BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644765|ref|NP_206935.1| hypothetical protein
[Helicobacter pylori 26695]
         (44 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_222844.1|  putative [Helicobacter pylori J99]               90  1e-20
ref|NP_223816.1|  AMINO ACID ABC TRANSPORTER, BINDING PROTEI...    22  2.8

>ref|NP_222844.1| putative [Helicobacter pylori J99]
          Length = 44

 Score = 89.7 bits (221), Expect = 1e-20
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  MRISLLAVILALLFVACHETKKQILQNEADSTPSEKTIWQPEQK 44
          MRISLLAVILALLFVACHETKKQILQNEADSTPSEKTIWQPEQK
Sbjct: 1  MRISLLAVILALLFVACHETKKQILQNEADSTPSEKTIWQPEQK 44



>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR
          [Helicobacter pylori J99]
          Length = 277

 Score = 21.9 bits (45), Expect = 2.8
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)

Query: 5  LLAVILALLFVAC---HETKKQILQ 26
          L  V++AL+F AC   H+ KK  L+
Sbjct: 12 LFLVLIALVFNACSDSHKEKKDALE 36



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.318    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,760
Number of Sequences: 1491
Number of extensions: 714
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 44
length of database: 494,079
effective HSP length: 20
effective length of query: 24
effective length of database: 464,259
effective search space: 11142216
effective search space used: 11142216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)