BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645951|ref|NP_208130.1| conserved hypothetical
protein [Helicobacter pylori 26695]
         (148 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223975.1|  putative [Helicobacter pylori J99]              292  2e-81
ref|NP_223062.1|  multi-drug resistance protein [Helicobacte...    24  2.0
ref|NP_223967.1|  CATION EFFLUX SYSTEM PROTEIN [Helicobacter...    23  3.4
ref|NP_223810.1|  glucose-6-phosphate isomerase [Helicobacte...    23  4.4
ref|NP_223528.1|  putative IRON-REGULATED OUTER MEMBRANE PRO...    23  4.4
ref|NP_224148.1|  putative [Helicobacter pylori J99]               22  9.9
ref|NP_223483.1|  putative lipopolysaccharide biosynthesis p...    22  9.9
ref|NP_223006.1|  DIPEPTIDE TRANSPORT SYSTEM DIPEPTIDE TRANS...    22  9.9

>ref|NP_223975.1| putative [Helicobacter pylori J99]
          Length = 148

 Score =  292 bits (748), Expect = 2e-81
 Identities = 145/148 (97%), Positives = 145/148 (97%)

Query: 1   MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPN 60
           MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNW EDNPN
Sbjct: 1   MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWVEDNPN 60

Query: 61  DESKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEI 120
           D SKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNS EI
Sbjct: 61  DGSKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSLEI 120

Query: 121 QRLQLEIGGLRGVKFAKLTKASSFEYNE 148
           QRLQLEIGGLRGVKFAKLTKASSFEYNE
Sbjct: 121 QRLQLEIGGLRGVKFAKLTKASSFEYNE 148



>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
          Length = 551

 Score = 23.9 bits (50), Expect = 2.0
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 13/96 (13%)

Query: 19  QNLLDELDNRIIKNGYSSRSELVRDMIREKLV----EDNWAEDNPNDES-KIAVLVVIYD 73
           +++LDE    +   G   R  + R + ++  V    E   A DN  +ES K ++L     
Sbjct: 463 ESVLDEFGANL-SGGQRQRIAIARALYKDAQVLIFDEATSALDNHTEESVKQSIL----- 516

Query: 74  HHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLE 109
             + + N+ +I I H   T  L T H+ ++    +E
Sbjct: 517 --ELKQNRLIILISHNPSTLKLATKHVKLEHGRLIE 550



>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
          Length = 1035

 Score = 23.1 bits (48), Expect = 3.4
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 6   KDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPNDESKI 65
           ++DS+IR+++SL+Q     + N I  +   +   ++ +   EK++  +    + ND  +I
Sbjct: 189 QNDSLIRYNLSLEQ-----VANAIKNSNNDTGGGVILENGFEKIIRSHGYIQSLNDLEEI 243

Query: 66  AV 67
            V
Sbjct: 244 VV 245



>ref|NP_223810.1| glucose-6-phosphate isomerase [Helicobacter pylori J99]
          Length = 545

 Score = 22.7 bits (47), Expect = 4.4
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 12 RFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPNDESKIAVL 68
          R+ V L+   LD   NR+         EL +D   ++ +E  +  +  N   K AVL
Sbjct: 36 RYFVQLESLSLDYSKNRLNDTTLKLLFELAKDCSLKEKIEAMFKGEKINTTEKRAVL 92



>ref|NP_223528.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
           J99]
          Length = 791

 Score = 22.7 bits (47), Expect = 4.4
 Identities = 14/54 (25%), Positives = 26/54 (47%), Gaps = 2/54 (3%)

Query: 8   DSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPND 61
           DS+  +  + Q   L   D RI K+     +++  D   +K +  +  ++NPND
Sbjct: 404 DSLFEYGFNYQN--LSVFDARIPKSELYRPNQVYTDDKGQKQIACSLVDNNPND 455



>ref|NP_224148.1| putative [Helicobacter pylori J99]
          Length = 282

 Score = 21.6 bits (44), Expect = 9.9
 Identities = 8/26 (30%), Positives = 16/26 (60%)

Query: 27  NRIIKNGYSSRSELVRDMIREKLVED 52
           N+  KN Y   +  ++D ++EK ++D
Sbjct: 158 NKNNKNNYLKNAICLKDYLKEKEIKD 183



>ref|NP_223483.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
           pylori J99]
          Length = 273

 Score = 21.6 bits (44), Expect = 9.9
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 74  HHQRELNQRMIDIQHASGTHVLCTTHIH 101
           HHQ ++   +       G H L   H+H
Sbjct: 34  HHQAQIFDAIYSKTFEGGLHPLVKKHLH 61



>ref|NP_223006.1| DIPEPTIDE TRANSPORT SYSTEM DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
           PROTEIN [Helicobacter pylori J99]
          Length = 287

 Score = 21.6 bits (44), Expect = 9.9
 Identities = 13/39 (33%), Positives = 20/39 (50%), Gaps = 4/39 (10%)

Query: 61  DESKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTH 99
           DE   A+ V I    Q ++ + M ++Q   GT +L  TH
Sbjct: 179 DEPTTALDVTI----QAQILELMKELQQKKGTSILFITH 213



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.318    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,322
Number of Sequences: 1491
Number of extensions: 5558
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 8
length of query: 148
length of database: 494,079
effective HSP length: 70
effective length of query: 78
effective length of database: 389,709
effective search space: 30397302
effective search space used: 30397302
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)