKLIVLPAYQNPFKKPCFLDAQT 63
+A + + L ++ + I L + KK C LD+ T
Sbjct: 175 IAQVNEVLRIVDKLEKIGLNGVEEELKKECDLDSNT 210
>ref|NP_223510.1| putative ADP-D-glycero-D-mannoheptose synthase [Helicobacter pylori
J99]
Length = 463
Score = 22.3 bits (46), Expect = 7.5
Identities = 8/27 (29%), Positives = 15/27 (54%)
Query: 11 KELALYGGSFDPLHKAHLAIIEQTLEL 37
+++ G FD LHK H + +++ L
Sbjct: 330 QKIVFTNGCFDILHKGHASYLQKAKAL 356
>ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE [Helicobacter pylori
J99]
Length = 581
Score = 22.3 bits (46), Expect = 7.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 58 FLDAQTRFKELERALKGIDRVLLSDFEIKQE 88
FLDA+ K+ LKG +L+ F + +E
Sbjct: 184 FLDAEEALKKTLSELKGKYDILIGAFHLGRE 214
>ref|NP_224009.1| putative [Helicobacter pylori J99]
Length = 129
Score = 21.9 bits (45), Expect = 9.8
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 20 FDPLHKAHLAIIEQTLELLPSAK--LIVLPAYQNPFK-KPCFLDAQTRFKELERALKGID 76
F+ +HK HL I++ L SA+ +V NPF + + T K L L+G
Sbjct: 12 FETIHKMHLQKIDEIFLRLNSAEDNSVVSFTLVNPFALRKYEFEVPTPLKIL-LELEGAK 70
Query: 77 RVLLSDFEIKQ 87
VL+++ + Q
Sbjct: 71 SVLVANIMVVQ 81
>ref|NP_223959.1| putative [Helicobacter pylori J99]
Length = 376
Score = 21.9 bits (45), Expect = 9.8
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 121 LSSWTNAKELLKRVELVVFERI 142
LSSW L K+++L++ +RI
Sbjct: 87 LSSWLLKWHLEKKMDLLILDRI 108
>ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 21.9 bits (45), Expect = 9.8
Identities = 18/52 (34%), Positives = 23/52 (43%), Gaps = 2/52 (3%)
Query: 23 LHKAHLAIIEQTLELLPSAKLIVLPAYQNPFKKPCFLDAQT-RFKELERALK 73
L K +A+ +TLE L K +L FL +T R LE ALK
Sbjct: 318 LEKLTIALDNKTLEFL-RLKKTLLEKISTQLSTSPFLQTKTERLNRLENALK 368
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.139 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,126
Number of Sequences: 1491
Number of extensions: 7533
Number of successful extensions: 29
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 16
length of query: 174
length of database: 494,079
effective HSP length: 72
effective length of query: 102
effective length of database: 386,727
effective search space: 39446154
effective search space used: 39446154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)