BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645952|ref|NP_208131.1| biopolymer transport
protein (exbB) [Helicobacter pylori 26695]
(166 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223976.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 271 7e-75
ref|NP_224056.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 120 2e-29
ref|NP_223775.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 53 5e-09
ref|NP_223469.1| putative CHEMOTAXIS PROTEIN (MOTILITY PROT... 28 0.17
ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter p... 27 0.37
ref|NP_222890.1| putative [Helicobacter pylori J99] 24 2.4
ref|NP_223919.1| ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE [He... 23 4.1
ref|NP_222981.1| putative [Helicobacter pylori J99] 23 4.1
ref|NP_223928.1| NICOTINAMIDE MONONUCLEOTIDE TRANSPORTER [H... 23 5.4
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 23 5.4
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 22 9.2
ref|NP_224097.1| putative [Helicobacter pylori J99] 22 9.2
ref|NP_223828.1| putative [Helicobacter pylori J99] 22 9.2
ref|NP_223588.1| putative outer membrane protein [Helicobac... 22 9.2
ref|NP_223495.1| putative Outer membrane protein [Helicobac... 22 9.2
ref|NP_223442.1| putative [Helicobacter pylori J99] 22 9.2
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 22 9.2
>ref|NP_223976.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 145
Score = 271 bits (693), Expect = 7e-75
Identities = 140/144 (97%), Positives = 142/144 (98%)
Query: 22 MGGFSVGMLKDYVDIFVFAVLGVASFLALWFAIERVIFYSKVDLKAYDDIDALNLDLTKN 81
MGGFS+ MLKDYVD+FVFAVLGVASFLALWF IERVIFYSKVDLKAYDDIDALNLDLTKN
Sbjct: 1 MGGFSMAMLKDYVDVFVFAVLGVASFLALWFVIERVIFYSKVDLKAYDDIDALNLDLTKN 60
Query: 82 LTILYVIFSNAPYVGLLGTVLGIMVIFYDMGVSGGMDAKTIMVGLSLALKATALGLAVAI 141
LTILYVIFSNAPYVGLLGTVLGIMVIFYDMGVSGGMDAKTIMVGLSLALKATALGLAVAI
Sbjct: 61 LTILYVIFSNAPYVGLLGTVLGIMVIFYDMGVSGGMDAKTIMVGLSLALKATALGLAVAI 120
Query: 142 PTLIAYNSLLRKSDVLSEKFRIMK 165
PTLIAYNSLLRKSDVLSEKFRIMK
Sbjct: 121 PTLIAYNSLLRKSDVLSEKFRIMK 144
>ref|NP_224056.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 150
Score = 120 bits (301), Expect = 2e-29
Identities = 63/134 (47%), Positives = 89/134 (66%)
Query: 30 LKDYVDIFVFAVLGVASFLALWFAIERVIFYSKVDLKAYDDIDALNLDLTKNLTILYVIF 89
+K+ VD + L S + + AIER+ F++ + + Y D L L L K LT++ I
Sbjct: 1 MKEMVDYGIIGFLIFLSVIVIAIAIERLWFFATLRVDDYTDRRKLELALHKRLTLVATIG 60
Query: 90 SNAPYVGLLGTVLGIMVIFYDMGVSGGMDAKTIMVGLSLALKATALGLAVAIPTLIAYNS 149
SNAPY+GLLGTV+GIM+ F D+G + G+D K IM L+LALKAT +GL VAIP ++ YN
Sbjct: 61 SNAPYIGLLGTVMGIMLTFMDLGSASGIDTKAIMTNLALALKATGMGLLVAIPAIVIYNL 120
Query: 150 LLRKSDVLSEKFRI 163
L+RKS++L K+ I
Sbjct: 121 LVRKSEILVTKWDI 134
>ref|NP_223775.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 189
Score = 52.8 bits (125), Expect = 5e-09
Identities = 31/75 (41%), Positives = 41/75 (54%)
Query: 79 TKNLTILYVIFSNAPYVGLLGTVLGIMVIFYDMGVSGGMDAKTIMVGLSLALKATALGLA 138
T L +L +I S AP++GL GTV+ I+ F ++G G I +S AL ATA G+
Sbjct: 96 TTGLVVLSIISSTAPFIGLFGTVVEILEAFNNLGALGQASFGVIAPIISKALIATAAGIL 155
Query: 139 VAIPTLIAYNSLLRK 153
AIP Y L RK
Sbjct: 156 AAIPAYSFYLILKRK 170
>ref|NP_223469.1| putative CHEMOTAXIS PROTEIN (MOTILITY PROTEIN A) [Helicobacter
pylori J99]
Length = 257
Score = 27.7 bits (60), Expect = 0.17
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 92 APYVGLLGTVLGIMVIFYDMGVSGGMDAKTIMVGLSLALKATALGL--AVAIPTLIAYNS 149
AP +GL+G V+G+M+ + M A G++ A AT G+ + AI +
Sbjct: 153 APTMGLVGAVMGLMLALQKLDNPAEMAA-----GIAGAFTATVTGIMCSYAIFGPFGHKL 207
Query: 150 LLRKSDVLSEK 160
+ D++ EK
Sbjct: 208 KAKSKDIIKEK 218
>ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter pylori J99]
Length = 383
Score = 26.6 bits (57), Expect = 0.37
Identities = 33/159 (20%), Positives = 59/159 (36%), Gaps = 24/159 (15%)
Query: 19 GVFMGGFSVGMLKDYVDIFVFAVLGVASF-----LALWF------------------AIE 55
GV+ G V ++KD + VF +L + +F L WF
Sbjct: 160 GVYSHGLGVDLIKDLGILIVFLILIIVAFQIFKTLFWWFPHLKLFVMPKSSQFNQDVRFS 219
Query: 56 RVIFYSKVDLKAYDDIDALNLDLTKNLTILYVIFSNAPYVGLLGTV-LGIMVIFYDMGVS 114
++F+S V + + I+ + L + + + L V G V + + V
Sbjct: 220 LMLFFSLVAIVVWLKIEMVLGAFLAGLVVSTFFPHKSELIHKLNDVGFGFFVPLFFIHVG 279
Query: 115 GGMDAKTIMVGLSLALKATALGLAVAIPTLIAYNSLLRK 153
+D K + + L L+ + +A+ LI L RK
Sbjct: 280 STLDLKLVFLNPHLILQGILIVIAMLSLHLITSTLLWRK 318
>ref|NP_222890.1| putative [Helicobacter pylori J99]
Length = 236
Score = 23.9 bits (50), Expect = 2.4
Identities = 13/42 (30%), Positives = 22/42 (51%)
Query: 72 DALNLDLTKNLTILYVIFSNAPYVGLLGTVLGIMVIFYDMGV 113
D N +T + L V+ S + LG +LG M++F +G+
Sbjct: 58 DLRNETMTNLIGFLLVLASIWVFFLALGVLLGKMLVFSGLGI 99
>ref|NP_223919.1| ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 335
Score = 23.1 bits (48), Expect = 4.1
Identities = 11/27 (40%), Positives = 18/27 (65%)
Query: 114 SGGMDAKTIMVGLSLALKATALGLAVA 140
+GG KTI + AL A+++GL++A
Sbjct: 80 TGGDGLKTINISTIAALIASSMGLSMA 106
>ref|NP_222981.1| putative [Helicobacter pylori J99]
Length = 431
Score = 23.1 bits (48), Expect = 4.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 102 LGIMVIFYDMGVSGGMDAKTIMVGLSLALKATAL 135
LG +I YDM V GMD +V +LAL + ++
Sbjct: 353 LGYSLIDYDMDVKRGMD----LVRKALALDSNSV 382
>ref|NP_223928.1| NICOTINAMIDE MONONUCLEOTIDE TRANSPORTER [Helicobacter pylori J99]
Length = 220
Score = 22.7 bits (47), Expect = 5.4
Identities = 13/46 (28%), Positives = 24/46 (51%), Gaps = 1/46 (2%)
Query: 20 VFMGGFSVGMLKDYVDIFVFAVLGVASFLALWFAIERVIFYSKVDL 65
+F+ F + +L+ YV+ + LG + +WF I ++ S V L
Sbjct: 153 IFIIAFILQVLR-YVENYALVTLGNIVSIIVWFCIFQISTESLVQL 197
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 22.7 bits (47), Expect = 5.4
Identities = 15/49 (30%), Positives = 25/49 (50%), Gaps = 2/49 (4%)
Query: 108 FYDMGVSGGMDAKTIMVGLSLALKATALGLAVAIPTLIAYNSLLRKSDV 156
F++ G D +VG ++ + +T G + I LIA +LL K D+
Sbjct: 245 FFNFQAKQGKDKNDNVVGHTMIIGSTGSGKSTFISFLIA--NLLTKYDM 291
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 21.9 bits (45), Expect = 9.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 60 YSKVDLKAYDDIDALNLDLTKNLTILYVIFS 90
YS L++Y+D++ L +L + FS
Sbjct: 135 YSNTHLESYEDVERFILASNHKCCVLVMTFS 165
>ref|NP_224097.1| putative [Helicobacter pylori J99]
Length = 376
Score = 21.9 bits (45), Expect = 9.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 36 IFVFAVLGVASFLALWFAIE 55
IF+ A L + SFL W E
Sbjct: 265 IFMLAALSLGSFLGAWIKNE 284
>ref|NP_223828.1| putative [Helicobacter pylori J99]
Length = 391
Score = 21.9 bits (45), Expect = 9.2
Identities = 6/16 (37%), Positives = 12/16 (74%)
Query: 94 YVGLLGTVLGIMVIFY 109
Y+G +G LG++ +F+
Sbjct: 365 YIGFVGGALGLLALFW 380
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 21.9 bits (45), Expect = 9.2
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 96 GLLGTVLGIMVIFYDMGVSGGMDAKTIMVGLSLALKATALGLAVAIPTLIAYNSLLRKSD 155
G+ G + G+ +Y + G + GL+ K + + ++IP + RK+
Sbjct: 584 GIFGGLRGLYNSYYVLNKVKGSGNLDVATGLNYRYKHSKYSVGISIPL------IQRKAS 637
Query: 156 VLS 158
V+S
Sbjct: 638 VVS 640
>ref|NP_223495.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 587
Score = 21.9 bits (45), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 89 FSNAPYVGLLGTVLGI 104
F+NA Y GL GTV +
Sbjct: 455 FANATYKGLSGTVASL 470
>ref|NP_223442.1| putative [Helicobacter pylori J99]
Length = 410
Score = 21.9 bits (45), Expect = 9.2
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 95 VGLLGTVLGIMVIFYDMGVSGGM----DAKTIMVGLSLALKATA 134
+ G +G+MV+ M + GM + K ++ L L T+
Sbjct: 30 LAFFGVAVGVMVLIVAMAIMNGMSKEFEKKLFVMNYPLTLYTTS 73
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 21.9 bits (45), Expect = 9.2
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 96 GLLGTVLGIMVIFYDMGVSGGMDAKTIMVGLSLALKATALGLAVAIPTLIAYNSLLRKSD 155
G+ G + G+ +Y + G + GL+ K + + ++IP + RK+
Sbjct: 573 GIFGGLRGLYNSYYVLNKVKGSGNLDVATGLNYRYKHSKYSVGISIPL------IQRKAS 626
Query: 156 VLS 158
V+S
Sbjct: 627 VVS 629
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.330 0.145 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,926
Number of Sequences: 1491
Number of extensions: 7282
Number of successful extensions: 40
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 20
length of query: 166
length of database: 494,079
effective HSP length: 71
effective length of query: 95
effective length of database: 388,218
effective search space: 36880710
effective search space used: 36880710
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)