BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645955|ref|NP_208134.1| outer membrane protein
(omp29) [Helicobacter pylori 26695]
(691 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 1108 0.0
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 1108 0.0
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 704 0.0
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 685 0.0
ref|NP_223551.1| outer membrane protein - adhesin [Helicoba... 664 0.0
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 606 e-175
ref|NP_223820.1| putative Outer membrane function [Helicoba... 555 e-159
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 432 e-122
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 424 e-120
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 293 1e-80
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 144 6e-36
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 144 6e-36
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 144 1e-35
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 143 2e-35
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 139 2e-34
ref|NP_222958.1| putative Outer membrane protein [Helicobac... 132 4e-32
ref|NP_223332.1| putative Outer membrane protein [Helicobac... 120 9e-29
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 108 3e-25
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 108 3e-25
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 107 1e-24
ref|NP_223027.1| putative Outer membrane protein [Helicobac... 104 9e-24
ref|NP_224080.1| putative Outer membrane protein [Helicobac... 100 2e-22
ref|NP_224112.1| putative Outer membrane protein [Helicobac... 99 4e-22
ref|NP_222838.1| putative Outer membrane protein [Helicobac... 92 4e-20
ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobac... 87 1e-18
ref|NP_223363.1| Outer membrane protein/porin [Helicobacter... 86 3e-18
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 70 1e-13
ref|NP_223757.1| putative Outer membrane protein [Helicobac... 64 2e-11
ref|NP_223142.1| putative Outer membrane protein [Helicobac... 61 1e-10
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 53 3e-08
ref|NP_223725.1| putative outer membrane protein [Helicobac... 48 9e-07
ref|NP_223450.1| putative Outer membrane protein [Helicobac... 45 5e-06
ref|NP_223588.1| putative outer membrane protein [Helicobac... 42 4e-05
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 42 4e-05
ref|NP_223078.1| putative Outer membrane protein [Helicobac... 39 3e-04
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 32 0.041
ref|NP_223662.1| putative [Helicobacter pylori J99] 32 0.070
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 31 0.092
ref|NP_223617.1| putative [Helicobacter pylori J99] 30 0.27
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 28 1.0
ref|NP_222814.1| putative [Helicobacter pylori J99] 28 1.0
ref|NP_223381.1| putative Outer membrane protein [Helicobac... 27 1.7
ref|NP_222972.1| DIHYDROOROTASE [Helicobacter pylori J99] 27 1.7
ref|NP_223273.1| putative [Helicobacter pylori J99] 26 2.9
ref|NP_224046.1| putative PROTEASE IV [Helicobacter pylori ... 26 3.8
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 5.0
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 25 5.0
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 25 5.0
ref|NP_222886.1| putative [Helicobacter pylori J99] 25 5.0
ref|NP_224202.1| abc transporter, ATP-binding protein [Heli... 25 8.6
ref|NP_223560.1| putative [Helicobacter pylori J99] 25 8.6
ref|NP_223289.1| putative [Helicobacter pylori J99] 25 8.6
ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE L... 25 8.6
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 1108 bits (2865), Expect = 0.0
Identities = 573/704 (81%), Positives = 610/704 (86%), Gaps = 23/704 (3%)
Query: 1 MKKSLL-LSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLN 59
+KKSL LS SL+ASLSRAEDDGFY SVGYQIGEAVQ+VKNTGALQNLADRYDNL+NLLN
Sbjct: 3 IKKSLFALSFSLMASLSRAEDDGFYMSVGYQIGEAVQKVKNTGALQNLADRYDNLSNLLN 62
Query: 60 QYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIA 119
QYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIA
Sbjct: 63 QYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIA 122
Query: 120 LFIGCGPGPT------NNQSYQSFGNTPALN------GTTTTCNQAYGTGPNGILSIDEY 167
I CGPGP N +SF NTP + TTTTCN A GPNGILS EY
Sbjct: 123 FGISCGPGPNLGPEHLENGGVRSFDNTPNYSYNTGSGTTTTTCNGASNVGPNGILSSSEY 182
Query: 168 QKLNQAYQIIQTALNQNQGGGMPALNDTTKTGVVNIQQTNYRTTTQNNIIEHYYTENGKE 227
Q LN AYQ IQTALNQNQGGGMPALN ++K VVNI QT T+N E+ Y +
Sbjct: 183 QVLNTAYQTIQTALNQNQGGGMPALN-SSKNMVVNINQT----FTKNPTTEYTYPDGNGN 237
Query: 228 IPVSYSGGSSFSPTIQLTYHNNAENLLQQAATIMQVLITQKPHVQTSNGGKAWGLSSTPG 287
YSGGSS ++++ N+AENLLQQAATI+ VL TQ PHV + GG AWG G
Sbjct: 238 Y---YSGGSSIPIQLKISSVNDAENLLQQAATIINVLTTQNPHV--NGGGGAWGFGGKTG 292
Query: 288 NVMDIFGPSFNAINEMIKNAQTALAKTQQLNANENAQITQPNNFNPYTSKDKGFAQEMLN 347
NVMDIFG SFNAINEMIKNAQ L KTQQLNANEN QITQP+NFNPYTSKD FAQEMLN
Sbjct: 293 NVMDIFGDSFNAINEMIKNAQAVLEKTQQLNANENTQITQPDNFNPYTSKDTQFAQEMLN 352
Query: 348 RAEAQAEILNLAKQVANNFHSIQGPIQGDLEECKAGSAGVITNNTWGSGCAFVKETLNSL 407
RA AQAEIL+LA+QVA+NFHSIQGPIQ DLEEC AGSAGVI +NT+GSGCAFVKETLNSL
Sbjct: 353 RANAQAEILSLAQQVADNFHSIQGPIQQDLEECTAGSAGVINDNTYGSGCAFVKETLNSL 412
Query: 408 EQHTAYYGNQVNQDRALAQTILNFKEALNTLNKDSKAINSGISNLPNAKSLQNMTHATQN 467
EQHTAYYGNQVNQDRAL+QTILNFKEAL+TL DSKAINSGISNLPNAKSLQNMTHATQN
Sbjct: 413 EQHTAYYGNQVNQDRALSQTILNFKEALSTLGNDSKAINSGISNLPNAKSLQNMTHATQN 472
Query: 468 PNSPEGLLTYSLDSSKYNQLQTIAQELGKNPFRRFGVIDFQNNNGAMNGIGVQVGYKQFF 527
PNSPEGLLTYSLD+SKYNQLQT+AQELGKNPFRR GVI++QNNNGAMNGIGVQ GYKQFF
Sbjct: 473 PNSPEGLLTYSLDTSKYNQLQTVAQELGKNPFRRIGVINYQNNNGAMNGIGVQAGYKQFF 532
Query: 528 GKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKL 587
GKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKL
Sbjct: 533 GKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKL 592
Query: 588 SVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKKDSD 647
SVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVS SNFQFLFDLGLRMNLARPKKKDSD
Sbjct: 593 SVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSASNFQFLFDLGLRMNLARPKKKDSD 652
Query: 648 HAAQHGIELGFKIPTINTNYYSFMGAKLEYRRMYSLFLNYVFAY 691
HAAQHG+ELG KIPTINT+YYSFMGA+L+YRR+YS++LNYVFAY
Sbjct: 653 HAAQHGMELGVKIPTINTDYYSFMGAELKYRRLYSVYLNYVFAY 696
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 1108 bits (2865), Expect = 0.0
Identities = 573/704 (81%), Positives = 610/704 (86%), Gaps = 23/704 (3%)
Query: 1 MKKSLL-LSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLN 59
+KKSL LS SL+ASLSRAEDDGFY SVGYQIGEAVQ+VKNTGALQNLADRYDNL+NLLN
Sbjct: 3 IKKSLFALSFSLMASLSRAEDDGFYMSVGYQIGEAVQKVKNTGALQNLADRYDNLSNLLN 62
Query: 60 QYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIA 119
QYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIA
Sbjct: 63 QYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIA 122
Query: 120 LFIGCGPGPT------NNQSYQSFGNTPALN------GTTTTCNQAYGTGPNGILSIDEY 167
I CGPGP N +SF NTP + TTTTCN A GPNGILS EY
Sbjct: 123 FGISCGPGPNLGPEHLENGGVRSFDNTPNYSYNTGSGTTTTTCNGASNVGPNGILSSSEY 182
Query: 168 QKLNQAYQIIQTALNQNQGGGMPALNDTTKTGVVNIQQTNYRTTTQNNIIEHYYTENGKE 227
Q LN AYQ IQTALNQNQGGGMPALN ++K VVNI QT T+N E+ Y +
Sbjct: 183 QVLNTAYQTIQTALNQNQGGGMPALN-SSKNMVVNINQT----FTKNPTTEYTYPDGNGN 237
Query: 228 IPVSYSGGSSFSPTIQLTYHNNAENLLQQAATIMQVLITQKPHVQTSNGGKAWGLSSTPG 287
YSGGSS ++++ N+AENLLQQAATI+ VL TQ PHV + GG AWG G
Sbjct: 238 Y---YSGGSSIPIQLKISSVNDAENLLQQAATIINVLTTQNPHV--NGGGGAWGFGGKTG 292
Query: 288 NVMDIFGPSFNAINEMIKNAQTALAKTQQLNANENAQITQPNNFNPYTSKDKGFAQEMLN 347
NVMDIFG SFNAINEMIKNAQ L KTQQLNANEN QITQP+NFNPYTSKD FAQEMLN
Sbjct: 293 NVMDIFGDSFNAINEMIKNAQAVLEKTQQLNANENTQITQPDNFNPYTSKDTQFAQEMLN 352
Query: 348 RAEAQAEILNLAKQVANNFHSIQGPIQGDLEECKAGSAGVITNNTWGSGCAFVKETLNSL 407
RA AQAEIL+LA+QVA+NFHSIQGPIQ DLEEC AGSAGVI +NT+GSGCAFVKETLNSL
Sbjct: 353 RANAQAEILSLAQQVADNFHSIQGPIQQDLEECTAGSAGVINDNTYGSGCAFVKETLNSL 412
Query: 408 EQHTAYYGNQVNQDRALAQTILNFKEALNTLNKDSKAINSGISNLPNAKSLQNMTHATQN 467
EQHTAYYGNQVNQDRAL+QTILNFKEAL+TL DSKAINSGISNLPNAKSLQNMTHATQN
Sbjct: 413 EQHTAYYGNQVNQDRALSQTILNFKEALSTLGNDSKAINSGISNLPNAKSLQNMTHATQN 472
Query: 468 PNSPEGLLTYSLDSSKYNQLQTIAQELGKNPFRRFGVIDFQNNNGAMNGIGVQVGYKQFF 527
PNSPEGLLTYSLD+SKYNQLQT+AQELGKNPFRR GVI++QNNNGAMNGIGVQ GYKQFF
Sbjct: 473 PNSPEGLLTYSLDTSKYNQLQTVAQELGKNPFRRIGVINYQNNNGAMNGIGVQAGYKQFF 532
Query: 528 GKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKL 587
GKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKL
Sbjct: 533 GKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKL 592
Query: 588 SVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKKDSD 647
SVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVS SNFQFLFDLGLRMNLARPKKKDSD
Sbjct: 593 SVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSASNFQFLFDLGLRMNLARPKKKDSD 652
Query: 648 HAAQHGIELGFKIPTINTNYYSFMGAKLEYRRMYSLFLNYVFAY 691
HAAQHG+ELG KIPTINT+YYSFMGA+L+YRR+YS++LNYVFAY
Sbjct: 653 HAAQHGMELGVKIPTINTDYYSFMGAELKYRRLYSVYLNYVFAY 696
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 704 bits (1817), Expect = 0.0
Identities = 382/709 (53%), Positives = 474/709 (65%), Gaps = 24/709 (3%)
Query: 1 MKKSLLLSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLNQ 60
MKK+LLLSLSL L AEDDGFY S G +IGEA Q VKNT +Q L++ Y+ LNNLLN
Sbjct: 1 MKKTLLLSLSLSFGL-HAEDDGFYASAGIRIGEAAQMVKNTKGIQQLSENYEKLNNLLNN 59
Query: 61 YNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIAL 120
YN LN+LV L+S PSA+ A DNL SS NL SPAYQAV LALNAAVG+WQV +
Sbjct: 60 YNTLNTLVKLSSDPSAVNDARDNLGSSTRNLLDVKANSPAYQAVLLALNAAVGLWQVTSY 119
Query: 121 -FIGCGPGPTNNQS--YQSFGNTPALNGTTTTCNQAYGTGPNGILSIDEYQKLNQAYQII 177
F CGPG N + Q+F N P N TT TCN Y G G +S Y +N+AYQII
Sbjct: 120 AFTACGPGSNENANGGIQTFNNVPGQNTTTITCNSYYEPGHGGPISTKNYAIINKAYQII 179
Query: 178 QTALNQNQGGGMPALNDTTKTGVVNIQQTNYRTTTQNNIIEHYYTENGKEIPVSYSGGSS 237
Q AL N G G+P L++TT I RT + N Y +GK I S++ +
Sbjct: 180 QKALTAN-GEGIPVLSNTTTKLDFTINGDK-RTGGEPNKKLVYPWSHGKAISTSWNATIT 237
Query: 238 FSPTIQLTYHNNAENLLQQAATIMQVLITQKPHVQTSNGGKAWGLSSTPGNVMDIFGPSF 297
T + N+A+ LL+QA+ I+ L + P+ Q G G+S G + +F
Sbjct: 238 APTTENINTTNSAQELLKQASIIITTLNSACPNFQNGGSGYWAGISGN-GTMCGMFKNEI 296
Query: 298 NAINEMIKNAQTALAKTQQLNANENAQ--ITQPNNFNPYTSKDKGFAQEMLNRAEAQAEI 355
+AI MI NAQ A+A+ + ++ N Q + FNPYT D FA+ ML A+AQAEI
Sbjct: 297 SAIQGMIANAQEAVAQAKIVSENTQNQNSLDAGKPFNPYT--DASFAESMLKNAQAQAEI 354
Query: 356 LNLAKQVANNFHSIQGPIQGDL---------EECKAGSAGVITNNTWGSGCAFVKETLNS 406
LN A+QV NF I D E + + G T+NTWG+GCA+V +T+ +
Sbjct: 355 LNQAEQVVKNFEKIPTAFVNDSLGVCYEVQGGERRGTNPGQTTSNTWGAGCAYVGQTITN 414
Query: 407 LEQHTAYYGNQ---VNQDRALAQTILNFKEALNTLNKDSKAINSGISNLPNAKSLQNMTH 463
L+ A++G Q + Q +A T++NFK + L +I + +SN+PNA+SLQN
Sbjct: 415 LKNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSNIPNAQSLQNAVS 474
Query: 464 ATQNPNSPEGLLT-YSLDSSKYNQLQTIAQELGKNPFRRFGVIDFQNNNGAMNGIGVQVG 522
NP SP+G+ T Y L+ + YNQ+QTI QELG+NPFR+ G++ Q NNGAMNGIG+QVG
Sbjct: 475 KKNNPYSPQGIDTNYYLNQNSYNQIQTINQELGRNPFRKVGIVSSQTNNGAMNGIGIQVG 534
Query: 523 YKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLG 582
YKQFFG+KR WG RYYGFFDYNHA+IKS+FFNSASDVWTYG G DALYNFINDK TNFLG
Sbjct: 535 YKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLG 594
Query: 583 KNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPK 642
KNNKLSVGLFGG ALAGTSWLNS+ VNL MN +YNA ++ +NFQFLF++G+RMNLARPK
Sbjct: 595 KNNKLSVGLFGGIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARPK 654
Query: 643 KKDSDHAAQHGIELGFKIPTINTNYYSFMGAKLEYRRMYSLFLNYVFAY 691
KKDSDHAAQHGIELG KIPTINTNYYSFMGA+L+YRR+YS++LNYVFAY
Sbjct: 655 KKDSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 703
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 685 bits (1767), Expect = 0.0
Identities = 374/704 (53%), Positives = 465/704 (65%), Gaps = 49/704 (6%)
Query: 1 MKKSLLLSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLNQ 60
MKK+LLLSLS +SL AED+GF+ S GYQIGEA Q VKNTG L+ L+D Y+NL+NLL
Sbjct: 1 MKKTLLLSLSA-SSLLNAEDNGFFISAGYQIGEAAQMVKNTGELKKLSDTYENLSNLLTN 59
Query: 61 YNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIAL 120
+N LN V AS+PS I AIDNL ++ L T SPAYQAV LALNAAVG+W VIA
Sbjct: 60 FNNLNQAVTNASSPSEINAAIDNLKANTQGLIGEKTNSPAYQAVYLALNAAVGLWNVIAY 119
Query: 121 FIGCGPGPTNNQSYQSFGNTPALNGTTTTCN-QAYGTGPNGILSIDEYQKLNQAYQIIQT 179
+ CGPG + QS +F P N ++ CN Y G +G LSI+ ++KLNQAYQ IQ
Sbjct: 120 NVQCGPGNSGQQSV-TFEGQPGHNSSSINCNLTGYNNGVSGPLSIENFKKLNQAYQTIQQ 178
Query: 180 ALNQNQGGGMPALNDTTKTGVVNIQQTNYRTTTQNNIIEHYYTENGKEIPVSYSGGSSFS 239
AL Q+ G P L+ K + I TTQ N G +
Sbjct: 179 ALKQDSG--FPVLDSAGKQVTITI-------TTQTN------------------GANKSE 211
Query: 240 PTIQLTYHNNAENLLQQAATIMQVLITQKP---HVQTSNGGKAWGLSSTPGNVMDIFGPS 296
T T N+A+ LLQ+A+ ++ VL T P H Q NGG WGL T GNV +F
Sbjct: 212 TTTTTTTTNDAQTLLQEASKMISVLTTNCPWVNHNQGQNGGAPWGLD-TAGNVCQVFATE 270
Query: 297 FNAINEMIKNAQTALAKTQQLNANENAQITQPNNFNPYTSKDKGFAQEMLNRAEAQAEIL 356
F+A+ MIKNAQ + + Q LN N P +FNPYTS D+ FAQ MLN A+AQA+IL
Sbjct: 271 FSAVTSMIKNAQEIVTQAQSLNQQNNQNA--PQDFNPYTSADRAFAQNMLNHAQAQAKIL 328
Query: 357 NLAKQVANNFHSIQGP-IQGDLEECKAGSAGV----ITNNTWGSGCAFVKETLNSLEQHT 411
LA Q+ + ++I I L C G + +TNNTWG+GCA+V+ET+ +L
Sbjct: 329 ELADQMKKDLNTIPSQFITNYLAACHNGGGTLPDAGVTNNTWGAGCAYVEETITALNNSL 388
Query: 412 AYYGNQ---VNQDRALAQTILNFKEALNTLNKDSKAINSGISNLPNAKSLQNMTHATQNP 468
A++G Q + Q LA+TIL+F+ +L+ LN +I + SN PN+ L+N+ + NP
Sbjct: 389 AHFGTQAEQIKQSELLARTILDFRGSLSNLNNTYNSITTTASNTPNSPFLKNLISQSTNP 448
Query: 469 NSPEGL-LTYSLDSSKYNQLQTIAQELGKNPFRRFGVIDFQNNNGAMNGIGVQVGYKQFF 527
N+P GL Y ++ S Y+QL + QELG NPFRR G+I Q NNGAMNGIGVQVGYKQFF
Sbjct: 449 NNPGGLQAVYQVNQSAYSQLLSATQELGHNPFRRVGLISSQTNNGAMNGIGVQVGYKQFF 508
Query: 528 GKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKL 587
G+KR WGLRYYGFFDYNHAYIKS+FFNSASDV+TYGVG D LYNFINDK T KN+K+
Sbjct: 509 GEKRRWGLRYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKTT----KNSKI 564
Query: 588 SVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKKDSD 647
S G+FGG ALAGTSWLNSQ VNL N Y+A ++ +NFQFLF+LGLRMNLA+ KKK SD
Sbjct: 565 SFGVFGGIALAGTSWLNSQYVNLATFNNFYSAKMNVANFQFLFNLGLRMNLAKNKKKASD 624
Query: 648 HAAQHGIELGFKIPTINTNYYSFMGAKLEYRRMYSLFLNYVFAY 691
HAAQHG+ELG KIPTINTNYYS +G +L+YRR+YS++LNYVFAY
Sbjct: 625 HAAQHGVELGVKIPTINTNYYSLLGTQLQYRRLYSVYLNYVFAY 668
>ref|NP_223551.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 744
Score = 664 bits (1713), Expect = 0.0
Identities = 372/752 (49%), Positives = 483/752 (63%), Gaps = 69/752 (9%)
Query: 1 MKKSLL-LSL-SLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLL 58
MKK +L L+L SL+ S AEDDGFYTSVGYQIGEA Q V NT +Q+L+DRY++LNNLL
Sbjct: 1 MKKHILSLTLGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQDLSDRYESLNNLL 60
Query: 59 NQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVI 118
N+Y+ LN+L+ L++ PSAI +NL +SA NL SPAYQAV LA+NAAVG W V+
Sbjct: 61 NRYSTLNTLIKLSADPSAINAVRENLGASAKNLIGDKANSPAYQAVLLAINAAVGFWNVV 120
Query: 119 ALFIGCGPGPTNNQSYQS---FGNTPALNGTTTTCN-QAYGTGPNGILSIDEYQKLNQAY 174
CG +S S F N P T+ TC+ + G G +SI+ ++KLN+AY
Sbjct: 121 GYVTQCGGNANGQKSISSKTIFNNEPGYRSTSITCSLNGHSPGYYGPMSIENFKKLNEAY 180
Query: 175 QIIQTALNQNQGGGMPALNDTTKTGVVNIQQTNYRTTTQNNIIEHYYT-----ENGKEIP 229
QI+QTAL + G+PAL + G VN+ T + NN T ++G +
Sbjct: 181 QILQTALKR----GLPALKENN--GKVNVTYTYTCSGDGNNNCSSQVTGVNNQKDGTKTK 234
Query: 230 VSYSGGSSFSPTIQ--------------LTYH----------NNAENLLQQAATIMQVLI 265
+ G S + TI ++Y ++A+ LL QA+T++ +
Sbjct: 235 IQTIDGKSVTTTISSKVVDSRADGNTTGVSYTEITNKLEGVPDSAQALLAQASTLINTIN 294
Query: 266 TQKPHVQTSNGGKAWG--LSSTPGNVMDIFGPSFNAINEMIKNAQTALAKTQQLNANENA 323
P+ SN +A S+T G + F +AI +MI +AQ + +T +N +E
Sbjct: 295 NACPYFHASNSSEANAPKFSTTTGKICGAFSEEISAIQKMITDAQELVNQTSVINEHEQT 354
Query: 324 QITQPNN---FNPYTSKDKGFAQEMLNRAEAQAEILNLAKQVANNFH------SIQGPIQ 374
NN FNP+T D FAQ ML A AQA++LNLA+QV + + Q ++
Sbjct: 355 TPVGNNNGKPFNPFT--DASFAQGMLANASAQAKMLNLAEQVGQAINPERLSGTFQNFVK 412
Query: 375 GDLEECK----------AGSA-GVITNNTWGSGCAFVKETLNSLEQHTAYYGNQ---VNQ 420
G L C GSA G +T T+ SGCA+V +T+ +L+ A++G Q + Q
Sbjct: 413 GFLATCNNPSTAGTGGTQGSAPGTVTTQTFASGCAYVGQTITNLKNSIAHFGTQEQQIQQ 472
Query: 421 DRALAQTILNFKEALNTLNKDSKAINSGISNLPNAKSLQNMTHATQNPNSPEGLLT-YSL 479
+A T++NFK + L +I + +SN+PNA+SLQN NP SP+G+ T Y L
Sbjct: 473 AENIADTLVNFKSRYSELGNTYNSITTALSNIPNAQSLQNAVSKKNNPYSPQGIDTNYYL 532
Query: 480 DSSKYNQLQTIAQELGKNPFRRFGVIDFQNNNGAMNGIGVQVGYKQFFGKKRNWGLRYYG 539
+ + YNQ+QTI QELG+NPFR+ G++ Q NNGAMNGIG+QVGYKQFFG+KR WG RYYG
Sbjct: 533 NQNSYNQIQTINQELGRNPFRKVGIVSSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYG 592
Query: 540 FFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKLSVGLFGGFALAG 599
FFDYNHA+IKS+FFNSASDVWTYG G DALYNFINDK TNFLGKNNKLSVGLFGG ALAG
Sbjct: 593 FFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAG 652
Query: 600 TSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKKDSDHAAQHGIELGFK 659
TSWLNS+ VNL MN +YNA ++ +NFQFLF++G+RMNLARPKKKDSDHAAQHGIELG K
Sbjct: 653 TSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARPKKKDSDHAAQHGIELGLK 712
Query: 660 IPTINTNYYSFMGAKLEYRRMYSLFLNYVFAY 691
IPTINTNYYSFMGA+L+YRR+YS++LNYVFAY
Sbjct: 713 IPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 744
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 606 bits (1563), Expect = e-175
Identities = 353/723 (48%), Positives = 455/723 (62%), Gaps = 68/723 (9%)
Query: 2 KKSLLLSL-SLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLNQ 60
KK L L+L SL+ S AED+GF+ S GYQIGE+ Q VKNT +Q+L+D Y+ LNNLL
Sbjct: 3 KKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLLTN 62
Query: 61 YNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIAL 120
Y+ LN+L+ ++ P+AI A NL++SA NL + SPAYQAV LALNAA G+WQV++
Sbjct: 63 YSVLNALIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVMSY 122
Query: 121 FIG-CGPGP--TNNQSYQSFGNTPA--LNGTTTTCNQA-YGTGPNGILSIDEYQKLNQAY 174
I CGPG + N Q+F NTP+ GTT TC Y GP ILS + Y K+N+AY
Sbjct: 123 AISPCGPGKDTSKNGGVQTFHNTPSNQWGGTTITCGTTGYEPGPYSILSTENYAKINKAY 182
Query: 175 QIIQTALNQNQGGGMPALNDTTKTGVVNIQQTNYRTTTQNNIIEHYYTENGKEIPVSYSG 234
QIIQ A + G +PAL+DT I + N T T NN G+EI
Sbjct: 183 QIIQKAFGSS-GKDIPALSDTNTELKFTINKNNGNTNTNNN---------GEEIVTK--- 229
Query: 235 GSSFSPTIQLTYHNNAENLLQQAATIMQVLITQKPHVQTSNGGKAWGLSSTP-------- 286
NNA+ LL+QA+TI+ L + P + N G A G SS
Sbjct: 230 -------------NNAQVLLEQASTIITTLNSACPWI---NNGGAGGASSGSLWEGIYLK 273
Query: 287 --GNVMDIFGPSFNAINEMIKNAQTALAKTQQLNANENAQ--ITQPNNFNPYTSKDKGFA 342
G+ IF +AI +MIKNA A+ +++ + AN Q + FNPY KD FA
Sbjct: 274 GDGSACGIFKNEISAIQDMIKNAAIAVEQSKIVAANAQNQRNLDTGKTFNPY--KDANFA 331
Query: 343 QEMLNRAEAQAEILNLAKQVANNFHSIQGP-IQGDLEEC--------KAGSAGVITNNTW 393
Q M A+AQAEILN A+ V +F I ++ L C + +G +T+NTW
Sbjct: 332 QSMFANAKAQAEILNRAQAVVKDFERIPAEFVKDSLGVCHEVQNGHLRGTPSGTVTDNTW 391
Query: 394 GSGCAFVKETLNSLEQHTAYYGNQ---VNQDRALAQTILNFKEALNTLNKDSKAINSGIS 450
G+GCA+V ET+ +L+ A++G+Q ++ R LA T+ NF L + +I + IS
Sbjct: 392 GAGCAYVGETVTNLKDSIAHFGDQAERIHNARNLAYTLANFSSQYQKLGEHYDSITAAIS 451
Query: 451 NLPNAKSLQNMTHATQNPNSPEGLL-TYSLDSSKYNQLQTIAQELGKNPFRRFGVIDFQN 509
+LP+A+SLQN+ NPNSP+G+ Y +DS+ ++Q+Q+ +QELG NPFRR G+I
Sbjct: 452 SLPDAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAAST 511
Query: 510 -NNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDA 568
NNGAMNGIG QVGYKQFFGK + WG RYYGF DYNH Y KS FFN++SDVWTYGVG D
Sbjct: 512 TNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNASSDVWTYGVGSDL 571
Query: 569 LYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTSNFQF 628
L NFINDK T K+NK+S G FGG ALAGTSWLNSQ VNL +N Y A ++T+NFQF
Sbjct: 572 LVNFINDKAT----KHNKISFGAFGGIALAGTSWLNSQYVNLANVNNYYKAKINTANFQF 627
Query: 629 LFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTINTNYYSFMGAKLEYRRMYSLFLNYV 688
LF+LGLRMNLAR K + +D+AAQHGIELG KIPTINTNYYS +G L+YRR+YS++LNYV
Sbjct: 628 LFNLGLRMNLARKKHRATDNAAQHGIELGTKIPTINTNYYSLLGTTLQYRRLYSVYLNYV 687
Query: 689 FAY 691
FAY
Sbjct: 688 FAY 690
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 555 bits (1431), Expect = e-159
Identities = 334/726 (46%), Positives = 429/726 (59%), Gaps = 123/726 (16%)
Query: 2 KKSLLLSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLNQY 61
KK++LLSL+L ASL AED+G + SVGYQIGEAVQ+VKN +Q L+D Y+ L+ LL
Sbjct: 5 KKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDVYEQLSKLLAND 64
Query: 62 NYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIALF 121
N +S ++ AI A++NL+ SA L TT SPAYQA LAL +A+G+W +
Sbjct: 65 NGTSS----KTSAQAINQAVNNLNESAKTLAGGTTNSPAYQATLLALRSALGLWNSMGYA 120
Query: 122 IGCG-----PGPTNNQSYQSFGNTPALNGTTTTCN---QAYGT-GPNGI----------L 162
+ CG PG N +++ NGTT C + GT PNG L
Sbjct: 121 VVCGGYIKKPGENNQKNFHYTDENG--NGTTINCGGSTNSNGTHSPNGTNTLKADKNVSL 178
Query: 163 SIDEYQKLNQAYQIIQTALNQNQGGGMPALNDTTKTGVVNIQQTNYRTTTQNNIIEHYYT 222
SI++Y+K+++AYQI+ AL Q G+ LN ++ +E + T
Sbjct: 179 SIEQYEKIHEAYQILSKALKQ---AGLAPLN------------------SKGEKLEAHVT 217
Query: 223 ENGKEIPVSYSGGSSFSPTIQLTYHNNAENLLQQAATIMQVLITQKPHV---QTSNGGK- 278
+ + S ++ + I T N+A+NLL QA TI+ L P + +SNGG
Sbjct: 218 TSKDQQGTSSDQTTTTTSVIDTT--NDAQNLLTQAQTIVNTLKDYCPMLIAKSSSNGGTN 275
Query: 279 -----AWGLSSTPGNVMDIFGPSFNAINEMIKNAQTALAKTQQLNANENAQITQPNNFNP 333
+W + N FG F+AI++MI NAQ + +TQQLNAN+ ITQPNNFN
Sbjct: 276 GANTPSWQTAGGGKNSCATFGAEFSAISDMISNAQKIVQETQQLNANQPKNITQPNNFNL 335
Query: 334 YTSKD-KGFAQEMLNRAEAQAEILNLAKQVANNFHSIQ-GPIQGDLEECKAG--SAGVIT 389
+ AQ ML A++Q EIL LA QVA++F + G ++ + +C S+ +T
Sbjct: 336 NSPGSLTALAQSMLKNAQSQTEILKLANQVASDFDKLSSGYLKDYIGKCDVSGVSSSNMT 395
Query: 390 ----NNTWGSGCAFVKETLNSLEQHTAYYGNQVNQDRALAQTILNFKEALNTLNKDSKAI 445
N TWG GCA V+ETL SL+ T + NQ
Sbjct: 396 PQNMNTTWGKGCAGVEETLTSLKASTTDFNNQTTPQ------------------------ 431
Query: 446 NSGISNLPNAKSLQNMTHATQNPNSPEGLLTYSLDSSKYNQLQTIAQELGKNPFRRFGVI 505
L A++L N T+ QELG NPF+R G+I
Sbjct: 432 ------LDQAQTLAN----------------------------TLTQELGNNPFKRVGII 457
Query: 506 DFQNNNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVG 565
Q NNGAMNG+GVQ GYKQFFG+KR WGLRYYGFFDYNH YIKS+FFNS+SDV TYGVG
Sbjct: 458 GSQTNNGAMNGLGVQAGYKQFFGQKRRWGLRYYGFFDYNHTYIKSSFFNSSSDVLTYGVG 517
Query: 566 MDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTSN 625
D L+NFINDKNTNFLGKNNK+SVGLFGG ALAGTSWLNSQ VNL ++ +Y+A V+T+N
Sbjct: 518 SDLLFNFINDKNTNFLGKNNKISVGLFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTAN 577
Query: 626 FQFLFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTINTNYYSFMGAKLEYRRMYSLFL 685
FQFLF+LGLR NLARPKKKDSDH+AQHG+ELG KIPTINTNYYS++G KLEYRR+YS++L
Sbjct: 578 FQFLFNLGLRTNLARPKKKDSDHSAQHGMELGVKIPTINTNYYSYLGTKLEYRRLYSVYL 637
Query: 686 NYVFAY 691
NYVFAY
Sbjct: 638 NYVFAY 643
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 432 bits (1112), Expect = e-122
Identities = 282/709 (39%), Positives = 397/709 (55%), Gaps = 76/709 (10%)
Query: 1 MKKSLLLSLSL--IASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLL 58
MKK++LLSLSL +SL AED+GF+ S GYQIGEAVQ VKNTG L+NL ++Y+ L+ L
Sbjct: 1 MKKTILLSLSLSLASSLLHAEDNGFFVSAGYQIGEAVQMVKNTGELKNLNEKYEQLSQYL 60
Query: 59 NQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVI 118
NQ L + A+ + +++ L S N ++TT SP + AV + + +G W +
Sbjct: 61 NQVASLKQSIQNANNIELVNSSLNYLKSFTNNNYNSTTQSPIFNAVQAVITSVLGFWSLY 120
Query: 119 A-LFIGCGPGPTNNQSYQSFGNTPALNGTTTTCNQAYGTGPNGILSIDEYQKLNQAYQII 177
A ++ + Q S P + C+ N ++ Y K+ + + +
Sbjct: 121 AGNYLTFFVVNKDTQKPASVQGNPPFSTIVQNCSGI----ENCAMNQTTYDKMKKLAEDL 176
Query: 178 QTALNQNQGGGMPALNDTTKTGVVNIQQTNYRTTTQNNIIEHYYTENGKEIPVSYSGGSS 237
Q A N TTK N+ + TTQ G +
Sbjct: 177 QAAQQ----------NATTKAN--NLCALSGCATTQ---------------------GQN 203
Query: 238 FSPTIQLTYHNNAENLLQQAATIMQVLITQKPHVQTSNGGKAWGLSSTPGNVMDIFGPS- 296
S T+ +NA NL QQ +M ++ K + N A G+S+ G + P+
Sbjct: 204 PSSTV-----SNALNLAQQ---LMDLIANTKTAMMWKNIVIA-GVSNVSGAIDSTGYPTQ 254
Query: 297 ---FNAINEMIKNAQTALAKTQQ---LNANENAQITQPNNFNPYTSKDKGFAQEMLNRAE 350
FN I MI Q A+ +Q L+A+ AQ T NP FA+++ A+
Sbjct: 255 YAVFNNIKAMIPILQQAVTLSQSNHTLSASLQAQATGSQT-NPK------FAKDIYAFAQ 307
Query: 351 AQAEILNLAKQVANNFHSIQGPIQGDLEEC--KAGSAGVITNNTWGSGCAFVKETLNSLE 408
Q ++++ A+ + N F SI LE+ K +AG N + +E + +++
Sbjct: 308 NQKQVISYAQDIFNLFSSIPKDQYRYLEKAYLKIPNAGKTPTNPYRQEVNLNQE-IQTIQ 366
Query: 409 QHTAYYGNQVNQDRALAQTILNFK----EALNTLNKDSKAINSGISNLP-NAKSLQNMTH 463
+ +YYGN+V+ ++A+ + N K E + T N ++K ++ IS LP N + +++
Sbjct: 367 NNVSYYGNRVDAALSVAKDVYNLKSNQTEIVTTYN-NAKNLSQEISKLPYNQVNTKDIIT 425
Query: 464 ATQNPNSPE-GLLTYSLDSSKYNQLQTIAQELGKNPFRRFGVIDFQNNNGAMNGIGVQVG 522
+ N+P G Y ++ + + L + NPF++ G+I QNNNGA+NG+GVQVG
Sbjct: 426 LPYDQNAPAAGQYNYQINPEQQSNLSQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVG 485
Query: 523 YKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLG 582
YKQFFG+ + WGLRYYGFFDYNH YIKS+FFNS+SD+WTYG G D L NFIND T
Sbjct: 486 YKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNFINDSITR--- 542
Query: 583 KNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPK 642
KNNKLSVGLFGG LAGT+WLNSQ +NLT N Y+A V+ SNFQFLF+LGLR NLA K
Sbjct: 543 KNNKLSVGLFGGIQLAGTTWLNSQYMNLTAFNNPYSAKVNASNFQFLFNLGLRTNLATAK 602
Query: 643 KKDSDHAAQHGIELGFKIPTINTNYYSFMGAKLEYRRMYSLFLNYVFAY 691
KKDS+ +AQHG+ELG KIPTINTNYYSF+G KLEYRR+YS++LNYVFAY
Sbjct: 603 KKDSERSAQHGVELGIKIPTINTNYYSFLGTKLEYRRLYSVYLNYVFAY 651
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 424 bits (1090), Expect = e-120
Identities = 284/706 (40%), Positives = 383/706 (54%), Gaps = 83/706 (11%)
Query: 1 MKKSLLLSLSL--IASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLL 58
MKK++LLSLSL +SL AED+GF+ S GYQIGEAVQ VKNTG L+NL D+Y+ L+ L
Sbjct: 1 MKKTILLSLSLSLASSLLHAEDNGFFVSAGYQIGEAVQMVKNTGELKNLNDKYEQLSQSL 60
Query: 59 NQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVI 118
Q L + A+ A+ A+ +L S A N + TSP Y + + + W +
Sbjct: 61 AQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKETSPIYNTAQAVITSVLAFWSLY 120
Query: 119 ALFIGCGPGPTNNQSYQSFGNTPALNGTTTTCNQAYGTGPNGILSIDEYQKLNQAYQIIQ 178
A GN AL+ T N + I L Q + +
Sbjct: 121 A------------------GN--ALSFHVTGLNDGSNSPLGRIHRDGNCTGLQQCFMSKE 160
Query: 179 TALNQNQGGGMPALNDTTKTGVVNIQQTNYRTTTQNNIIEHYYTENGKEIPVSYSGGSSF 238
T D KT N+Q+ Q N+ E + S G
Sbjct: 161 TY-------------DKMKTLAENLQKA------QGNLCAL------SECSSNQSNGGKT 195
Query: 239 SPTIQLTYHNNAENLLQQAAT------IMQVLITQKPHVQTSNGGKAWGLSSTPGNVMDI 292
S T L +L++Q I+ +T KP NG G ++ G+V D
Sbjct: 196 SMTTALQTAQQLMDLIEQTKVSMVWKNIVIAGVTNKP-----NGA---GAITSTGHVTDY 247
Query: 293 FGPSFNAINEMIKNAQTALAKTQQLNANENAQITQPNNFNPYTSKDKGFAQEMLNRAEAQ 352
FN I M+ Q AL +Q N + Q+ Q T+++ FA+++ A+ Q
Sbjct: 248 --AVFNNIKAMLPILQQALTLSQS-NHTLSTQL-QARAMGSQTNRE--FAKDIYALAQNQ 301
Query: 353 AEILNLAKQVANNFHSIQGPIQGDLEEC--KAGSAGVITNNTWGSGCAFVKETLNSLEQH 410
+IL+ A + N F+SI LE K G N + KE +N+++ +
Sbjct: 302 KQILSNASSIFNLFNSIPKDQLKYLENAYLKVPHLGKTPTNPYRQNVNLNKE-INAVQDN 360
Query: 411 TAYYGNQVNQDRALAQTILNFK----EALNTLNKDSKAINSGISNLPNAKSLQNMTHATQ 466
A YGN+++ ++A+ + N K E + T N D+K ++ IS LP + N+T+
Sbjct: 361 VANYGNRLDSALSVAKDVYNLKSNQTEIVTTYN-DAKNLSEEISKLPYNQV--NVTNIVM 417
Query: 467 NP-NSPEGLLTYSLDSSKYNQLQTIAQELGKNPFRRFGVIDFQNNNGAMNGIGVQVGYKQ 525
+P +S G Y ++ + + L + NPF++ G+I QNNNGA+NG+GVQVGYKQ
Sbjct: 418 SPKDSTAG--QYQINPEQQSNLNQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQ 475
Query: 526 FFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNN 585
FFG+ + WGLRYYGFFDYNH YIKS+FFNS+SD+WTYG G D L NFIND T KNN
Sbjct: 476 FFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNFINDSITR---KNN 532
Query: 586 KLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKKD 645
KLSVGLFGG LAGT+WLNSQ +NLT N Y+A V+ SNFQFLF+LGLR NLA KKKD
Sbjct: 533 KLSVGLFGGIQLAGTTWLNSQYMNLTAFNNPYSAKVNASNFQFLFNLGLRTNLATAKKKD 592
Query: 646 SDHAAQHGIELGFKIPTINTNYYSFMGAKLEYRRMYSLFLNYVFAY 691
S+ +AQHG+ELG KIPTINTNYYSF+G KLEYRR+YS++LNYVFAY
Sbjct: 593 SERSAQHGVELGIKIPTINTNYYSFLGTKLEYRRLYSVYLNYVFAY 638
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 293 bits (750), Expect = 1e-80
Identities = 170/407 (41%), Positives = 227/407 (55%), Gaps = 28/407 (6%)
Query: 298 NAINEMIKNAQTALAKTQQLNANENAQITQPNNFNPYTSKDKGFAQEMLNRAEAQAEILN 357
N N+ + +A ++ Q+ A+ A + ++ Q L +I N
Sbjct: 92 NTANQAVSSALSSAVGMWQVIASNLANNSLSSSEYEKLKATSQLLQNTLENKNNNLKIEN 151
Query: 358 LAKQVANNFHSIQGPIQGDLEECKAGSAGVITNNTWGSGCAFVKETLNSLEQHTAYYGNQ 417
Q+ +I +Q G+ NT G+ CA T N++
Sbjct: 152 DYDQLLTQASTIINTLQSQCPGVDGGNGKPWGINTSGNACAIFGSTFNAINSMIDSAKKA 211
Query: 418 VNQDRALAQTILNFKEALNT------LNKDSKAINSGISNLP--NAKSLQNMTHATQNPN 469
R A N + A LN+ S IN IS L N +++ N T N
Sbjct: 212 AADARRTAPESPNQQNAFTNADFNKNLNQVSSVINDTISYLKGDNLETIYNTIQKTPNSK 271
Query: 470 SPEGLLT-----YSLDSSKYNQLQTIAQELGKNPFRRFGVIDFQNNNGAMNGIGVQVGYK 524
+ L++ YSL+ ++Y+Q QT +E G NPFR G+I+ Q+NNGAMNG+GVQ+GYK
Sbjct: 272 GFQSLVSRSSYSYSLNETQYSQFQTTTKEFGHNPFRSVGLINSQSNNGAMNGVGVQLGYK 331
Query: 525 QFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKN 584
QFFGK + +G+RYYGFFDYN+AYIKSNFFNSAS+V+TYG G D L NFIN + +N
Sbjct: 332 QFFGKNKFFGIRYYGFFDYNYAYIKSNFFNSASNVFTYGAGSDLLLNFINGGS----DRN 387
Query: 585 NKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKK 644
K+S G+FGG ALAGT+WLN+Q NL + N Y+A ++ +NFQFLF+ GLR+
Sbjct: 388 RKVSFGIFGGIALAGTTWLNNQSANLKITNSAYSAKINNTNFQFLFNTGLRL-------- 439
Query: 645 DSDHAAQHGIELGFKIPTINTNYYSFMGAKLEYRRMYSLFLNYVFAY 691
HGIELG KIPTINTNYYSFMGAKL YRR+YSL+LNYV AY
Sbjct: 440 ---QGIHHGIELGVKIPTINTNYYSFMGAKLAYRRLYSLYLNYVLAY 483
Score = 132 bits (331), Expect = 4e-32
Identities = 116/338 (34%), Positives = 155/338 (45%), Gaps = 105/338 (31%)
Query: 1 MKKSLLLSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLNQ 60
MKK++LLSL +++SL AE+DG Y SVGYQIGEA Q VKNTG +Q +++ Y+NLNNLL +
Sbjct: 1 MKKTILLSL-MVSSLF-AENDGVYMSVGYQIGEAAQMVKNTGEIQKVSNAYENLNNLLTR 58
Query: 61 YNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIAL 120
YN L ++T S+ AIDNL SA L TT + A QAV+ AL++AVGMWQVIA
Sbjct: 59 YNELKQ--TASNTDSSTAQAIDNLEKSASRL--KTTPNTANQAVSSALSSAVGMWQVIAS 114
Query: 121 FIGCGPGPTNNQSYQSFGNTPALNGTTTTCNQAYGTGPNGILSIDEYQKLNQAYQIIQTA 180
+ N LS EY+KL Q++Q
Sbjct: 115 NLA-----------------------------------NNSLSSSEYEKLKATSQLLQNT 139
Query: 181 LNQNQGGGMPALNDTTKTGVVNIQQTNYRTTTQNNIIEHYYTENGKEIPVSYSGGSSFSP 240
L +N+ + ND +
Sbjct: 140 L-ENKNNNLKIENDYDQL------------------------------------------ 156
Query: 241 TIQLTYHNNAENLLQQAATIMQVLITQKPHVQTSNGGKAWGLSSTPGNVMDIFGPSFNAI 300
LT + N LQ +Q P V N GK WG+ +T GN IFG +FNAI
Sbjct: 157 ---LTQASTIINTLQ----------SQCPGVDGGN-GKPWGI-NTSGNACAIFGSTFNAI 201
Query: 301 NEMIKNAQTALAKTQQLNANENAQITQPNNFNPYTSKD 338
N MI +A+ A A ++ A E+ PN N +T+ D
Sbjct: 202 NSMIDSAKKAAADARR-TAPES-----PNQQNAFTNAD 233
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 144 bits (364), Expect = 6e-36
Identities = 178/721 (24%), Positives = 281/721 (38%), Gaps = 78/721 (10%)
Query: 4 SLLLSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLNQYNY 63
S LL L + L AEDDGF+ V YQ AVQ+V N+G LN + Y
Sbjct: 14 SSLLPLFFLNPLM-AEDDGFFMGVSYQTSLAVQRVDNSG-----------LNASQDASTY 61
Query: 64 LN-SLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIALFI 122
+ + + L S + ++ + L P+ + + A G Q
Sbjct: 62 IRQNAIALESAAVPLAYYLEAMGQQTRVLMQMLCPDPSKRCLLYAGGYQNG--QNNNGDT 119
Query: 123 GCGPGPTN-NQSYQSFGNTPALNGTTTTCNQAYGTGPNGILSIDEYQKLNQAYQIIQTAL 181
G P N N ++ LN T + P + + + + Q AL
Sbjct: 120 GNNPPRGNVNATFDMQSLVNNLNKLTQLIGETLIRNPENLPNSKVFN-VKFGNQSTVIAL 178
Query: 182 NQNQGGGMPALNDTTKTGVV----NIQQTNYRTTTQNN--------IIEHYYTENGKEIP 229
+ M ALN+ + N TN +T +N +++H + +
Sbjct: 179 PEGLANTMDALNNDITNALTTLWYNQTLTNKSFSTPSNTSVNFSPQVLQHLLQDG---LA 235
Query: 230 VSYSGGSSFSPTIQLTYHNNAENLLQQAATIMQVLI---------TQKPHVQTSNGGKAW 280
+ + + S Q T N A+++ Q A I Q L+ +K T N KA
Sbjct: 236 TANNNQTICSTQNQCTATNEAKSIAQNAQNIFQALMQAGILGGLANEKQFGFTYN--KAP 293
Query: 281 GLSSTPGNVMDIFGPSFNAINEMIKNAQTALAKTQQLNANENAQITQPNNFNPYTSKDKG 340
S + GP + N+ A + N Q T + Y D
Sbjct: 294 NGSDSQQGYQSFSGPGYYTKNDNTTQAPLKALPAGATIGSGNGQYTYHPSSAVYYLADSI 353
Query: 341 FAQEMLNRAEAQAEILNLAKQVA-----NNFHSIQGPIQ-GDLEECKAGSAGVITNNTWG 394
A + + + + N A + A ++++ +Q I G+ + G N
Sbjct: 354 IANG-ITASMIFSGMQNFANKAAKLIGTSSYNQMQDAINYGESLLSNTVAYGDFITNWVA 412
Query: 395 SGCAFVKETLNSLEQHTAYYGNQVNQDRALAQTILNFKEALNTLNKDSKAINSGISNLPN 454
+ LN L + NQ L ++ K I + + N
Sbjct: 413 PYLDLNNKGLNFLPNYGGQLNGANNQTPQLTP---------QQAQQEQKVIMNQLEQATN 463
Query: 455 AKSLQNMTHATQNPNSPEG--LLTYSLDSSK------YNQLQTIAQELGKNPFRRFGVID 506
A + + NP SP L+ Y L SK +++QT ++ + F R ++
Sbjct: 464 APTPAQINRILANPYSPTAKTLMAYGLYRSKAVIGGVIDEMQTKVNQVYQMGFAR-NFLE 522
Query: 507 FQNNNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGM 566
+N+ MNG GV++GYKQFFGKKR +GLRYYGF+D+ +A + + + +YG G
Sbjct: 523 HNSNSNNMNGFGVKMGYKQFFGKKRMFGLRYYGFYDFGYAQFGTESSLVKATLSSYGAGT 582
Query: 567 DALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTSNF 626
D LYN K + +G F G LAG +W + L ++G + TS F
Sbjct: 583 DFLYNVFTRKR-----GTEAIDIGFFAGIQLAGQTWKTN---FLDQVDGNHLKPKDTS-F 633
Query: 627 QFLFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTINTNYYSFMGAKLEYRRMYSLFLN 686
QFLFDLG+R N ++ + +Q GIE G KIP + YY G +YRR +S ++
Sbjct: 634 QFLFDLGIRTNFSKIAHQKRSRFSQ-GIEFGLKIPVLYHTYYQSEGVTAKYRRDFSFYVG 692
Query: 687 Y 687
Y
Sbjct: 693 Y 693
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 144 bits (364), Expect = 6e-36
Identities = 104/327 (31%), Positives = 162/327 (48%), Gaps = 39/327 (11%)
Query: 387 VITNNTWGSGCAFVKETLNSLEQHTAYYGNQVNQDRALAQTILNFKEALNTLNKDSKAIN 446
++ N+ GS V E + ++ YG+Q N+ LA + AL +N DS ++
Sbjct: 162 LVNNSNNGSNNGVVPEYVGIIK---VLYGSQ-NEFSLLATESVALLNALTRVNLDSNSVF 217
Query: 447 SGISNLPNAKSLQNMTHATQNPNSPEGLLTYSLDSSKYNQLQTIAQELG----------- 495
+ L L N T + + E L + ++TI+ +
Sbjct: 218 --LKGLLAQMQLFNDTSSAKLGQIAENLKNGGAGAMLQKDVKTISDRIATYQENLKQLGG 275
Query: 496 --KN---PFR-RFGVIDFQNNNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIK 549
KN P+ +FG + +G +NG G+QVGYKQFFG K+N GLRYY FFDY +
Sbjct: 276 MLKNYDEPYLPQFGP-GTSSQHGVINGFGIQVGYKQFFGSKKNIGLRYYAFFDYGFTQLG 334
Query: 550 SNFFNSA--SDVWTYGVGMDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQ 607
S NSA ++++TYG G D L+N + + L+VG+FGG +AG +W +S +
Sbjct: 335 S--LNSAVKANIFTYGAGTDFLWNIFRR-----VFSDQSLNVGVFGGIQIAGNTWDSSLR 387
Query: 608 VNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKK---DSDHAAQHGIELGFKIPTIN 664
+ + + +NFQFLF+LGLR + A + + + QHG+E G KIP IN
Sbjct: 388 ---GQIENSFKEYPTPTNFQFLFNLGLRAHFASTMHRRFLSASQSIQHGMEFGVKIPAIN 444
Query: 665 TNYYSFMGAKLEYRRMYSLFLNYVFAY 691
Y GA ++YRR+Y+ ++NY +
Sbjct: 445 QRYLKANGADVDYRRLYAFYINYTIGF 471
Score = 46.2 bits (108), Expect = 3e-06
Identities = 24/43 (55%), Positives = 30/43 (68%), Gaps = 2/43 (4%)
Query: 1 MKKSLLLSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGA 43
+K +LL SL L S++ AEDDGFY VGYQIG A Q + N G+
Sbjct: 29 LKTALLFSLPL--SVALAEDDGFYMGVGYQIGGAQQNINNKGS 69
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 144 bits (362), Expect = 1e-35
Identities = 142/496 (28%), Positives = 221/496 (43%), Gaps = 74/496 (14%)
Query: 222 TENGKEIPVSYSGGSSFSPTIQLTYHNNAENLLQQAATIMQVLITQKPHVQTSNGGKAWG 281
T N I ++ +GG+ + T+ + N NL+ T+ + Q + NG A
Sbjct: 80 TTNNTNINIAGTGGN-VAGTLGNLFMNQLGNLIDLYPTLKTNNLHQCGSTNSGNGATA-- 136
Query: 282 LSSTPGNVMDIFGPSFNAINEMIKNAQTALAKTQQLNANENAQITQPNNFNPYTSKDKGF 341
+ N F + NEM+ + +T L+ N + I Q +N TS +
Sbjct: 137 --AAATNNSPCFQGNLALYNEMVDSIKT-------LSQNISKNIFQGDNNT--TSANLSN 185
Query: 342 AQEMLNRAEAQAEILNLAKQVANNFHSIQGPIQGDLEECKAGSAGVITNNT---WGSGCA 398
LN A +N N + G+ NNT + +G
Sbjct: 186 QLSELNTASVYLTYMNSFLNANNQ------------------AGGIFQNNTNQAYENGVT 227
Query: 399 FVKETLNSLEQHTAYYGNQVNQ-------DRALAQTILNFKEALNTLNKD--SKAINSGI 449
++ L+Q + G + D ALAQ + N A N L+ + + + +
Sbjct: 228 -AQQIAYVLKQASITMGPSGDSGAAGAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIV 286
Query: 450 SNLPNAKSLQNMTHATQNPNSPEGLLTY--SLDSSKYNQL-----QTIAQ------ELGK 496
+N NA +L N + + NS ++Y ++D ++ QL T+A+ EL
Sbjct: 287 NNSQNALTLANNANIS---NSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVTALNNELKA 343
Query: 497 NPFRRFGVIDFQNNNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSA 556
NP+ + A NG ++GYKQFFG+ +N GLRYYGFF YN A + + +
Sbjct: 344 NPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQ 403
Query: 557 SDVWTYGVGMDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGI 616
++ TYGVG D LYN + + L+ G FGG LAG ++++ T+ N
Sbjct: 404 VNLLTYGVGTDVLYNVFSRS-----FGSRSLNAGFFGGIQLAGDTYIS------TLRNSP 452
Query: 617 YNANVST-SNFQFLFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTINTNYYSFMGAKL 675
A+ T + FQFLFD+GLRMN KK H QH IE+G +IPTI YY GA++
Sbjct: 453 QLASRPTATKFQFLFDVGLRMNFGILKKDLKSH-NQHSIEIGVQIPTIYNTYYKAGGAEV 511
Query: 676 EYRRMYSLFLNYVFAY 691
+Y R YS++ Y +A+
Sbjct: 512 KYFRPYSVYWVYGYAF 527
Score = 55.1 bits (131), Expect = 6e-09
Identities = 58/218 (26%), Positives = 88/218 (39%), Gaps = 48/218 (22%)
Query: 5 LLLSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLNQYNYL 64
L L+LSL + AE+DG + + GY++G+ VQQVKN G + + + L LLN
Sbjct: 28 LSLALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKI-----KAEELAGLLNSTTTN 82
Query: 65 NSLVNLASTPSAITGAIDNL---------------------------SSSAINLTSATTT 97
N+ +N+A T + G + NL S + +AT
Sbjct: 83 NTNINIAGTGGNVAGTLGNLFMNQLGNLIDLYPTLKTNNLHQCGSTNSGNGATAAAATNN 142
Query: 98 SPAYQAVALALNAAVGMWQVIALFIGCGPGPTNNQSYQSFGNTPA--LNGTTTTCNQA-- 153
SP +Q N V + ++ I + +Q NT + L+ + N A
Sbjct: 143 SPCFQGNLALYNEMVDSIKTLSQNI-------SKNIFQGDNNTTSANLSNQLSELNTASV 195
Query: 154 YGTGPNGILSIDEYQKLNQAYQIIQTALNQNQGGGMPA 191
Y T N L+ + NQA I Q NQ G+ A
Sbjct: 196 YLTYMNSFLNAN-----NQAGGIFQNNTNQAYENGVTA 228
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 143 bits (360), Expect = 2e-35
Identities = 180/731 (24%), Positives = 290/731 (39%), Gaps = 116/731 (15%)
Query: 19 EDDGFYTSVGYQIGEAVQQVKNT--GALQNLADRYDNLNNLLNQYNYLNSLVNLASTPSA 76
E++ T+ G Q +T GAL + N + Q + N N+ + +A
Sbjct: 565 EEEAKTTNFNQSSGPTTQSSNSTVMGALNTVLQNVSNFQQSI-QSAFQNQENNIQAWANA 623
Query: 77 ITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIALFIGCGPGPTN---NQS 133
+ + + + NLT+ L + +Q+I P N NQS
Sbjct: 624 LYNTSNPNGNQSQNLTTNNNQD-------LRIQLRANFYQLINTINQQVPTDMNALINQS 676
Query: 134 YQSFGNTPALNGTTTTCNQAYGTGPNGILSIDEYQKLNQAYQIIQTALNQN-----QGGG 188
Q+ + + + T C A G G +G ++ Y +Q+AL Q G
Sbjct: 677 QQTQQTSGSASTTNNAC--ASGMGSSGNWCYQQWSDSKAYYSGLQSALGYQTQATTQNGS 734
Query: 189 MPALNDTTKTGVVNIQQTNYRTTTQNNIIEHYYTENGKEIPVSYSGGSSFSPTIQLTYHN 248
N T N+QQ T T ++ T N K + +GGSS + T Q+ N
Sbjct: 735 SGGSNIT-----YNVQQI---TLTSGGLLNQIIT-NLKSVNGGSNGGSSGNGTSQI---N 782
Query: 249 NAENLLQQAATIMQVLITQKPHVQTSNGGKAWGLSSTPGNVMDIFGPSFNAINEMIKNAQ 308
A +L A+ GK +S+ S N+ N N
Sbjct: 783 TAYQMLTDASD-----------------GKLGTYNSSN---------SSNSSNSGNNNGY 816
Query: 309 TALAKTQQLNANENAQITQPN---NFNPYTSKDKGFAQEMLNRAEAQAEILNLA---KQV 362
T T N + +PN N T+ Q++ N A+ A I+ + K V
Sbjct: 817 TPCNSTNGSNGTSGSNCYEPNKQQNATTATTTTDSNLQKVYNDAQKIANIIASSGNNKGV 876
Query: 363 ANN----FHSIQGPIQGDLEECKAGSAGVITNNTWG----------SGCAFVKETLNSLE 408
N F +++ C GS+G + + G +G + +N L
Sbjct: 877 ENGLKQFFEALKSNSSSLSNLCGNGSSGSSSTCSGGLINLLGAIPTNGVSDTNNLINLLT 936
Query: 409 QHTAYYGNQVNQDRALAQTILN-FKEALNTLNKDSKAINSGISNLPNA--KSLQNMTHAT 465
+ G N+D ++ ++ + F+ + +++ +A+ + IS PNA LQ +T T
Sbjct: 937 EFIKTAGFIQNKDSNVSTSLTSAFQAITSAISQGFQALQNDIS--PNAILTLLQEITSNT 994
Query: 466 QNPNSPEGLLTYSLDSSKY---------------NQLQTI---AQELGKNPFRRFGVIDF 507
S L L + NQ+Q A G P
Sbjct: 995 TTIQSFSQTLRQLLGDKTFFMVQQKLIDAMINARNQVQNAQNQANNYGSQPVLSQYAAAK 1054
Query: 508 QNNNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMD 567
+G NG+GV +GYK FFGK R GLR+Y FFDY + I + ++++ YGVG D
Sbjct: 1055 STQHGMSNGLGVGIGYKYFFGKARKLGLRHYFFFDYGFSEIGLANQSVKANIFAYGVGTD 1114
Query: 568 ALYN-FINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNAN-VSTSN 625
L+N F NT L+ GLF G L G +WL+S + +++ NAN + ++N
Sbjct: 1115 FLWNLFRRTYNT------KALNFGLFAGVQLGGATWLSS--LRQQIIDNWGNANDIHSTN 1166
Query: 626 FQFLFDLGLRMNLARPKK-----KDSDHAAQHGIELGFKIPTINTNYYSFMGAKLEYRRM 680
FQ + G+R N A K+ + +Q +E G K+P IN Y + GA + YRR+
Sbjct: 1167 FQVALNFGVRTNFAEFKRFAKKFHNQGVISQKSVEFGIKVPLINQAYLNSAGADVSYRRL 1226
Query: 681 YSLFLNYVFAY 691
Y+ ++NY+ +
Sbjct: 1227 YTFYINYIMGF 1237
Score = 45.1 bits (105), Expect = 6e-06
Identities = 116/560 (20%), Positives = 196/560 (34%), Gaps = 94/560 (16%)
Query: 2 KKSLLLSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLNQY 61
K + LI SL AED+G+Y SVGYQIG Q + N L+N N+ N + Q
Sbjct: 4 KAKKFIPFFLIGSLL-AEDNGWYMSVGYQIGGTQQFINNKQLLEN-----QNIINSITQ- 56
Query: 62 NYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALN---------AAV 112
S +N+A + + A+ + T + ++ LN ++
Sbjct: 57 ----SAINIAGPTTGLITLSSQTVIDALGYGVSNTVGNQLEGISNILNQIGKRKDFYSSR 112
Query: 113 GMWQVIALFIGCGPGPTNNQSYQSFGNTPALNGTTTTCNQAYGTGPNGILSIDEYQKLNQ 172
+ + IG +++ S L+ T + +Q N I +++ N
Sbjct: 113 QISSISQQIIGLKGSSDPLKAHSSQITAKLLSNTQSAFDQGIALSSNIISAVNSLNPSNN 172
Query: 173 AYQIIQTALNQNQGGGMPALNDTTKTGVVNIQQTNYRTTTQNNIIEH------------- 219
+ ++ A QN M L + + T Y + +N+ +
Sbjct: 173 SQEV--KAQLQNTAQSMAELLQQIEHSITKTTSTTYAQSLLSNLTDAVNASSNNTTYVSA 230
Query: 220 ------------YYTENGKEIPVSYSGGSSFSPTIQLTYHNNAENLLQQAATIMQVLITQ 267
+ T + ++ G F PT L ++ + QQ ++ T
Sbjct: 231 LVNALNTLGVGVFPTTTSTHVVLNPPGQVVFYPTNSLLGSTSSNSNNQQQYNNTLLMNTL 290
Query: 268 KPHVQTSNGGKAWGLSSTPGNVMDIFGPSFNAINEMIKNAQTALAKTQQLNANENAQITQ 327
+ + T+N G ++ + + I+N T LA T N Q+
Sbjct: 291 QGELSTNNQNNPNGCAN-----------QIQCLEQFIQNL-TPLAATPTSTNQANQQV-- 336
Query: 328 PNNFNPYTSKDKGFAQEMLNRAEAQAEILNLAK-QVANNFHSIQGPIQGDLEECKAGSAG 386
K + A L+ NL A NF + Q I+ K
Sbjct: 337 ----QAIAQKLQSVAINALDNNAINNTTYNLNNLHNALNFQAYQSTIEQYNNALKQ---- 388
Query: 387 VITNNTWGSGCAFVKETLNSLEQHTAYYGNQVNQDRALAQTILNFKEALNTLNKD-SKAI 445
I+ ++ +K T N+ Y V D+ + + A +L+ D S I
Sbjct: 389 -ISWISFSEPKNLLKNTSNN------YQIGTVTNDQGQNISAYDCTSATGSLSSDASSGI 441
Query: 446 N-SGISNLPNAKSLQNMTHAT---QNPNSPE--GLLTYSLDS---SKYNQLQTIAQELGK 496
+ S S+ N S N AT Q N E G+ +++L S S YN L+T + L K
Sbjct: 442 SCSATSSTNNTNSFDNSLVATSKVQTINGKEQIGVNSFNLVSQVWSVYNSLKTSEENLQK 501
Query: 497 NPFRRFGVIDFQNNNGAMNG 516
N NNG+ +G
Sbjct: 502 N-------AKILCNNGSQSG 514
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 139 bits (350), Expect = 2e-34
Identities = 113/395 (28%), Positives = 179/395 (44%), Gaps = 55/395 (13%)
Query: 297 FNAINEMIKNAQTALAKTQQLNANENAQITQPNNFNPYTSKDKGFAQEMLNRAEAQAEIL 356
FNA+N+ ++ TA A + + S + ++Q+ + + Q IL
Sbjct: 181 FNAMNKALEKNGTATANSTSSTSGATG------------SDGQTYSQQAIQYLQGQQNIL 228
Query: 357 NLAKQVANNFHSIQGPIQGDLEECKAGSAGVITNNTWGSGCAFVKETLNSLEQHTAYYGN 416
N A + + LE + A I N + S AF ++Q Y N
Sbjct: 229 NNAANLLKQDELL-------LEAFNSAVAANIGNKEFNSA-AFTGLVQGIIDQSQLVY-N 279
Query: 417 QVNQDRALAQTILNFKEALNTLNKDSKAINSGISNLPNAKSLQNMTHATQNPNSPEGLLT 476
++ + NT++ A+N+ N A ++Q A+Q PN+ L
Sbjct: 280 ELTK---------------NTIS--GSAVNNAGINSNQANAVQG--RASQLPNA---LYN 317
Query: 477 YSLDSSKYNQLQTIAQELGKNPFRRFGVIDFQNNNGAMNGIGVQVGYKQFFGKKRNWGLR 536
+ K N L + + P R G N +NG +VGYKQFFGKKRN GLR
Sbjct: 318 VQVTLDKINALNNQVRSMPYLPQFRAGNSRATN---ILNGFYTKVGYKQFFGKKRNIGLR 374
Query: 537 YYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKLSVGLFGGFA 596
YYGFF YN A + + ++TYGVG D LYN + +N + +G F G
Sbjct: 375 YYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSY-----QNRSVDMGFFSGIQ 429
Query: 597 LAGTSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKKDSDHAAQHGIEL 656
LAG ++ ++ + + N + ++ ++FQFLFD G+RMN + K + H QH +E
Sbjct: 430 LAGETFQSTLRDD---PNVKLHGKINNTHFQFLFDFGMRMNFGKLDGKSNRH-NQHTVEF 485
Query: 657 GFKIPTINTNYYSFMGAKLEYRRMYSLFLNYVFAY 691
G +PTI YY G ++Y R YS++ +Y +++
Sbjct: 486 GVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF 520
Score = 61.2 bits (147), Expect = 8e-11
Identities = 96/358 (26%), Positives = 143/358 (39%), Gaps = 60/358 (16%)
Query: 3 KSLLLSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLNQYN 62
++L LSL+L AS+S AEDDG + +VGYQ+G+ +Q V+N G ++ D L LN +
Sbjct: 6 RTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGAKS-----DELARELNA-D 59
Query: 63 YLNSLVNLASTPSAITGAIDNLSSSAI-NLTSATTTSPAYQAVA--LALNAAVGMWQVIA 119
N+++N +T + GA+ N S + +L A T V+ L+ AVG A
Sbjct: 60 VTNNILN-NNTGGNVAGALSNAFSQYLYSLLGAYPTKLNGNDVSANALLSGAVGSGTCAA 118
Query: 120 LFIGCGPGPT-NNQSYQSFGN---TPALNG---TTTTCNQAYGTG---PNGILSIDEYQK 169
G G T N QS + P+L +T YGT PN +
Sbjct: 119 --AGTAGGTTLNTQSACTAAGYYWLPSLTDRILSTIGSQTNYGTNTNFPNMQQQLTYLNA 176
Query: 170 LNQAYQIIQTALNQNQGGGMPALNDTTKT-GVVNIQQTNYRTTTQNNIIEHYYTENGKEI 228
N + + AL +N G N T+ T G Y +
Sbjct: 177 GNVFFNAMNKALEKN---GTATANSTSSTSGATGSDGQTY-----------------SQQ 216
Query: 229 PVSYSGGSSFSPTIQLTYHNNAENLLQQAATIMQVLITQKPHVQTSNGGKAWGLSSTPGN 288
+ Y G Q NNA NLL+Q +++ V + G K + ++ G
Sbjct: 217 AIQYLQG-------QQNILNNAANLLKQDELLLEAF---NSAVAANIGNKEFNSAAFTGL 266
Query: 289 VMDIFGPSFNAINEMIKNAQTALA------KTQQLNANENAQITQPNN-FNPYTSKDK 339
V I S NE+ KN + A + Q NA + PN +N + DK
Sbjct: 267 VQGIIDQSQLVYNELTKNTISGSAVNNAGINSNQANAVQGRASQLPNALYNVQVTLDK 324
>ref|NP_222958.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 132 bits (331), Expect = 4e-32
Identities = 77/214 (35%), Positives = 114/214 (52%), Gaps = 15/214 (7%)
Query: 476 TYSLDSSKYNQLQTIAQELGKNPF--RRFGVIDFQNNNGAMNGIGVQVGYKQFFGKKRNW 533
T ++ ++ Q ++ A L K + F + D+Q+ +MNG G ++GYKQFF K+N
Sbjct: 275 TINIINAVLGQFESSASSLYKISYIPNLFSLKDYQS--ASMNGFGAKMGYKQFFTHKKNI 332
Query: 534 GLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKLSVGLFG 593
GLRYYGF DY +A +++ TYGVG D LYN + + ++GLF
Sbjct: 333 GLRYYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYNVYERSR-----RRERTTIGLFF 387
Query: 594 GFALAGTSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKKDSDHAAQHG 653
G +AG +W N+T + +V +S+FQFLFDLG+R N A K + H G
Sbjct: 388 GAQIAGQTW----STNVTNLLSGQRPDVKSSSFQFLFDLGVRTNFA--KTNFNKHRLDQG 441
Query: 654 IELGFKIPTINTNYYSFMGAKLEYRRMYSLFLNY 687
IE G KIP I Y++ G+ Y R +S ++ Y
Sbjct: 442 IEFGVKIPVIAHKYFATQGSSASYMRNFSFYVGY 475
Score = 36.2 bits (82), Expect = 0.003
Identities = 19/44 (43%), Positives = 26/44 (58%)
Query: 2 KKSLLLSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQ 45
KK++ LSL SL AE+DG + + YQ A Q++KN G Q
Sbjct: 7 KKTIALSLLASMSLCNAEEDGAFFVIDYQTSLARQELKNPGFTQ 50
>ref|NP_223332.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 270
Score = 120 bits (302), Expect = 9e-29
Identities = 75/202 (37%), Positives = 101/202 (49%), Gaps = 44/202 (21%)
Query: 514 MNGIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNS------------------ 555
M G+G+ VGYKQFFG+KR +G RYYGF DY HA +N S
Sbjct: 89 MQGLGLTVGYKQFFGEKRWFGARYYGFMDYGHAVFGANALTSDNGGVCKLNEPCATKVGT 148
Query: 556 ---ASDVWTYGVGMDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTM 612
SD++TYGVG+D LYN IN ++ +F G F G +AG SW N+ L
Sbjct: 149 MGNLSDMFTYGVGIDTLYNVINKEDASF---------GFFFGAQIAGNSWGNTTGAFLET 199
Query: 613 MNGIYNANVS--TSNFQFLFDLGLRMNLARPKKKDSDHAAQH-GIELGFKIPTINTNYYS 669
+ + + S + FQFLF+LG+R H QH + G KIPTIN Y++
Sbjct: 200 KSPYKHTSYSLDPAIFQFLFNLGIR-----------THIGQHQEFDFGVKIPTINVYYFN 248
Query: 670 FMGAKLEYRRMYSLFLNYVFAY 691
YRR YSL++ Y + +
Sbjct: 249 HGNLSFTYRRQYSLYVGYRYNF 270
Score = 28.5 bits (62), Expect = 0.59
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 17 RAEDDGFYTSVGYQIGEAVQQVKN 40
+ E + +Y + YQ+G+A Q VKN
Sbjct: 43 KGEKNAWYLGISYQVGQASQSVKN 66
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 108 bits (271), Expect = 3e-25
Identities = 89/317 (28%), Positives = 152/317 (47%), Gaps = 42/317 (13%)
Query: 400 VKETLNSLEQHTAYYGNQVNQDRALAQTILNFKEAL--NTLNKDSKAI--NSGISNLPN- 454
VK + ++ Y N + + L T + +TL K + + G+++ P
Sbjct: 72 VKNEITNMPNTFNYINNALKNNAKLTPTEKQAETYYLQSTLQNIEKIVMLSGGVASNPKL 131
Query: 455 AKSLQNMTHATQNP-NSPEGL--LTYSLDSSKYNQLQTIAQELGK--NPFRRFGVIDFQN 509
A++L+ M NP E L L S+ + L +++ ++ + N +
Sbjct: 132 AQALEKMQEPITNPLELVENLKNLELQFSQSQNSMLSSLSSQIAQISNSLNALDPSSYSK 191
Query: 510 NNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDY---NHAYIKSNFFN-SASDVWTYGVG 565
N +M G+G+ VGYK FF KK+N G RYY F+DY N ++ + F + YG+G
Sbjct: 192 NVSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLG 251
Query: 566 MDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNS-QQVNLTMMNGI------YN 618
+D L+NFI++ + SVG + GFALAG+SW+ S + ++ M+ I Y
Sbjct: 252 IDYLFNFIDNAQKH-------SSVGFYVGFALAGSSWVGSGLGMWVSQMDFINNYLTDYR 304
Query: 619 ANVSTSNFQFLFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTINTNYYSFMG----AK 674
A + TS FQ + G+R+N+ R +G E+G KIP ++Y G A
Sbjct: 305 AKMHTSFFQIPLNFGVRVNVDR----------HNGFEMGLKIPLAVNSFYETHGKGLNAS 354
Query: 675 LEYRRMYSLFLNYVFAY 691
L ++R+ ++YV+++
Sbjct: 355 LFFKRLVMFNVSYVYSF 371
Score = 42.0 bits (97), Expect = 5e-05
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 4 SLLLSLSLIASLSRAEDDGFYTSVG--YQIGEAVQQVKNTGALQNLADRYDNLNNLLNQY 61
SL LSLSL S S AE++G Y SVG Y I AV+ N Q N N + +
Sbjct: 11 SLFLSLSLFLSFSIAEENGAYASVGFEYSISHAVEH-NNPFLNQERIQTISNAQNKIYKL 69
Query: 62 NYL-NSLVNLASTPSAITGAIDN 83
N + N + N+ +T + I A+ N
Sbjct: 70 NQVKNEITNMPNTFNYINNALKN 92
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 108 bits (271), Expect = 3e-25
Identities = 71/197 (36%), Positives = 98/197 (49%), Gaps = 34/197 (17%)
Query: 509 NNNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYI-----KSNFFNSASDV--WT 561
NN G M G+ GYK FFGK + +G R YG++ YNHA + K + AS V +T
Sbjct: 73 NNYGQMYGVDAMAGYKWFFGKTKRFGFRTYGYYSYNHANLSFVGSKLGIMDGASQVNNFT 132
Query: 562 YGVGMDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYN--- 618
YGVG DALYNF K G N + GLF GF L G S++ + L I N
Sbjct: 133 YGVGFDALYNFYESKE----GYN---TAGLFVGFGLGGDSFIVQGESYLKSQMQICNNTA 185
Query: 619 ---ANVSTSNFQFLFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTINTNYYSFMG--- 672
A+++TS FQ + G R N ++ GIE+GFK+P +Y G
Sbjct: 186 GCSASMNTSYFQMPVEFGFRSNFSK----------HSGIEVGFKLPLFTNQFYKERGVDG 235
Query: 673 -AKLEYRRMYSLFLNYV 688
+ Y+R +S++ NY+
Sbjct: 236 SVDVFYKRNFSIYFNYM 252
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 107 bits (267), Expect = 1e-24
Identities = 88/317 (27%), Positives = 151/317 (46%), Gaps = 42/317 (13%)
Query: 400 VKETLNSLEQHTAYYGNQVNQDRALAQTILNFKEAL--NTLNKDSKAI--NSGISNLPN- 454
VK + ++ Y N + + L T + +TL K + + G+++ P
Sbjct: 67 VKNEITNMPNTFNYINNALKNNAKLTPTEKQAETYYLQSTLQNIEKIVMLSGGVASNPKL 126
Query: 455 AKSLQNMTHATQNP-NSPEGL--LTYSLDSSKYNQLQTIAQELGK--NPFRRFGVIDFQN 509
++L+ M NP E L L S+ + L +++ ++ + N +
Sbjct: 127 VQALEKMQEPITNPLELVENLKNLELQFSQSQNSMLSSLSSQIAQISNSLNALDPSSYSK 186
Query: 510 NNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDY---NHAYIKSNFFN-SASDVWTYGVG 565
N +M G+G+ VGYK FF KK+N G RYY F+DY N ++ + F + YG+G
Sbjct: 187 NVSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLG 246
Query: 566 MDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNS-QQVNLTMMNGI------YN 618
+D L+NFI++ + SVG + GFALAG+SW+ S + ++ M+ I Y
Sbjct: 247 IDYLFNFIDNAQKH-------SSVGFYVGFALAGSSWVGSGLGMWVSQMDFINNYLTDYR 299
Query: 619 ANVSTSNFQFLFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTINTNYYSFMG----AK 674
A + TS FQ + G+R+N+ R +G E+G KIP ++Y G A
Sbjct: 300 AKMHTSFFQIPLNFGVRVNVDR----------HNGFEMGLKIPLAVNSFYETHGKGLNAS 349
Query: 675 LEYRRMYSLFLNYVFAY 691
L ++R+ ++YV+++
Sbjct: 350 LFFKRLVMFNVSYVYSF 366
Score = 34.3 bits (77), Expect = 0.011
Identities = 29/82 (35%), Positives = 41/82 (49%), Gaps = 5/82 (6%)
Query: 6 LLSLSLI-ASLSRAEDDGFYTSVG--YQIGEAVQQVKNTGALQNLADRYDNLNNLLNQYN 62
LLSLSL+ S AE++G Y SVG Y I AV+ N Q N N + + N
Sbjct: 7 LLSLSLLFLSYCIAEENGAYASVGFEYSISHAVEH-NNPFLNQERIQTISNAQNKIYKLN 65
Query: 63 YL-NSLVNLASTPSAITGAIDN 83
+ N + N+ +T + I A+ N
Sbjct: 66 QVKNEITNMPNTFNYINNALKN 87
>ref|NP_223027.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 245
Score = 104 bits (259), Expect = 9e-24
Identities = 62/186 (33%), Positives = 99/186 (52%), Gaps = 23/186 (12%)
Query: 511 NGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFD---YNHAYIKSNFFNSASDVWTYGVGMD 567
N NGIG+ +GY FF + GLRY+ F D Y Y K + +++ TYGVG+D
Sbjct: 78 NMGSNGIGLVMGYNHFFHPDKVLGLRYFAFLDWQGYGMRYPKGYY--GGNNMITYGVGVD 135
Query: 568 ALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWL--NSQQVNLTMMNGIYNANVSTSN 625
A++NF +F + + +G+FGG A+AG SW N Q L + N ++ V ++
Sbjct: 136 AIWNFFQG---SFYQDDIGVDIGVFGGIAIAGNSWYIGNKGQELLGITN---SSAVDNTS 189
Query: 626 FQFLFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTINTNYYSFMGAKLEYRRMYSLFL 685
FQFLF+ G + +H E+GFK PT+N YY+ K++ RR+++ ++
Sbjct: 190 FQFLFNFGFKALFVD----------EHEFEIGFKFPTLNNKYYTTDALKVQMRRVFAFYV 239
Query: 686 NYVFAY 691
Y + +
Sbjct: 240 GYNYHF 245
>ref|NP_224080.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 248
Score = 99.8 bits (247), Expect = 2e-22
Identities = 69/208 (33%), Positives = 102/208 (48%), Gaps = 54/208 (25%)
Query: 516 GIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYI----------KSNF-FNSAS------- 557
G G +VGYKQFFGKK+ +G+RYYGFFDY H +S F +NS S
Sbjct: 57 GPGFEVGYKQFFGKKKWFGMRYYGFFDYAHNRFGVMKKGIPVGESGFIYNSFSFGGNTLT 116
Query: 558 -----------DVWTYGVGMDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQ 606
+++TYGVG+D L+NF+N +N F G G LAG SW S
Sbjct: 117 ERDSYQGQYYINLFTYGVGLDTLWNFVNKENMVF---------GFVVGIQLAGDSWATSI 167
Query: 607 QVNL-TMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTINT 665
+ + + N++ S +NFQFL+ G+R ++ A + +ELG K+PTI
Sbjct: 168 SKEIGSYVKHHSNSSYSPANFQFLWKFGVRTHI----------AIHNSLELGIKVPTITH 217
Query: 666 NYYSFMGAK-----LEYRRMYSLFLNYV 688
+ K + RR+Y+ ++Y+
Sbjct: 218 RLFFITNEKGYTLQADVRRVYAFQISYL 245
>ref|NP_224112.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 388
Score = 99.0 bits (245), Expect = 4e-22
Identities = 78/267 (29%), Positives = 104/267 (38%), Gaps = 104/267 (38%)
Query: 506 DFQNNNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNS---------- 555
D N M G+GV GYK F GKKR +GLRYYGFFDY H +NF NS
Sbjct: 145 DIPGRNQPMYGLGVMTGYKHFVGKKRWFGLRYYGFFDYGH----TNFSNSRAANAISPFY 200
Query: 556 ----ASDVWTYGVGMDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQ----- 606
+D++TYG G D L+N I+ K + G F G AG +W N++
Sbjct: 201 LSDQKADMYTYGFGTDMLFNVID---------KPKATAGFFVGVNFAGNTWTNNRVGYFK 251
Query: 607 ------------------------------------QVNLTMMNGIYNANVSTSNFQFLF 630
N G NA V+ + FQFL
Sbjct: 252 DGYVYGVNTDADAYMTNADGTITCGDTTPASCNVGINPNSVYTTGKLNAKVNHTIFQFLV 311
Query: 631 DLGLRMNLARPKKKDSDHAAQHGIELGFKIPTI--------------------NTNYYSF 670
++G+R N+ HGIE G KIPT+ N N +
Sbjct: 312 NVGIRTNIFE----------HHGIEFGIKIPTLPNYFFKGSTTIRAKKQGPLENGNPTTI 361
Query: 671 MGAKLEY------RRMYSLFLNYVFAY 691
GA+ + RR YS++L YV+ +
Sbjct: 362 TGAETNFSLTQTLRRQYSMYLRYVYTF 388
>ref|NP_222838.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 286
Score = 92.0 bits (227), Expect = 4e-20
Identities = 64/209 (30%), Positives = 90/209 (42%), Gaps = 41/209 (19%)
Query: 503 GVIDFQNNNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFN-------- 554
G N A+NG G VGYK FF K +G+RYYGFFD+ +Y K +N
Sbjct: 99 GYKGLSNQQYAINGFGFVVGYKHFFKKAPQFGMRYYGFFDFASSYYKYYTYNDYGMRDAR 158
Query: 555 --SASDVWTYGVGMDALYN--FINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNL 610
S S ++ YG G D L+N N +N +F G F G A+ GTSW
Sbjct: 159 KGSQSFMFGYGAGTDVLFNPAIFNRENLHF---------GFFLGVAIGGTSW-GPTNYYF 208
Query: 611 TMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTINTNYYSF 670
+ Y + SNFQ L + G+R+ G E+G KI TI NYY+
Sbjct: 209 KDLAEEYRGSFHPSNFQVLVNGGIRLG-----------TKHQGFEIGLKIQTIRNNYYTA 257
Query: 671 MG--------AKLEYRRMYSLFLNYVFAY 691
+ + R Y+ + Y+ ++
Sbjct: 258 SADNVPEGTTYRFTFHRPYAFYWRYIVSF 286
>ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 242
Score = 87.0 bits (214), Expect = 1e-18
Identities = 64/215 (29%), Positives = 97/215 (44%), Gaps = 52/215 (24%)
Query: 508 QNNNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDYNHA---YIKSNFFNSAS------- 557
Q N + G +GY+ FF K ++GLR YGFFDY HA +K+ +NS +
Sbjct: 49 QATNATIKGFDALLGYQFFFEK--HFGLRLYGFFDYAHANSIKLKNPNYNSEAAQVASQI 106
Query: 558 --------------------DVWTYGVGMDALYNFINDKNTNFLGKNNKLSVGLFGGFAL 597
++ TYG MD + N IN N +S+G FGG L
Sbjct: 107 LGKQEINRLTNIADPRTFEPNMLTYGGAMDVMVNVIN---------NGIMSLGAFGGIQL 157
Query: 598 AGTSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKKDSDHAAQHGIELG 657
AG SWL + ++ + ++FQFLF++G R+ + + IE G
Sbjct: 158 AGNSWLMATPSFEGILVEQALVSKKATSFQFLFNVGARLRILK----------HSSIEAG 207
Query: 658 FKIPTINTN-YYSFMGAKLEYRRMYSLFLNYVFAY 691
K P + N Y + + +RR+YS ++NYVF +
Sbjct: 208 VKFPMLKKNPYITAKNLDIGFRRVYSWYVNYVFTF 242
>ref|NP_223363.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 270
Score = 85.9 bits (211), Expect = 3e-18
Identities = 63/211 (29%), Positives = 97/211 (45%), Gaps = 49/211 (23%)
Query: 511 NGAMNGIGVQVGYKQFFGKK------RNWGLRYYGFFDYNHAYIKSNFF---NSASDVWT 561
NGA+NG G+ VGYK+FF K + +G R YG FDY HA + + D+ +
Sbjct: 79 NGALNGFGLNVGYKKFFQFKSLDMTSKWFGFRVYGLFDYGHADLGKQVYAPNKIQLDMVS 138
Query: 562 YGVGMDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNS------QQV------- 608
+GVG D L + I+ N +F G+FGG A+ G +W +S +Q+
Sbjct: 139 WGVGSDLLADIIDKDNASF---------GIFGGVAIGGNTWKSSAANYWKEQIIEAKGPD 189
Query: 609 ----NLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTIN 664
N Y+ N ST FQ + G+R N+ + +G+E G ++P +
Sbjct: 190 VCTPTYCNPNAPYSTNTSTVAFQVWLNFGVRANIYK----------HNGVEFGVRVPLLI 239
Query: 665 TNYYSF--MGAKLEY--RRMYSLFLNYVFAY 691
+ S L Y +R YSL+L Y + +
Sbjct: 240 NKFLSAGPNATNLYYHLKRDYSLYLGYNYTF 270
Score = 29.3 bits (64), Expect = 0.35
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 1 MKKSLLLSL--SLIASLSRAEDDGFYTSVGYQIGEA--VQQVKNTG 42
MKK + L L ++++S AE DG Y YQ+G+A + NTG
Sbjct: 1 MKKFVALGLLSAVLSSSLLAEGDGVYIGTNYQLGQARLNSNIYNTG 46
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 70.5 bits (171), Expect = 1e-13
Identities = 61/217 (28%), Positives = 89/217 (40%), Gaps = 42/217 (19%)
Query: 511 NGAMNGI--GVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDA 568
NG GI + +GYK F GKKR G R+ FF Y + S + YG D
Sbjct: 93 NGGSGGIFNELSLGYKYFLGKKRIIGFRHSLFFGYQLGGVGSVPGSGLIAFLPYGFNTDL 152
Query: 569 LYNFINDKNTN-----------------FLGKNN-------------KLSVGLFGGFALA 598
L N+ NDK + G+ + S GL G L
Sbjct: 153 LINWTNDKRASQEYVERRVKGLSIFYKDMTGRTLDADTLKRASRHIIRKSSGLVIGMELG 212
Query: 599 GTSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLAR---PKKKDSDHAAQHGIE 655
++W S NLT N + + + FQ G+R + + D ++ +E
Sbjct: 213 ASTWFASN--NLTPFNQVKSRTI----FQLQGKFGVRFSSDEYDIDRYGDENYLGGSSVE 266
Query: 656 LGFKIPTINTNYYS-FMGAKLEYRRMYSLFLNYVFAY 691
LG K+P NYYS G KL+Y+R+ S++LNY + +
Sbjct: 267 LGVKVPAFKVNYYSDDYGDKLDYKRVVSVYLNYTYNF 303
>ref|NP_223757.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 277
Score = 63.5 bits (153), Expect = 2e-11
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 50/210 (23%)
Query: 510 NNGAMNGIGVQVGYKQFFGKKRN---WGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGM 566
N+ NG+GVQVGYK + GK +G R+ F+D + + S S + TYG M
Sbjct: 90 NSYVSNGLGVQVGYK-WVGKHEETKWFGFRWGLFYDLSASLYGSQESQSII-ISTYGTYM 147
Query: 567 DALYNFINDKNTNFLGKNNKLSVGLFGGFALAGT-SWLNSQQVNLTMMNGIYNANVSTSN 625
D L N N +K G G A AG L+ + T++ + V+ +
Sbjct: 148 DLLLNAYN---------GDKFFAGFNLGIAFAGVYDRLSDALLYQTLLQNTFGGKVNLNG 198
Query: 626 FQFLFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTINTNYYSFMG------------- 672
FQFL DLG+R+ ++H + G KIPT N+Y M
Sbjct: 199 FQFLVDLGVRLG--------NEH---NQFGFGIKIPTYYFNHYYSMNNISNNSENVLKVL 247
Query: 673 -----------AKLEYRRMYSLFLNYVFAY 691
++++RR YS++ NY +++
Sbjct: 248 RFLEYGINSLLYQVDFRRNYSVYFNYTYSF 277
>ref|NP_223142.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 186
Score = 60.8 bits (146), Expect = 1e-10
Identities = 55/187 (29%), Positives = 88/187 (46%), Gaps = 45/187 (24%)
Query: 506 DFQNNNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVG 565
D+++ N + G+ ++G+ F K +G R YGF D+ + S ++ +++ TYG G
Sbjct: 44 DWRHGND-LYGLNFKLGFVGFANKW--FGARVYGFLDW---FNTSGTEHTKTNLLTYGGG 97
Query: 566 MDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTSN 625
D + N I +K ++GL GG LAG +W+ VN T
Sbjct: 98 GDLIVNLI---------PLDKFALGLIGGVQLAGNTWMFPYDVNQT-------------R 135
Query: 626 FQFLFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTINTNYYSFMGAK-LEYRRMYSLF 684
FQFL++LG RM + D +A E G K P +N G+K + R YS +
Sbjct: 136 FQFLWNLGGRMRV-------GDRSA---FEAGVKFPMVN------QGSKDVGLIRYYSWY 179
Query: 685 LNYVFAY 691
++YVF +
Sbjct: 180 VDYVFTF 186
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 52.8 bits (125), Expect = 3e-08
Identities = 63/229 (27%), Positives = 101/229 (43%), Gaps = 36/229 (15%)
Query: 441 DSKAINSGISNLPNAKSLQNMTHATQN-PNSPEGLLTYSLDSSKYNQLQTIAQELGKNPF 499
D A+ +NL + + N + TQ+ + ++ SL SSK + T PF
Sbjct: 522 DQNALPVDFTNLSSQTNYLNASLNTQDFATTMLSAISQSLSSSK-SSATTYRTSKTSRPF 580
Query: 500 RRFGVIDFQNNNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDV 559
+ G+ +++GY+++F GL YG YN+A + S
Sbjct: 581 -----------GAPLLGVNLKMGYQKYFNDYL--GLSSYGIIKYNYAQANNEKIQQLS-- 625
Query: 560 WTYGVGMDALYNFI----NDKN--TNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMM 613
YGVGMD L++FI N+KN +N K S+G+FGG L G L + L
Sbjct: 626 --YGVGMDVLFDFITNYTNEKNPKSNLTKKVFTSSLGVFGG--LRG---LYNSYYLLNQY 678
Query: 614 NGIYNANVSTS-NFQF---LFDLGLRMNLARPKKK--DSDHAAQHGIEL 656
G N NV+ N+++ + +G+ + L + K + SD A + I L
Sbjct: 679 KGSGNLNVTGGLNYRYKHSKYSIGISVPLVQLKSRIVSSDGAYTNSITL 727
Score = 31.2 bits (69), Expect = 0.092
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 53 NLNNLLNQYNYLNSLVNLASTPSAITGAI-DNLSSSAINLTSATT--TSPAYQAVALALN 109
+ NL +Q NYLN+ +N + + AI +LSSS + T+ T TS + A L +N
Sbjct: 529 DFTNLSSQTNYLNASLNTQDFATTMLSAISQSLSSSKSSATTYRTSKTSRPFGAPLLGVN 588
Query: 110 AAVGMWQVIALFIG 123
+G + ++G
Sbjct: 589 LKMGYQKYFNDYLG 602
Score = 24.6 bits (52), Expect = 8.6
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 4 SLLLSLSLIASLSRAEDDGFYTSVGYQIG 32
SL+ S + + + + + DGF+ G++ G
Sbjct: 12 SLISSFTAVEAFQKHQKDGFFIEAGFETG 40
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 47.8 bits (112), Expect = 9e-07
Identities = 37/116 (31%), Positives = 52/116 (43%), Gaps = 14/116 (12%)
Query: 508 QNNNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMD 567
+N + G+ V++GY+ +F GL YYG YN+A S YG GMD
Sbjct: 587 KNFRSPILGVNVKIGYQHYFNDYI--GLAYYGIIQYNYAQANDEKIQQLS----YGGGMD 640
Query: 568 ALYNFI----NDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQV----NLTMMNG 615
L++FI N K + K S G+FGG S+ QV NL ++ G
Sbjct: 641 VLFDFITTYTNKKQDHPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTG 696
Score = 25.0 bits (53), Expect = 6.6
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 36 QQVKNTGALQ----NLADRYDNLNNLLNQYNYLNSLVNLASTPSAITGAIDNLSSSAINL 91
QQ+ N AL NL + +LN LN N+ S+V SAI N S++ +
Sbjct: 531 QQLINQNALPINFANLNSQTSHLNAGLNAQNFATSMV------SAIA---QNFSTT--ST 579
Query: 92 TSATTTSPAYQAVALALNAAVGMWQVIALFIG 123
T+ ++S +++ L +N +G +IG
Sbjct: 580 TTYRSSSKNFRSPILGVNVKIGYQHYFNDYIG 611
>ref|NP_223450.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 278
Score = 45.4 bits (106), Expect = 5e-06
Identities = 46/197 (23%), Positives = 70/197 (35%), Gaps = 54/197 (27%)
Query: 522 GYKQFFGKKRNWGLRYYGFFDYNHAYI---------------------------KSNFFN 554
GYKQFF KK ++G R+Y DY + + K F N
Sbjct: 109 GYKQFFPKKEHYGFRFYVSLDYAYGFFLKNKGALGDSLRASSQIPKSYREKLQRKETFIN 168
Query: 555 SASDVWTYGVGMDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMN 614
+ YGVG D LY T LG N G +W ++
Sbjct: 169 AI----FYGVGADFLYK--RAFGTLILGVN------------FVGETWFYETKIFKQWAK 210
Query: 615 GIYNANVSTSNFQFLFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTINTNYYSFMGAK 674
N + FQ + ++G R +R K IE G +IP + +Y+
Sbjct: 211 DSLN-TYRPNMFQVMLNVGYRYRFSRYK--------NWAIEFGARIPFLINDYFKTPLYT 261
Query: 675 LEYRRMYSLFLNYVFAY 691
L ++R S++L + +
Sbjct: 262 LHFKRNISVYLTSTYDF 278
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 42.4 bits (98), Expect = 4e-05
Identities = 42/137 (30%), Positives = 65/137 (46%), Gaps = 21/137 (15%)
Query: 516 GIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFI-- 573
G+ ++GY+ +F GL YYG YN+A N +YG G+D L +FI
Sbjct: 510 GVNAKIGYQNYFNDFI--GLAYYGIIKYNYA----KAVNQKVQQLSYGGGIDLLLDFITT 563
Query: 574 -NDKN--TNFLGKNN-KLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTS-NFQF 628
++KN T K N S G+FGG NS V L + G N +V+T N+++
Sbjct: 564 YSNKNSPTGIQTKRNFSSSFGIFGGL----RGLYNSYYV-LNKVKGSGNLDVATGLNYRY 618
Query: 629 ---LFDLGLRMNLARPK 642
+ +G+ + L + K
Sbjct: 619 KHSKYSVGISIPLIQRK 635
Score = 28.1 bits (61), Expect = 0.78
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 3 KSLLLSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLNQYN 62
+ L + L L ++L E +GF+ G++ G ++ T Q R+ N YN
Sbjct: 2 RKLFIPLLLFSALEANEKNGFFIEAGFETG----LLEGT---QTQEKRHTTTKNTYATYN 54
Query: 63 YL--NSLVNLASTPSAITGAIDNLSSSAIN 90
YL ++++ A+ AI L S+++
Sbjct: 55 YLPTDTILKRAANLFTNAEAISKLKFSSLS 84
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 42.4 bits (98), Expect = 4e-05
Identities = 42/137 (30%), Positives = 65/137 (46%), Gaps = 21/137 (15%)
Query: 516 GIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFI-- 573
G+ ++GY+ +F GL YYG YN+A N +YG G+D L +FI
Sbjct: 499 GVNAKIGYQNYFNDFI--GLAYYGIIKYNYA----KAVNQKVQQLSYGGGIDLLLDFITT 552
Query: 574 -NDKN--TNFLGKNN-KLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTS-NFQF 628
++KN T K N S G+FGG NS V L + G N +V+T N+++
Sbjct: 553 YSNKNSPTGIQTKRNFSSSFGIFGGL----RGLYNSYYV-LNKVKGSGNLDVATGLNYRY 607
Query: 629 ---LFDLGLRMNLARPK 642
+ +G+ + L + K
Sbjct: 608 KHSKYSVGISIPLIQRK 624
Score = 28.1 bits (61), Expect = 0.78
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 3 KSLLLSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLNQYN 62
+ L + L L ++L E +GF+ G++ G ++ T Q R+ N YN
Sbjct: 2 RKLFIPLLLFSALEANEKNGFFIEAGFETG----LLEGT---QTQEKRHTTTKNTYATYN 54
Query: 63 YL--NSLVNLASTPSAITGAIDNLSSSAIN 90
YL ++++ A+ AI L S+++
Sbjct: 55 YLPTDTILKRAANLFTNAEAISKLKFSSLS 84
>ref|NP_223078.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 200
Score = 39.3 bits (90), Expect = 3e-04
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 509 NNNGAMNGIGVQVGYKQFFGKKRNWGL-RYYGFFDYNHAYIKSNFFNSASDVWTYGVGMD 567
N N + G + GY+ K +W RYY F DY + +N ++++TYGVG D
Sbjct: 40 NTNKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGNVLF-NNDSTLQANMFTYGVGGD 96
Query: 568 ALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMN 614
+ + KN F G LA +W+ + +V ++N
Sbjct: 97 FMVAY---------AKNPINRWAFFFGLQLAANTWILNNKVKDLVVN 134
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 32.3 bits (72), Expect = 0.041
Identities = 109/546 (19%), Positives = 188/546 (33%), Gaps = 121/546 (22%)
Query: 17 RAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNL---------LNQYNYLNSL 67
+A D+ + Y E V ++ TGA Q+ +D NN+ + + S
Sbjct: 722 KASDNITMDGLNYNNAETVTKMIQTGASQHSYTTFDATNNISVTDSDFSDMTWGKFSFSA 781
Query: 68 VNLASTPSAITGAIDNLSSSAINLTSATTTSPA-----------YQAVALALNAAVGMWQ 116
N++ + ++ +G + SS I+ ++ + S QA +L N ++
Sbjct: 782 KNISFSNASFSGFTNPGGSSTISTNASNSLSFTDSRLNGGAIYNLQANSLIFNNTQAVFN 841
Query: 117 VIALFIGCGPGPTN-NQSYQSFGNTP---------ALNGTTTTCNQAYGT---------- 156
V+ G +N N + Q GNT NG TT N A T
Sbjct: 842 VL-----YSRGTSNFNATTQLLGNTSFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAFK 896
Query: 157 -----GPNGILSIDEYQKLN----QAYQIIQTALNQNQG-----------GGMPALNDTT 196
N LS+D LN A+ Q +LN G GG +LN +
Sbjct: 897 NSLTLDNNSNLSLDNQSVLNANGTSAFN-NQASLNIYNGSQAAFSSLFFNGGTLSLNANS 955
Query: 197 KTGVVNIQQTNYRTTTQNNIIEHYYTENGKEIPVSYSGGS---------------SFSPT 241
K + +N T ++ + + + +++ G S +F
Sbjct: 956 KLNASSASFSNNTTINLDDSVLNANNTSSLNANINFQGASQADFGGNTTIDTASFNFDSA 1015
Query: 242 IQLTYH----NNAENLLQQAATIMQVLITQKPHVQTSNGGKAWGLSSTPGNVMDIFGPSF 297
L ++ N A N A ++ + L+ N G LS ++IF
Sbjct: 1016 SSLNFNNLTANGALNFNGYAPSLTKALMNVSGQFVLGNNGDI-NLSD-----INIFDNIT 1069
Query: 298 NAINEMIKNAQTALAKTQQLNANE----------NAQITQPNN------FNPYTSKDKGF 341
++ I NAQ + N E NA + NN NP S
Sbjct: 1070 KSVTYNILNAQKGITGISGANGYEKILFYGMKIQNATYSDNNNIQTWSFINPLNSSQ--I 1127
Query: 342 AQEMLNRAEAQAEILNLAKQVANNFHSIQGPIQG--DLEECKAGSAGVITNNTWGSGCAF 399
QE + + E+LN +N +I + D ++ G + ++N +G +
Sbjct: 1128 IQESIKNGDLTIEVLNNPNSASNTIFNIAPELYNYQDSKQNPTGYSYDYSDNQ--AGTYY 1185
Query: 400 VKETLNSLEQHTAYYGNQVNQDRALAQTILNFKEALNTLNKDSKAINSGISNLPNAKSLQ 459
+ + L + + +Q T F + LN+LN +K +S NL +
Sbjct: 1186 LTSNIKGL------FTPKGSQTPQTPGTYSPFNQPLNSLNIYNKGFSS--ENLKTLLGIL 1237
Query: 460 NMTHAT 465
+ AT
Sbjct: 1238 SQNSAT 1243
Score = 28.5 bits (62), Expect = 0.59
Identities = 67/308 (21%), Positives = 108/308 (34%), Gaps = 41/308 (13%)
Query: 311 LAKTQQLNANENAQITQPN--NFNPYTSKDKGFAQEMLNRAEAQAEILNLAKQVANNFHS 368
+A T ++ AN N + N N YT + A+ A+++ L + + N +
Sbjct: 2049 IANTLEVIANPNFKNDATNILQINTYTQQMSRLAKLSDTSTFARSDFLERLEALKNKRFA 2108
Query: 369 IQGPIQGDLEECKAGSAGVITNNTWGSG---CAFVKETLNSLEQHTAYYGNQVNQDRALA 425
P D+ K + NN W +G +F+ +L YG V DR +
Sbjct: 2109 DAIPNAMDVI-LKYSQRNRVKNNVWATGVGGASFISGGTGTL------YGINVGYDRFIK 2161
Query: 426 QTILNFKEALNTLNKDSKAINSGISNLP---NAKSLQNMTHATQNPNSPEG--------- 473
I+ A + SG SN+ +++ + T + N G
Sbjct: 2162 GVIVGGYAAYGYSGFHANITQSGSSNVNVGVYSRAFIKRSELTMSLNETWGYNKTFINSY 2221
Query: 474 --LLTYSLDSSKYNQLQTIAQELGKNPFR----------RFGVIDFQNNNGAMNGIGVQV 521
LL+ S +Y+ T A+ F + G+ + + GI
Sbjct: 2222 DPLLSIINQSYRYDTWTTDAKINYGYDFMFKDKSVIFKPQVGLSYYYIGLSGLRGIMDDP 2281
Query: 522 GYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYG-VGMDALYNFINDKNTNF 580
Y QF + N N A ++FN S + VG D N + DK F
Sbjct: 2282 IYNQF---RANADPNKKSVLTINFALESRHYFNKNSYYFVIADVGRDLFINSMGDKMVRF 2338
Query: 581 LGKNNKLS 588
+G NN LS
Sbjct: 2339 IG-NNTLS 2345
Score = 27.3 bits (59), Expect = 1.3
Identities = 61/275 (22%), Positives = 86/275 (31%), Gaps = 43/275 (15%)
Query: 130 NNQSYQSFGNTPALNGTTTTCNQAYGTGPNGILSIDEYQKLNQAYQIIQTALNQNQGGGM 189
NN S SF T GT N A + N + Y N A + N N G
Sbjct: 249 NNNSTISFNQTSFNQGTYNFSNSATLSFNNSNFNQGTYH-FNSAQSTFE---NSNFNQGT 304
Query: 190 PALNDTTKTGVVNIQQTNYRTTTQNNIIEHYYTENGKEIPVSYSGGSSFSP----TIQLT 245
ND T Q Y + T N S G SF+ + T
Sbjct: 305 YNFNDNTSFNNDTFNQGTYNFNSSKVSFSGANTLNSSSPFASLKGSVSFNSGAIFNLNQT 364
Query: 246 YHNNAENLLQQAATIMQVLITQK--------------PHVQTSNG---------GKAWGL 282
+NN + +Q + Q HV+ SN G+ L
Sbjct: 365 LNNNQTYDILTTNGAIQYGVYQSYLWDLINYKGDKAISHVEVSNNTYDVTFDINGQDETL 424
Query: 283 SSTPGNVM--------DIFGPSFNAINEMIKNAQTALAKTQQLNANENAQITQPNNFNPY 334
T N D+ + E + N+Q AL K N N + + NP
Sbjct: 425 QETFSNQSIITQFLGDDLQQQAQQTYQEDVANSQNALNKVASDNTIANNDTSYTQSSNPT 484
Query: 335 TSKD----KGFAQEMLNRAEAQAEILNLAKQVANN 365
KD + Q++ +A + L KQ+AN+
Sbjct: 485 ILKDAQGLENTNQQIQQDEKALEKDLAQIKQLANS 519
Score = 27.3 bits (59), Expect = 1.3
Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 7/74 (9%)
Query: 573 INDKNTNFLG---KNNKLSVGLFGGFALAGTSWLNS----QQVNLTMMNGIYNANVSTSN 625
++ N FLG N + + ++ GT LN Q NLT+ N NA+ ST+N
Sbjct: 1758 VHANNFTFLGTIISNGAIDLSQVTNNSVIGTLNLNENATLQANNLTITNAFNNASNSTAN 1817
Query: 626 FQFLFDLGLRMNLA 639
F L + L+
Sbjct: 1818 IDGNFTLNQQATLS 1831
>ref|NP_223662.1| putative [Helicobacter pylori J99]
Length = 668
Score = 31.6 bits (70), Expect = 0.070
Identities = 63/290 (21%), Positives = 106/290 (35%), Gaps = 45/290 (15%)
Query: 407 LEQHTAYYGNQVNQDRALAQTILNFKEALNTLNKDSKAINSGISNLPNAKSLQNMTHATQ 466
+E H Y+ N + T L L +K + + PNAK ++ +
Sbjct: 73 VEAHGFYFRNNATNSIDIEITSLLRDNQSFPLTSSAK---TSLKIPPNAKIKKSTILVLK 129
Query: 467 NPNSPEGLLTYSLDSSKYNQLQTIAQELGKN-------PFRRFGVIDFQNN------NGA 513
N+ E + +Y +L+ IAQ N PF F +N N A
Sbjct: 130 GENAEEVAKILGVSKEEYQKLENIAQTKAANDPMYANTPFSNGSDSSFYDNNPNSPSNNA 189
Query: 514 MNGIGVQVGYKQFFGKKRNWGLR-YYGFFDYNHAYIKSNFFNSASDVWTYGV-GMDAL-- 569
+NG G +G N G+ G N ++ +N S D T GV G+D +
Sbjct: 190 INGKDGANG-SNGYGANGNDGVNGISGSNGANGSHSNNNAIGSGID--TDGVLGVDGVNG 246
Query: 570 -------------YNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGI 616
NF N +TN NN F + +G S N + NG
Sbjct: 247 SSSSSGGSVGGYENNFTNHGSTN----NNTGGYDNFNNGSSSGGSLGNGGLFPIPFGNGD 302
Query: 617 YNANVSTSNFQFLFDLGLRMNLARPKKKDSDHAAQHGIELGFKIPTINTN 666
N + +++N + N P +++++++Q+ K+P ++ N
Sbjct: 303 TNNSNNSTNTTSPTNGSSSNNATNPSSQENNYSSQY-----CKVPELSPN 347
Score = 28.1 bits (61), Expect = 0.78
Identities = 24/83 (28%), Positives = 33/83 (38%), Gaps = 3/83 (3%)
Query: 21 DGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLNQYNYLNSLVNLASTPSAITGA 80
+G +S G +G N G+ N YDN NN + SL N P
Sbjct: 245 NGSSSSSGGSVGGYENNFTNHGSTNNNTGGYDNFNNGSSSG---GSLGNGGLFPIPFGNG 301
Query: 81 IDNLSSSAINLTSATTTSPAYQA 103
N S+++ N TS T S + A
Sbjct: 302 DTNNSNNSTNTTSPTNGSSSNNA 324
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 31.2 bits (69), Expect = 0.092
Identities = 53/226 (23%), Positives = 78/226 (34%), Gaps = 32/226 (14%)
Query: 388 ITNNTWGSGCAFVKETLNSLEQHTAYYGNQVNQDRALAQTILN---------FKEALNTL 438
+ NN W +G V N YG V DR + I+ F E + +
Sbjct: 2922 LKNNLWATGVGGVSFVENGTG---TLYGVNVGYDRFVRGVIVGGYAAYGYSGFYERITSS 2978
Query: 439 NKDSKAINSGISNLPNAKSLQNMTHATQNPN-----SPEGLLTYSLDSSKYNQLQTIAQE 493
D+ + L + T N S + LL+ S KY+ T A+
Sbjct: 2979 KSDNVDVGLYARAFIKKSELTFSVNETWGANKTQISSNDALLSMINQSYKYSTWTTNAKV 3038
Query: 494 LGKNPFR----------RFGVIDFQNNNGAMNGIGVQVGYKQFFGKKRNWGLRYYGFFDY 543
F + G+ + + G+ V Y QF K N
Sbjct: 3039 NYGYDFMFKNKSIILKPQIGLRYYYIGMSGLEGVMNNVLYNQF---KANADPSKKSVLTI 3095
Query: 544 NHAYIKSNFFNSASDVWTYG-VGMDALYNFINDKNTNFLGKNNKLS 588
+ A ++FN+ S + G VG D L N + DK F+G NN LS
Sbjct: 3096 DFALENRHYFNTNSYFYAIGGVGRDLLVNSMGDKLVRFIG-NNTLS 3140
Score = 25.0 bits (53), Expect = 6.6
Identities = 24/84 (28%), Positives = 34/84 (39%), Gaps = 10/84 (11%)
Query: 537 YYGFFDYNHAYIKSNFFNSASDVWTYGV--GMDALYNFINDKNTNFLGKNNKLSVGLFGG 594
+Y + D + + + F+S + Y G + YNF KNTNFL N K F G
Sbjct: 637 FYDWTDGGYDFTGNGVFDSVNFNKAYYKFQGAENSYNF---KNTNFLAGNFK-----FQG 688
Query: 595 FALAGTSWLNSQQVNLTMMNGIYN 618
S LN +N +N
Sbjct: 689 KTTIEKSVLNDASYAFDGVNNAFN 712
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 29.6 bits (65), Expect = 0.27
Identities = 47/194 (24%), Positives = 76/194 (38%), Gaps = 27/194 (13%)
Query: 209 RTTTQNNIIEHYYTENGKEIPV-SYSGGSSFSPTIQLTYHNNAENLLQQAATIMQVLITQ 267
R + + + E Y+ + + V S S + + + N ++L Q IM LI +
Sbjct: 303 RVSHKEGLQEIYFVASQADSAVGSMSEVEKSNHHLPTAFENAQKSLSSQLNNIMGALIEK 362
Query: 268 KPHV-QTSNGGKAWGLSSTPGNVMDIFGPSFNAINEMIKNAQTALAKTQQLNANENAQIT 326
P+ + K G+ T G + F +N +T + NA N + +
Sbjct: 363 YPNQREVFEKAKQNGVILTSGVCFSMH-KDFENQASWERNQKTE----EYHNALRNLRDS 417
Query: 327 QPNNFNPYTSKDK-----------GFAQEMLNRAEAQAE------ILNLAKQVANNFHSI 369
P+ F+ S DK G +E L +A + E + N A+ ANN HS
Sbjct: 418 YPDAFS---SDDKSKESSLFLINMGAIEERLKKAAQEKEKIMSQKLQNYAESQANNLHSF 474
Query: 370 QGPIQGDLEECKAG 383
+ DLEE K G
Sbjct: 475 ITQLLQDLEEEKRG 488
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 27.7 bits (60), Expect = 1.0
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 359 AKQVANNFHSIQGPIQGDLEECKAGSAGVITNNTWGSGCAFVKETLNSLEQHTAYYGNQV 418
A + +H GP + G G++ NN G C + + +L+ +
Sbjct: 116 ANDLLKPYHKKIGPDPATINTAMIG--GIVANNASGMCCGVEQNSYKTLKSLRVILADGT 173
Query: 419 NQDRALAQTILNFKEALNTL 438
D A +++ NFK A L
Sbjct: 174 LLDTADQESVENFKNARKDL 193
>ref|NP_222814.1| putative [Helicobacter pylori J99]
Length = 253
Score = 27.7 bits (60), Expect = 1.0
Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 23/176 (13%)
Query: 516 GIGVQVGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFIND 575
G G + F G R + ++Y H+ S V YG +D + F++
Sbjct: 101 GFNTATGLEHFLRNHPKVGFRIFSVYNYFHSVSLSQ--PQILMVQNYGGALDFSWIFVDK 158
Query: 576 KNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLR 635
K F + L + L G L T + G + + + F F LR
Sbjct: 159 KTYRF---RSYLGIALEQGVLLVDT-----------IKTGSFTTIIPRTKKTF-FQAPLR 203
Query: 636 MNLARPKKKDSDHAAQHGIELGFKIPTINTNYYSFMGAKLEYRRMYSLFLNYVFAY 691
D ++LG ++P + +Y++ + ++ ++ L+ + ++
Sbjct: 204 FGFI------VDFIGYLSLQLGIEMPLVRNVFYTYNNHQERFKPRFNANLSLIVSF 253
>ref|NP_223381.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 305
Score = 26.9 bits (58), Expect = 1.7
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 572 FINDKNTNFLGKNNKLSVGL-FGGFALAGTSWLNSQQVNL 610
F+N + ++GK N+ +VGL ++L+ SW N N+
Sbjct: 240 FVNFGGSLYIGKRNRFNVGLKIPYYSLSAQSWKNFGSSNV 279
>ref|NP_222972.1| DIHYDROOROTASE [Helicobacter pylori J99]
Length = 378
Score = 26.9 bits (58), Expect = 1.7
Identities = 12/41 (29%), Positives = 23/41 (55%)
Query: 298 NAINEMIKNAQTALAKTQQLNANENAQITQPNNFNPYTSKD 338
NA+ E +KN + A+ + + N NAQ+ + + F + +D
Sbjct: 244 NALKEALKNNEIAMLTSLHASKNSNAQLFEESAFGCESIED 284
>ref|NP_223273.1| putative [Helicobacter pylori J99]
Length = 189
Score = 26.2 bits (56), Expect = 2.9
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 11/46 (23%)
Query: 557 SDVWTY---------GVGMDALY--NFINDKNTNFLGKNNKLSVGL 591
SD +TY G+G+ Y N + KN++F+G N +VGL
Sbjct: 100 SDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGL 145
>ref|NP_224046.1| putative PROTEASE IV [Helicobacter pylori J99]
Length = 292
Score = 25.8 bits (55), Expect = 3.8
Identities = 18/92 (19%), Positives = 40/92 (42%), Gaps = 1/92 (1%)
Query: 298 NAINEMIKNAQTALAKTQQLNANENAQITQPNNFNPYTSKDKGFAQEMLNRAEAQAEILN 357
N +NE + +AK ++LNA + + F+ + ++ +AQ ++
Sbjct: 192 NLVNEQYQMFVDDVAKARKLNAKDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQDRLME 251
Query: 358 LAKQVANNFHSIQGPIQGDLEECKAGSAGVIT 389
L+K V + + P++ +E+ +IT
Sbjct: 252 LSK-VKKAYWLEKSPMERFIEKATQSVTSIIT 282
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 25.4 bits (54), Expect = 5.0
Identities = 22/101 (21%), Positives = 47/101 (45%), Gaps = 17/101 (16%)
Query: 551 NFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKLSVGLFGG----FALAGTSWLNSQ 606
+F+NS +D++TY + ++ + +K + +NK + +G + L T+ ++
Sbjct: 843 DFYNSTADIYTYFFALS--FHLLREKGFSAFITSNKYARAKYGAKLREWLLKKTTLVSYM 900
Query: 607 QVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKKDSD 647
++N + +A V TS F + +P K+SD
Sbjct: 901 ELN--ALKVFESAAVDTSIIHF---------IKQPPLKESD 930
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 25.4 bits (54), Expect = 5.0
Identities = 26/101 (25%), Positives = 43/101 (41%), Gaps = 22/101 (21%)
Query: 170 LNQAYQIIQTALNQNQGGGMPALNDTTKTGVVNIQQTNYRTTTQNNIIEHYYTENGKEIP 229
LNQA + + N + L D+TK VVN+ Y E+ K++P
Sbjct: 992 LNQAVSEAKASHFDNLDQMIDKLKDSTKKNVVNL-----------------YVESAKKVP 1034
Query: 230 VSYSGG-SSFSPTIQLTYHNNAEN-LLQQAATIMQVLITQK 268
S S +++ ++N +N + + AT M +TQK
Sbjct: 1035 TSLSAKLDNYATNSHTRINSNVKNGTINEKATGM---LTQK 1072
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 25.4 bits (54), Expect = 5.0
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 35 VQQVKNTGALQNLADRYDNLNNLLNQYNYL----NSLVNLAST 73
VQ ++ ++A+ Y+ +NL N YN + N + NL+ T
Sbjct: 783 VQSIRGETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLT 825
>ref|NP_222886.1| putative [Helicobacter pylori J99]
Length = 406
Score = 25.4 bits (54), Expect = 5.0
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 5/46 (10%)
Query: 203 IQQTNYRTTTQNNIIEH-----YYTENGKEIPVSYSGGSSFSPTIQ 243
I +N+ T N+IE+ YY+EN + G +FS TI+
Sbjct: 74 IINSNFPLTAYKNVIEYFLSHGYYSENKSYYENNAKGRINFSKTIK 119
>ref|NP_224202.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 327
Score = 24.6 bits (52), Expect = 8.6
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 354 EILNLAKQVANNFHSIQGPIQGDLEECKAGSAGVITNNTWGSGCAFVKETLNSLEQ 409
E+ N+ K N FH+++G +LE K GVI + G+G + + +N LE+
Sbjct: 4 ELKNIEKIYENGFHALKGV---NLELKKGDILGVIGYS--GAGKSTLIRLINCLER 54
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 24.6 bits (52), Expect = 8.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 304 IKNAQTALAKTQQLNANENAQITQPNNFNPYTSKD 338
+K+ QT L++ LNA+ T P N NP + D
Sbjct: 184 LKDIQT-LSQKHDLNASNIQAATTPENKNPLNASD 217
>ref|NP_223289.1| putative [Helicobacter pylori J99]
Length = 352
Score = 24.6 bits (52), Expect = 8.6
Identities = 51/201 (25%), Positives = 76/201 (37%), Gaps = 32/201 (15%)
Query: 1 MKKSLLLSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADR--YDNLNNLL 58
+KKSLLL + LI LS AE++ Q KNT N A+ N N +
Sbjct: 2 LKKSLLLLVFLILQLSGAEENN-------------QAPKNTPPELNPANTKGAPNPNTQI 48
Query: 59 NQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALN--AAVGMWQ 116
N ++L++ +P + S+ I+L A++ + + + A G +
Sbjct: 49 TPKNDNSNLLDKLGSPENAQTEL----SAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFA 104
Query: 117 VIALFIGCGPGPTNNQSYQSFGNTPALNGTTTTC---NQAYGTGPNGILSIDEYQKLNQA 173
V A++ TN + G T C Q Y N D K N A
Sbjct: 105 VGAMYANGVGIQTNRLKAARYYEMGCSGGDATACANLAQMYENKKNA----DSNDKEN-A 159
Query: 174 YQIIQTALNQNQGGGMPALND 194
Q+ A QGG M A N+
Sbjct: 160 LQLYAVAC---QGGDMLACNN 177
>ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE [Helicobacter
pylori J99]
Length = 422
Score = 24.6 bits (52), Expect = 8.6
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 56 NLLNQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVA 105
+L+++Y+Y++SL + + TP+ I +I + TT ++AV+
Sbjct: 77 HLMSEYDYIDSLFDHSFTPTMI--SISGTNGKTTTTEMLTTLLEDFKAVS 124
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 747,542
Number of Sequences: 1491
Number of extensions: 37008
Number of successful extensions: 298
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 99
length of query: 691
length of database: 494,079
effective HSP length: 84
effective length of query: 607
effective length of database: 368,835
effective search space: 223882845
effective search space used: 223882845
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)